BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0081.p (201 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K728.1 B3K728_9BACI Ig domain protein group 2 domain protein 134 4e-30 B1D599.1 B1D599_9BACL S-layer domain protein 125 2e-27 B1D8E2.1 B1D8E2_9BACL Coagulation factor 5/8 type domain protein 119 1e-25 B0NDZ0.1 B0NDZ0_EUBSP Putative uncharacterized protein 115 3e-24 C0FT31.1 C0FT31_9FIRM Putative uncharacterized protein 114 5e-24 >B3K728.1 B3K728_9BACI Ig domain protein group 2 domain protein Length = 1071 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 84/167 (50%), Positives = 105/167 (62%), Gaps = 18/167 (10%) Query: 36 TTYYVDSALGNDNAAGNSETSAWKTLTKVNTVTFNPGDRILLKAGGVWSNQYLDLKGSGT 95 TTYYVDS G+D G S+ SAW++L KVN TF PGD+IL KAG W N L KGSG+ Sbjct: 35 TTYYVDSTGGDDGNNGTSQDSAWRSLDKVNATTFAPGDKILFKAGESW-NGRLWPKGSGS 93 Query: 96 EGSPIVVD--GSGSKPLIHFGNTSVNGEGFGVRLRNVSYWEINNLEITSGEQLTDMR--- 150 G+PI++D GSGSKPLI + E V L+N YWEINNLE+T+ L R Sbjct: 94 SGNPIIIDMYGSGSKPLI----AGITSELEAVFLKNQEYWEINNLEVTNSSPLPFDRDWE 149 Query: 151 -----RQGVLVVGEGSGAGNFRHIYIKNLNIHDIFGT-DRRTGGINF 191 R+GV ++ E +G N HIYIKN+NIHD+ G+ R+GGI F Sbjct: 150 NPRGQRRGVYILNEEAGLLN--HIYIKNMNIHDVDGSYTTRSGGIIF 194 >B1D599.1 B1D599_9BACL S-layer domain protein Length = 1682 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/160 (48%), Positives = 96/160 (60%), Gaps = 25/160 (15%) Query: 36 TTYYVDSALGNDNAAGNSETSAWKTLTKVNTVTFNPGDRILLKAGGVWSNQYLDLKGSGT 95 TTYYVDSA G+D G SE +AWK+LTKV+ TF PGDRILLKAG W+ + L GSG Sbjct: 44 TTYYVDSAGGDDGNDGLSEEAAWKSLTKVSVATFQPGDRILLKAGSEWTGEQLHPLGSGV 103 Query: 96 EGSPIVVD---GSGSKPLIHFGNTSVNGEGF---GVRLRNVSYWEINNLEITS------- 142 EGSPI +D G+GSKP +NG G V N YW+I+NLEIT+ Sbjct: 104 EGSPITIDSYGGAGSKP-------KLNGAGVIDSVVEFYNQQYWDIHNLEITNTAAGAPQ 156 Query: 143 -GEQLTDMRRQGVLVVGEGSGAGNFRHIYIKNLNIHDIFG 181 +L D+R G+ V G+ AG +H YI +NIHD+ G Sbjct: 157 DPSKLADLR--GMHVTGQ--DAGVLKHFYISGVNIHDVTG 192 >B1D8E2.1 B1D8E2_9BACL Coagulation factor 5/8 type domain protein Length = 710 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 80/187 (42%), Positives = 107/187 (57%), Gaps = 31/187 (16%) Query: 36 TTYYVDSALGNDNAAGNSETSAWKTLTKVNTVTFNPGDRILLKAGGVWSNQYLDLKGSGT 95 TTYYVDSA G+D+ G S ++ WKTL KVN TF PGD+IL K+GGVW+ Q L KGSGT Sbjct: 31 TTYYVDSASGSDSNNGTSTSTPWKTLDKVNATTFQPGDQILFKSGGVWNGQ-LWPKGSGT 89 Query: 96 EGSPIVVD--GSGSKPLIHFGNTSVNGEGFG-VRLRNVSYWEINNLEITSGEQLT-DMR- 150 GSPI +D G ++P+I+ G T+ + G V LRN YWEI+NLE+T+ + + D+ Sbjct: 90 VGSPIKIDKYGGTARPIINGGGTARAYQSTGAVMLRNQEYWEISNLEVTNDDNFSVDLTT 149 Query: 151 -----------RQGVLVVGE-----GSGAGNFRHIYIKNLNIHDI---------FGTDRR 185 R G+LVV + G G HIYI + +HD+ +G Sbjct: 150 VTYANSKPSNIRDGILVVLDTDLVPAGGDGVMDHIYIHDNYVHDVDSPNAWPNQYGNASF 209 Query: 186 TGGINFH 192 GGI F+ Sbjct: 210 NGGIMFY 216 >B0NDZ0.1 B0NDZ0_EUBSP Putative uncharacterized protein Length = 1430 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 69/158 (43%), Positives = 93/158 (58%), Gaps = 18/158 (11%) Query: 37 TYYVDSALGNDNAAGNSETSAWKTLTKVNTVTFNPGDRILLKAGGVWSNQYLDLKGSGTE 96 TYYVD GND +G SE AW +L KVN TF PGD++L + G W Q L KGSG E Sbjct: 43 TYYVDQDGGNDANSGTSEKEAWSSLEKVNETTFQPGDKLLFEKGDEWVGQ-LSPKGSGEE 101 Query: 97 GSPIVVDGSG---SKPLIHFGN-TSVNGEGFGVRLRNVS-------YWEINNLEITS--- 142 G+PIV+ G +PLI N NG+ R+ N + YWEI +LE+T+ Sbjct: 102 GNPIVIGSYGDGNERPLISGNNWCGENGDDLENRIFNAAVYFYNQQYWEITDLEVTNRIP 161 Query: 143 GEQLTD-MRRQGVLVVGEGSGAGNFRHIYIKNLNIHDI 179 G+ D +++ GVL++GE AG RH+Y KNL++HD+ Sbjct: 162 GDNPDDHIKKYGVLIMGE--DAGTLRHMYCKNLDVHDV 197 >C0FT31.1 C0FT31_9FIRM Putative uncharacterized protein Length = 853 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 79/198 (39%), Positives = 104/198 (52%), Gaps = 43/198 (21%) Query: 36 TTYYVDSALGNDNAAGNSETSAWKTLTKVNTVTFNPGDRILLKAGGVWSNQYLDLKGSGT 95 TTYYVD+ G+D+ +G S + WK+L KV TF PGD+ILLK+G VW+ ++L KGSG Sbjct: 30 TTYYVDAENGDDSNSGTSIDAPWKSLNKVTDTTFLPGDQILLKSGSVWNGEWLWPKGSGV 89 Query: 96 EGSPIVVDGSG--SKPLIHFGNTSVNGEGF--------GVRLRNVSYWEINNLEITSGEQ 145 EG+PI++D G KP+I NG G V LRN YWEI NLEIT+ + Sbjct: 90 EGAPIIIDKYGGEEKPII-------NGMGIDRGLNYSGAVHLRNQEYWEIRNLEITNDDD 142 Query: 146 LT-----------------DMRRQGVLVV-----GEGSGAGNFRHIYIKNLNIHDIFGT- 182 +M R G+L++ E G HIYI+N +HD+ G Sbjct: 143 FDEDIDLSRPKGDNSWSSKNMTRNGILLIVDCDQLEDDDDGIMDHIYIENCYVHDVDGPN 202 Query: 183 ---DRRTGGINFHWPASS 197 D TGGI F+ SS Sbjct: 203 DWNDTFTGGIIFNVVGSS 220 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.133 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,150,180,159 Number of extensions: 53183453 Number of successful extensions: 78231 Number of sequences better than 1.0e-05: 66 Number of HSP's gapped: 78163 Number of HSP's successfully gapped: 66 Length of query: 201 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 72 Effective length of database: 1,845,385,268 Effective search space: 132867739296 Effective search space used: 132867739296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 128 (53.9 bits)