BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0307.0090.p
         (49 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C1ZFE3.1 C1ZFE3_PLALI Putative uncharacterized protein                 59   1e-07
A3I195.1 A3I195_9SPHI Probable secreted protein-putative xanthan...    57   6e-07
Q7UYW5.1 Q7UYW5_RHOBA Probable xanthan lyase                           57   6e-07

>C1ZFE3.1 C1ZFE3_PLALI Putative uncharacterized protein
          Length = 706

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 1   MESVFMVLGQSAAVAASISMSDQVTVQEVEYKKLKERLLQVNQIL 45
           ME VFMVLGQSAA AAS ++  + TVQ+V+Y KL+E+LL+  Q+L
Sbjct: 509 MEPVFMVLGQSAATAASFAIDGKTTVQDVDYAKLREKLLEDKQVL 553


>A3I195.1 A3I195_9SPHI Probable secreted protein-putative xanthan lyase
           related
          Length = 553

 Score = 57.0 bits (136), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 38/45 (84%)

Query: 1   MESVFMVLGQSAAVAASISMSDQVTVQEVEYKKLKERLLQVNQIL 45
           ME VFM+LGQSAAVAAS+++ +Q  VQ+V++++LK+ L Q NQ+L
Sbjct: 503 MEPVFMILGQSAAVAASLAIDNQQAVQDVDFQELKKMLHQENQVL 547


>Q7UYW5.1 Q7UYW5_RHOBA Probable xanthan lyase
          Length = 700

 Score = 56.6 bits (135), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 34/45 (75%)

Query: 1   MESVFMVLGQSAAVAASISMSDQVTVQEVEYKKLKERLLQVNQIL 45
           ME VFMVLGQ+ A AA I++ DQV VQ V+Y++L  RLL+  Q+L
Sbjct: 503 MEPVFMVLGQTTATAAVIAIDDQVAVQNVDYERLASRLLEDKQVL 547


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.127    0.319 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 198,848,951
Number of extensions: 3899785
Number of successful extensions: 14239
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 14239
Number of HSP's successfully gapped: 3
Length of query: 49
Length of database: 3,060,696,203
Length adjustment: 22
Effective length of query: 27
Effective length of database: 2,853,433,873
Effective search space: 77042714571
Effective search space used: 77042714571
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)