BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0091.p (404 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A3ZY94.1 A3ZY94_9PLAN Putative pyridine nucleotide-disulphide ox... 363 1e-98 A6C5T3.1 A6C5T3_9PLAN Fumarate reductase/succinate dehydrogenase... 343 1e-92 Q01ZE3.1 Q01ZE3_SOLUE Putative uncharacterized protein 309 3e-82 C0A839.1 C0A839_9BACT Putative uncharacterized protein 265 6e-69 Q15XH0.1 Q15XH0_PSEA6 Fumarate reductase/succinate dehydrogenase... 242 5e-62 >A3ZY94.1 A3ZY94_9PLAN Putative pyridine nucleotide-disulphide oxidoreductase Length = 623 Score = 363 bits (933), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 191/414 (46%), Positives = 251/414 (60%), Gaps = 21/414 (5%) Query: 1 MTFTPPSWTRKFSEEDLKFRNHST------WEYGYWWVEFGGMMDTIADNEAIRDELLAI 54 M FTPP+ R+FSE+DL+ R H+ EYGYWWVE+GG +DTI DNE IRDELL+I Sbjct: 214 MPFTPPASARRFSEQDLRLRPHAESELDRGLEYGYWWVEWGGCLDTIRDNEQIRDELLSI 273 Query: 55 MLGVWDHIKNSGNHPESENWALDWFGFVPGKRESRRFIGKYLLTQTDIEQATHFDDVIAY 114 ++GVWDH+KN G+H +ENWAL+WFGFVPGKRESRRF G+ L++TD+ ++ D IA+ Sbjct: 274 VMGVWDHVKNGGDHG-AENWALEWFGFVPGKRESRRFTGRTTLSETDVMRSRRMPDAIAF 332 Query: 115 GGWPMDTHPPQGIDATELNPAHQPFSRYVYGIPLKALISANVENLMFAGRNISATHIAFS 174 GGWP+D HPP+G+DA + P Q +Y IPL+ +S N+ NLMFAGRNISATHIAF+ Sbjct: 333 GGWPIDVHPPEGVDAPDEPPCTQHDVPALYDIPLRCCVSGNLRNLMFAGRNISATHIAFA 392 Query: 175 STRVXXXXXXXXXXXXXXXXXXVQSGLTLDDALHDIEFIQQVQHKLLKQDAYLPGITPAR 234 STRV D IQQ+Q +LL+ DAYL G+ Sbjct: 393 STRVMATCAAMGQGVGTAAAIACDRRQDPADLFDSPTSIQQIQQRLLRDDAYLIGVKNED 452 Query: 235 D-NLASSAIVRASSEQQEGKAAYITDGYTRAMHGVGGARPELAVPGTHRWMSQTGDPAP- 292 D +LA A ASSE +IT G TR++HG GA + A PG HRW S D P Sbjct: 453 DHDLARLATFTASSEISPNSVRWITSGQTRSVHGDDGAPADRANPGVHRWRSNPLDSFPV 512 Query: 293 WIELEWITPVSIGKIEIVFDTGMHRRLTLTHSDEVLKMMEWG-PQPETVKDFRVTAFFAN 351 +E+ W P+ + I+FD+G+HR LT + +D + M+WG PQPE V+D+R+ Sbjct: 513 SLEMSWPQPIRAANVRIIFDSGLHRVLTFSLADAYTEKMKWGVPQPELVRDYRI------ 566 Query: 352 PEIPAHQ----VVSIQDNYQRQIACQVNLEHIVKLRVDIANTNGLDHARIFEIR 401 E+ V I+DNYQR ++ LR+ I TNG+DHAR+ EIR Sbjct: 567 -EVRRDHVWSVVAEIRDNYQRLRDHSLDQAAFDALRLTIDKTNGIDHARVCEIR 619 >A6C5T3.1 A6C5T3_9PLAN Fumarate reductase/succinate dehydrogenase flavoprotein-like protein Length = 627 Score = 343 bits (881), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 195/421 (46%), Positives = 260/421 (61%), Gaps = 21/421 (4%) Query: 1 MTFTPPSWTRKFSEEDLKFRNHST-------WEYGYWWVEFGGMMDTIADNEAIRDELLA 53 M F P+W RKF +LK R ++T EYGYWW E+GGM+DTI +NE IRDELLA Sbjct: 210 MPFVAPAWARKFDPAELKLRLYATPGEEEPTHEYGYWWAEWGGMLDTIKENEQIRDELLA 269 Query: 54 IMLGVWDHIKN------SGNHP-ESENWALDWFGFVPGKRESRRFIGKYLLTQTDIEQAT 106 I+LG+WDH+KN +G P ++ +WALDWFGFVPGKRESRRFIG+++LT+ D+ + Sbjct: 270 IVLGIWDHVKNGPEGTPAGEDPFQAAHWALDWFGFVPGKRESRRFIGQHILTEHDLLSSR 329 Query: 107 HFDDVIAYGGWPMDTHPPQGIDATELNPAHQPFSRYVYGIPLKALISANVENLMFAGRNI 166 F D IAYGGW +D HPP+GIDA L P Q ++Y IPL A IS N +NLMFAGRNI Sbjct: 330 AFPDAIAYGGWSLDLHPPEGIDAPGLEPCIQHPVPHLYDIPLAACISVNRQNLMFAGRNI 389 Query: 167 SATHIAFSSTRVXXXXXXXXXXXXXXXXXXVQSGLTLDDALHDIEFIQQVQHKLLKQDAY 226 SATH+AFSSTRV +Q + + E + Q+Q +LL+ DAY Sbjct: 390 SATHVAFSSTRVMATCATIGQGVGTAAALAIQQQQEPAELSTNSEIMAQIQQQLLRDDAY 449 Query: 227 LPGITPARD-NLASSAIVRASSEQQEGKAAYITDGYTRAMHGVGGARPELAVPGTHRWMS 285 L GI +LA SA V ASSEQ +A ++ G TR++HG GA A PG HRW+S Sbjct: 450 LVGIRNEDVYDLARSASVSASSEQAGYEACHVISGQTRSVHGSAGAPEGRAFPGGHRWLS 509 Query: 286 QTGDPAPW-IELEWITPVSIGKIEIVFDTGMHRRLTLTHSDEVLKMMEWG-PQPETVKDF 343 + P + LEW + + ++++FDTG+HR LTL+H D M+WG PQPETV+D+ Sbjct: 510 DPAEDLPATLLLEWEKSIKVNVVQLIFDTGLHRHLTLSHHDGYTAKMQWGTPQPETVRDY 569 Query: 344 RVTAFFANPEIPAHQVVSIQDNYQRQIACQVNLEHIVK-LRVDIANTNGLDHARIFEIRC 402 ++ + Q+V++ N QR+ Q+ E VK LR+ + TNG+ AR+ EIR Sbjct: 570 QIEVHDGS---DWQQIVNVTGNVQRRRVHQLESEITVKQLRIVVTATNGVVQARVCEIRV 626 Query: 403 Y 403 Y Sbjct: 627 Y 627 >Q01ZE3.1 Q01ZE3_SOLUE Putative uncharacterized protein Length = 636 Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 168/405 (41%), Positives = 241/405 (59%), Gaps = 18/405 (4%) Query: 1 MTFTPPSWTRKFSEEDLKFRNHSTWEYGYWWVEFGGMMDTIADNEAIRDELLAIMLGVWD 60 M FTPP+W RK ++E L+ R ++WEYGYWW+E+GG + IADNE IR ELL+I++GVWD Sbjct: 247 MPFTPPAWARKITKEQLRHRPITSWEYGYWWIEWGGDHEVIADNERIRFELLSIVMGVWD 306 Query: 61 HIKNSGNHPESENWALDWFGFVPGKRESRRFIGKYLLTQTDIEQATHFDDVIAYGGWPMD 120 +IKNSG P+S +WA+DW G +PGKR SRR +G YLL Q D+ ++ F D +A GGW MD Sbjct: 307 YIKNSGEFPDSRHWAMDWVGMMPGKRGSRRLLGDYLLKQQDL-MSSSFPDAVAIGGWAMD 365 Query: 121 THPPQGIDATELNPAHQPFSRYVYGIPLKALISANVENLMFAGRNISATHIAFSSTRVXX 180 HPP+G D +L P VY IPL++L S N+ NL+ AGRNISA+++AF+S RV Sbjct: 366 GHPPEGFDRPDLPPNTVLHPPEVYDIPLRSLYSRNISNLLMAGRNISASYVAFTSARVMA 425 Query: 181 XXXXXXXXXXXXXXXXVQSGLTLDDALHDIEFIQQVQHKLLKQDAYLPGITPARD-NLAS 239 V++ +T D I +++ LL+ D + G+T +LA Sbjct: 426 TCAVEGQAIGTAAAQCVETRVTPRQLAADATQIARLRQTLLRDDQTVKGLTNQDALDLAR 485 Query: 240 SAIVRASSEQQEGKAAYITDGYTRAMHGVGGARPELAVPGTHRWMSQTGDPAP-WIELEW 298 SA V AS+ G+ A + DG+ R + G E+ H+W + P+P W+EL W Sbjct: 486 SAGVSASA----GRPALLLDGHVRDVPDKKGDPAEV-----HQWSA----PSPAWVELHW 532 Query: 299 ITPVSIGKIEIVFDTGMHRRLTLTHSDEVLKMMEWGPQPETVKDFRVTAFFANPEIPAHQ 358 P + +++I FD+G R+LTLT + + PQPETV+D+ V A A+ H Sbjct: 533 DRPRRLRELQITFDSGFKRQLTLTAQESQNVNLLRAPQPETVRDYTVIARDADGR--EHT 590 Query: 359 VVSIQDNYQRQIACQVNLEHIVKLRVDIANTNGLDHARIFEIRCY 403 + +++DN+QR + + + LR+ I TNG ARIFE+RCY Sbjct: 591 LATVKDNFQRLRRHRFDAAEVQSLRIVIQATNGDPLARIFEVRCY 635 >C0A839.1 C0A839_9BACT Putative uncharacterized protein Length = 612 Score = 265 bits (677), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 159/427 (37%), Positives = 224/427 (52%), Gaps = 43/427 (10%) Query: 3 FTPPSWTRKFSEEDLKFRNHSTWEYGYWWVEFGGMMDTIADNEAIRDELLAIMLGVWDHI 62 F PSW RKF + D K+R +++EYGYWW E+GG DTI DNE IR ELL I LGVWD+I Sbjct: 202 FIAPSWVRKFQKSDFKYRPINSYEYGYWWFEWGGQFDTIKDNEKIRHELLRITLGVWDYI 261 Query: 63 KNSGNHPESENWALDWFGFVPGKRESRRFIGKYLLTQTDIEQATHFDDVIAYGGWPMDTH 122 KNSG+HP S NWALDW +PGKRESRRF+G ++L + D+ FDD +AYGGW +D H Sbjct: 262 KNSGDHPNSANWALDWVAPIPGKRESRRFLGAHVLKEQDVLGGRIFDDQVAYGGWAIDLH 321 Query: 123 PPQGIDATELNPAHQPFS----RYVYGIPLKALISANVENLMFAGRNISATHIAFSSTRV 178 PP G+D P +PF+ +++Y IP S N+ NL+FAGRNISATH+AF+STRV Sbjct: 322 PPSGVDV----PDERPFTPTQFKHIYTIPFGCYHSRNIGNLLFAGRNISATHVAFASTRV 377 Query: 179 XXXXXXXXXXXXXXXXXXVQSGLTLDDALHDIEF-------IQQVQHKLLKQDAYLPGIT 231 ++S DD +D+ I +Q +L + DA+LP + Sbjct: 378 MATCAIGGQAIGTAAALWMKS----DDKTNDLRVLAANKANIIALQRRLQRDDAWLPSLP 433 Query: 232 PARD--NLASSAIVRASSEQQ----EGKAAYITDGYTRAMHGV--------GGARPELAV 277 D N+ + V+AS+ + A + DG R + AR Sbjct: 434 TNADPANMLRAGNVKASATSEVTGIGAAATNVLDGTPRDLKASFALDASQGASARWTGDT 493 Query: 278 PGTHRWMSQTGDPAPWIELEWITPVSIGKIEIVFDTGMHRRLTLTHSDEVLKMMEWGPQP 337 HRW S + L P +I ++ + FD+G R L L+ SD QP Sbjct: 494 DSIHRWESAALPAT--LTLALAAPAAIREVHVTFDSGFERELILSMSDSHTSRSVRAAQP 551 Query: 338 ETVKDFRVTAFFANPEIPAHQVVSIQDNYQRQ-IACQVNLEHIVKLRVDIANTNGLDHAR 396 ETVKD+R+ ++ + + N+QR+ I KL +++ TNG AR Sbjct: 552 ETVKDYRL-------KLDGKVIAEVTGNWQRKRIHTLATPMTGSKLEIEVLATNGAAGAR 604 Query: 397 IFEIRCY 403 ++E++ + Sbjct: 605 VYEVQAF 611 >Q15XH0.1 Q15XH0_PSEA6 Fumarate reductase/succinate dehydrogenase flavoprotein-like Length = 641 Score = 242 bits (617), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 144/408 (35%), Positives = 210/408 (51%), Gaps = 25/408 (6%) Query: 1 MTFTPPSWTRKFSEEDL-KFRNHSTWEYGYWWVEFGGMMDTIADNEAIRDELLAIMLGVW 59 M + PPS+ K+ E+ + R + + G WWVE G D I D E R +L+ + GVW Sbjct: 253 MPYKPPSYALKYDAENAHERRKFNAYHEGIWWVEVGSDEDIIGDQEINRHKLMGYLHGVW 312 Query: 60 DHIKNSGNHPESENWALDWFGFVPGKRESRRFIGKYLLTQTDIEQATHFDDVIAYGGWPM 119 D+IKNSG PESEN ALDW G +P +RESRRFIG Y+ ++ D+ HF D +A+GGW + Sbjct: 313 DYIKNSGKFPESENLALDWVGSLPSRRESRRFIGDYIHSERDLTGYKHFADAVAFGGWGI 372 Query: 120 DTHPPQGIDATELNPA--HQPFSRYVYGIPLKALISANVENLMFAGRNISATHIAFSSTR 177 D H P GI+ T L P H F VY IP ++L S N+ NL+FAGRN+S THIA +S+R Sbjct: 373 DEHNPGGIENTALAPTTFHAHFDE-VYQIPFRSLYSKNIPNLLFAGRNVSQTHIALASSR 431 Query: 178 VXXXXXXXXXXXXXXXXXXVQSGLTLDDALHDIEFIQQVQHKLLKQDAYLPGITPARD-- 235 + +Q G+T + I +Q LL+ D ++P PA D Sbjct: 432 IMATCALMGQAVGTAAYLCLQKGITPRQLAQ--QHINTLQEALLRDDMFIPK-RPASDPL 488 Query: 236 NLASSAIVRASSEQQEGKAAYITDGYTRAMHGVGGARPELAVPGTHRWMSQTGDPAPWIE 295 +LA A +S + G A + DG +R + H W S++ PA +++ Sbjct: 489 DLARRANAIFASSTRTGDAKLLVDGMSRDIDST-----------VHHWQSESL-PA-FVQ 535 Query: 296 LEWITPVSIGKIEIVFDTGMHRRLTLTHSDEVLKMMEWGPQPETVKDFRVTAFFANPEIP 355 EW PVSI +EI DT + R + + + ++ G PE +K + A Sbjct: 536 FEWEEPVSISSVEIKCDTNVKRNIMMRKDSKNDELFFNGVPPEMMKSLAIEARIKG---Q 592 Query: 356 AHQVVSIQDNYQRQIACQVNLEHIVKLRVDIANTNGLDHARIFEIRCY 403 + S+ DN R I Q + + LR+ ++ T G A++FE+R Y Sbjct: 593 WQTLSSVNDNRSRLIRSQFSQRDVTALRISLSETYGKSTAKLFEVRAY 640 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,494,010,322 Number of extensions: 103401241 Number of successful extensions: 205692 Number of sequences better than 1.0e-05: 126 Number of HSP's gapped: 205662 Number of HSP's successfully gapped: 127 Length of query: 404 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 266 Effective length of database: 1,760,596,133 Effective search space: 468318571378 Effective search space used: 468318571378 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)