BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0088.p (453 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3QRN7.1 C3QRN7_9BACE FAD dependent oxidoreductase 401 e-110 A7LWF2.1 A7LWF2_BACOV Putative uncharacterized protein 400 e-109 A7ABE4.1 A7ABE4_9PORP Putative uncharacterized protein 397 e-108 A6PNA6.1 A6PNA6_9BACT FAD dependent oxidoreductase 370 e-100 B7B5G2.1 B7B5G2_9PORP Putative uncharacterized protein 364 1e-98 >C3QRN7.1 C3QRN7_9BACE FAD dependent oxidoreductase Length = 463 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 208/441 (47%), Positives = 269/441 (60%), Gaps = 17/441 (3%) Query: 1 LKSKEIPLNSSFDVIVVXXXXXXXXXXXXXXXXXXSTLLIEAXXXXXXXXXXXXVPAWCP 60 LK+ +I ++ +DVIV+ TLLIEA VPAWCP Sbjct: 36 LKNTKIAVDDRWDVIVIGGGPGGCTAAISAAREGAKTLLIEAMGQLGGMGTAGMVPAWCP 95 Query: 61 FSDKQKMIYRGLAAKVFDTLKGQMPHVHADALDWVPIEPEKLKRVYDDLVTEAGASVLFL 120 FSD +K+IYRGLA K+F+ K +PH L+WV I PE L +VYD +V ++GA VLF Sbjct: 96 FSDGEKIIYRGLAEKIFEASKKGVPHERKQKLNWVNINPEYLMQVYDQMVADSGAQVLFF 155 Query: 121 TTLADVERDEDGNVTAIVVLNKGGLQAFRAKVYVDCTGDGDVAAWAGAEYQKGDAVTGEL 180 + +A VE + + AI+V NK GL AF+AKV++D TGDGDVAAWAGA ++KG G + Sbjct: 156 SRVAAVEMSANDTIDAIIVANKSGLVAFKAKVFIDATGDGDVAAWAGASFKKG-GEDGVV 214 Query: 181 QPATHCFILGNVDDYAY-LNGQNLHAENPLSPIHEAYQSGAYPGIPDTHLCNNLVAPRSV 239 Q +T CF NVD Y Y L G +LH N SPI++ +SG YP I H +NL+ P V Sbjct: 215 QSSTLCFSFANVDSYHYNLIGPSLHTSNKNSPIYDVIKSGKYPLI-GKHFNSNLIGPDVV 273 Query: 240 GFNAGHLWGVDNTDTFTVSNAMIEGRRMAAAYRDMLAAVQPSAFGNAFVMSTGTLIGTRE 299 FNAGH+ VD+TD + + AM GR++A Y + L V+P AFG+AFV+ T +L+G R+ Sbjct: 274 QFNAGHIDNVDSTDPWDTTRAMATGRQIAEQYLEALKEVRPKAFGSAFVVKTASLLGVRD 333 Query: 300 SRRIIGDYILTAEDYIGRKSFEDEICRNSYFLDIH--GNQEEQQNGTGSSLSITLYGPGE 357 SRRI GDY T +D++ RK+FEDEI RN Y++D+H G++E T Y GE Sbjct: 334 SRRIEGDYTFTFQDWLERKTFEDEIGRNCYYIDVHKPGHKE------------TRYKKGE 381 Query: 358 SHGIPYRCLTPRGLRNVLVAGRSISCDRRVLGSVRVMPVCXXXXXXXXXXXXXXXXXXEN 417 SHGIPYRCLTP+GL+N+LVAGR IS D GS+RVMP C N Sbjct: 382 SHGIPYRCLTPKGLKNLLVAGRCISTDEEAFGSLRVMPPCLVTGEAAGMAAVHAIKQARN 441 Query: 418 DVHAVDVALLRKRLKEEGAYL 438 DVH +D LLRKRLKEEG Y Sbjct: 442 DVHKIDTVLLRKRLKEEGQYF 462 >A7LWF2.1 A7LWF2_BACOV Putative uncharacterized protein Length = 463 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 208/441 (47%), Positives = 267/441 (60%), Gaps = 17/441 (3%) Query: 1 LKSKEIPLNSSFDVIVVXXXXXXXXXXXXXXXXXXSTLLIEAXXXXXXXXXXXXVPAWCP 60 LK+ +I ++ +DVIV+ TLLIEA VPAWCP Sbjct: 36 LKNTKIAVDDRWDVIVIGGGPAGCTAAISAAREGAKTLLIEAMGQLGGMGTAGMVPAWCP 95 Query: 61 FSDKQKMIYRGLAAKVFDTLKGQMPHVHADALDWVPIEPEKLKRVYDDLVTEAGASVLFL 120 FSD +K+IYRGLA K+F+ + +PH L+WV I PE L +VYD +V E+GA VLF Sbjct: 96 FSDGEKIIYRGLAEKIFEASRKGVPHERKQKLNWVNINPEYLMQVYDRMVAESGAKVLFF 155 Query: 121 TTLADVERDEDGNVTAIVVLNKGGLQAFRAKVYVDCTGDGDVAAWAGAEYQKGDAVTGEL 180 + +A VE D V AI+V NK GL AF+AKV++D TGDGDVA WAGA ++KG G L Sbjct: 156 SRVAAVEMSADDTVDAIIVANKSGLVAFKAKVFIDATGDGDVATWAGASFKKG-GEDGIL 214 Query: 181 QPATHCFILGNVDDYAY-LNGQNLHAENPLSPIHEAYQSGAYPGIPDTHLCNNLVAPRSV 239 Q +T CF NVD Y Y L G +LH N SPI +A +SG YP I H +NL+ P V Sbjct: 215 QSSTLCFSFANVDSYNYNLIGPSLHTSNKNSPIFDAIKSGKYPLI-GRHFNSNLIGPDVV 273 Query: 240 GFNAGHLWGVDNTDTFTVSNAMIEGRRMAAAYRDMLAAVQPSAFGNAFVMSTGTLIGTRE 299 FNAGH+ VD+TD + + AM GR++A Y + L +QP FG+AFV+ T +L+G R+ Sbjct: 274 QFNAGHIDNVDSTDPWATTRAMATGRQIAEQYLEALKELQPKTFGSAFVVKTASLLGVRD 333 Query: 300 SRRIIGDYILTAEDYIGRKSFEDEICRNSYFLDIH--GNQEEQQNGTGSSLSITLYGPGE 357 SRRI GDY T +D++ RK+FEDEI RN Y++D+H G++E T Y GE Sbjct: 334 SRRIEGDYTFTFQDWLERKTFEDEIGRNCYYIDVHKPGHKE------------TRYKKGE 381 Query: 358 SHGIPYRCLTPRGLRNVLVAGRSISCDRRVLGSVRVMPVCXXXXXXXXXXXXXXXXXXEN 417 SHGIPYRCLTP+G++N+L AGR IS D GS+RVMP C +N Sbjct: 382 SHGIPYRCLTPKGMKNLLTAGRCISTDEEAFGSLRVMPPCLVTGEAAGMAAVHAIKQTKN 441 Query: 418 DVHAVDVALLRKRLKEEGAYL 438 DVH +DV LRKRLKEEG Y Sbjct: 442 DVHKIDVGFLRKRLKEEGQYF 462 >A7ABE4.1 A7ABE4_9PORP Putative uncharacterized protein Length = 464 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 202/440 (45%), Positives = 271/440 (61%), Gaps = 15/440 (3%) Query: 1 LKSKEIPLNSSFDVIVVXXXXXXXXXXXXXXXXXXSTLLIEAXXXXXXXXXXXXVPAWCP 60 LK +I ++ +DVI+V TLLIEA VPAWCP Sbjct: 37 LKRSQIKVDDQWDVIIVGGGPAGCTAAIAAAREGAKTLLIEAMGQLGGMGTAGMVPAWCP 96 Query: 61 FSDKQKMIYRGLAAKVF-DTLKGQMPHVHADALDWVPIEPEKLKRVYDDLVTEAGASVLF 119 FSD +K+IY+GLA K+F +++KG + H + LDWV I PE L +YD +VTE+GA VLF Sbjct: 97 FSDGEKIIYKGLAEKIFRESMKG-VSHEPENKLDWVSINPEYLMSIYDRMVTESGAKVLF 155 Query: 120 LTTLADVERDEDGNVTAIVVLNKGGLQAFRAKVYVDCTGDGDVAAWAGAEYQKGDAVTGE 179 + LA VE D + AI+V NK GL AF+ KVY+D TGDGD+AAW+GA +++G G Sbjct: 156 FSRLAAVEMSSDDTIDAIIVSNKAGLVAFKGKVYIDATGDGDLAAWSGASFKRGYDEEGS 215 Query: 180 LQPATHCFILGNVDDYAYLNGQNLHA-ENPLSPIHEAYQSGAYPGIPDTHLCNNLVAPRS 238 +Q ++ CF N+D Y Y+NG L+ ++ +P+++A +SG YP + DTH CNNLV P Sbjct: 216 VQMSSLCFSFANIDSYDYINGPTLYVWKDESTPLYKAVRSGKYP-LVDTHFCNNLVGPDV 274 Query: 239 VGFNAGHLWGVDNTDTFTVSNAMIEGRRMAAAYRDMLAAVQPSAFGNAFVMSTGTLIGTR 298 + NAGH+ VD TD + +S AMI GR+ A Y + + V+PS F NAFV+ T +L+G R Sbjct: 275 IQCNAGHM-TVDTTDPWAISEAMILGRQKAVQYLEAMKDVRPSTFSNAFVVKTASLLGVR 333 Query: 299 ESRRIIGDYILTAEDYIGRKSFEDEICRNSYFLDIHGNQEEQQNGTGSSLSITLYGPGES 358 +SRRI GDYI T ED+ RKSFEDEI RN Y++D+H + + ++ Y GES Sbjct: 334 DSRRIEGDYIFTVEDWRQRKSFEDEIGRNCYYIDVHSGKHKPEH----------YKKGES 383 Query: 359 HGIPYRCLTPRGLRNVLVAGRSISCDRRVLGSVRVMPVCXXXXXXXXXXXXXXXXXXEND 418 HGIPYRCLTP+G++N+L AGR IS D + GS RVMP C ND Sbjct: 384 HGIPYRCLTPKGIKNLLTAGRCISTDEQAFGSTRVMPCCLVTGEAAGMAAAHAIKQTRND 443 Query: 419 VHAVDVALLRKRLKEEGAYL 438 VH +D + LRKRLKEEG + Sbjct: 444 VHKIDTSYLRKRLKEEGQLI 463 >A6PNA6.1 A6PNA6_9BACT FAD dependent oxidoreductase Length = 445 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 199/441 (45%), Positives = 258/441 (58%), Gaps = 4/441 (0%) Query: 1 LKSKEIPLNSSFDVIVVXXXXXXXXXXXXXXXXXXSTLLIEAXXXXXXXXXXXXVPAWCP 60 L SK+IPL+S +DVIVV TL+IE +PAWCP Sbjct: 5 LISKQIPLSSGWDVIVVGGGPAGSTAAAAASRLGAKTLVIEQTGALGGMGTQGLLPAWCP 64 Query: 61 FSDKQKMIYRGLAAKVFDTLKGQMPHVHADALDWVPIEPEKLKRVYDDLVTEAGASVLFL 120 FSD +KMIYRGLA VF+ +P LDWVPI+ E LKRVYD +VTE GA VLF Sbjct: 65 FSDGEKMIYRGLAEVVFNRASAFVPQNEPGKLDWVPIDTEGLKRVYDGIVTENGAEVLFH 124 Query: 121 TTLADVERDEDGNVTAIVVLNKGGLQAFRAKVYVDCTGDGDVAAWAGAEYQKGDAVTGEL 180 + + VE+ D + A++V NK GL A++AK YVD TGDGD+AAWAGA+++ G+ TG+L Sbjct: 125 SFVCGVEKKSDREIDALIVGNKRGLTAYQAKTYVDATGDGDIAAWAGADFEIGEKGTGKL 184 Query: 181 QPATHCFILGNVDDYAYLNG--QNLHAENPLSPIHEAYQSGAYPGIPDTHLCNNLVAPRS 238 Q +T CF L NVD + Y + +H +P S IH+ +P I HLCNN V P + Sbjct: 185 QLSTLCFHLDNVDSFYYPHTVRNFIHGGDPRSVIHDIMADPEFPSINHPHLCNNFVGPST 244 Query: 239 VGFNAGHLWGVDNTDTFTVSNAMIEGRRMAAAYRDMLAAVQPSAFGNAFVMSTGTLIGTR 298 VG+NAGHL +D +VS MI GR++ + YR+ LA P AFG A + +T L+G R Sbjct: 245 VGYNAGHL-ALDTLSPESVSRGMIAGRKLVSDYRNALAKHAPDAFGGAHIAATANLMGVR 303 Query: 299 ESRRIIGDYILTAEDYIGRKSFEDEICRNSYFLDIHGNQEEQQNGTGSSLSITLY-GPGE 357 E RRI GDY+L+ DY+ R+SF+DEI RNSYF+DIHG + + L + GE Sbjct: 304 EGRRIRGDYVLSWRDYVERRSFDDEIGRNSYFIDIHGGDSSITSEAQALLKEKGHCEKGE 363 Query: 358 SHGIPYRCLTPRGLRNVLVAGRSISCDRRVLGSVRVMPVCXXXXXXXXXXXXXXXXXXEN 417 SHGIPYR L P L N+L++GR IS DR V GS+RVMPVC Sbjct: 364 SHGIPYRSLVPEKLDNLLLSGRCISSDRIVYGSIRVMPVCLVTGEAAGTAAGLAVKSGVL 423 Query: 418 DVHAVDVALLRKRLKEEGAYL 438 ++H DV LR L + AY+ Sbjct: 424 NLHHADVTELRAELLKNSAYI 444 >B7B5G2.1 B7B5G2_9PORP Putative uncharacterized protein Length = 466 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 197/434 (45%), Positives = 255/434 (58%), Gaps = 14/434 (3%) Query: 2 KSKEIPLNSSFDVIVVXXXXXXXXXXXXXXXXXXSTLLIEAXXXXXXXXXXXXVPAWCPF 61 KSK IP+ +DVIVV TLLIE + AWCPF Sbjct: 44 KSK-IPVYDEWDVIVVGGGPSGCAAATAAAREGAKTLLIEGTGALGGMGTSGLLNAWCPF 102 Query: 62 SDKQKMIYRGLAAKVFDTLKGQMPHVHADALDWVPIEPEKLKRVYDDLVTEAGASVLFLT 121 +D +K+IY+G+A +VF K +PH+H D +WVPI E LK VYDDLVT G SVLF T Sbjct: 103 TDGEKIIYKGIAERVFSESKKGVPHIHYD--NWVPINGEYLKVVYDDLVTTEGVSVLFFT 160 Query: 122 TLADVERDEDGNVTAIVVLNKGGLQAFRAKVYVDCTGDGDVAAWAGAEYQKGDAVTGELQ 181 T+A VE G V AIVV NK GL ++AKV++DCTGDGD+AAWAGA++ GD +G +Q Sbjct: 161 TMAAVEMKRKGVVDAIVVANKAGLSTYKAKVFIDCTGDGDLAAWAGADFVMGDE-SGSVQ 219 Query: 182 PATHCFILGNVDDYAYLNGQNLHAENPLSPIHEAYQSGAYPGIPDTHLCNNLVAPRSVGF 241 T CF L NVD Y + N+H SPIH Y + YP + D H+ + L+ P +GF Sbjct: 220 EGTLCFTLSNVDPYEFSLIGNVHTNRANSPIHSIYGNPKYPLVKDKHMNDKLIGPGFLGF 279 Query: 242 NAGHLWGVDNTDTFTVSNAMIEGRRMAAAYRDMLAAVQPSAFGNAFVMSTGTLIGTRESR 301 NAGH+ VD+TD +++ AM++GR++A + L +P +FG +F+ ST L+G RESR Sbjct: 280 NAGHV-TVDSTDPASLTEAMMKGRKLARQLHEGLVEFEPKSFGASFLASTANLMGIRESR 338 Query: 302 RIIGDYILTAEDYIGRKSFEDEICRNSYFLDIHGNQEEQQNGTGSSLSITLYGPGESHGI 361 RI DY T ED++ RK FED I RN Y++D+H +Q+ T Y GESHGI Sbjct: 339 RIKCDYTFTLEDWLARKEFEDGIGRNCYYIDVH-----KQDAT----VYPRYKKGESHGI 389 Query: 362 PYRCLTPRGLRNVLVAGRSISCDRRVLGSVRVMPVCXXXXXXXXXXXXXXXXXXENDVHA 421 P+ CLTP GL+NV+VAGR IS D GS+RVMP D+H Sbjct: 390 PFSCLTPAGLKNVMVAGRCISTDSYAHGSLRVMPPSLVTGEAVGVAAGQICKSKSPDIHN 449 Query: 422 VDVALLRKRLKEEG 435 VD+ LRKRLKE G Sbjct: 450 VDIQQLRKRLKEVG 463 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,482,953,276 Number of extensions: 104901101 Number of successful extensions: 220618 Number of sequences better than 1.0e-05: 231 Number of HSP's gapped: 220202 Number of HSP's successfully gapped: 257 Length of query: 453 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 314 Effective length of database: 1,751,175,118 Effective search space: 549868987052 Effective search space used: 549868987052 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)