BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0307.0080.p
         (122 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KLU6.1 B3KLU6_9BACI Helix-turn-helix domain protein                 108   1e-22
C1PV62.1 C1PV62_ALIAC Helix-turn-helix protein                         61   3e-08
Q8R5Q1.1 Q8R5Q1_THETN Predicted Transcriptional regulator              58   3e-07
C0ECX8.1 C0ECX8_9CLOT Putative uncharacterized protein                 57   6e-07
B0KD49.1 B0KD49_THEP3 Transcriptional regulator, XRE family            57   8e-07

>B3KLU6.1 B3KLU6_9BACI Helix-turn-helix domain protein
          Length = 121

 Score =  108 bits (270), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 66/80 (82%), Gaps = 1/80 (1%)

Query: 1  MHSIYERIEYLIKRQGLTKKAFSEQLKISTGNMGDWKRGKSTPGTHKLIEIAAFFDVSLD 60
          M SIY+RIE+LI+ +G+TKKAF E L ISTGN GDWKRGK+TP T+KLIEIAAFF VSLD
Sbjct: 1  MQSIYQRIEHLIESRGMTKKAFCETLGISTGNFGDWKRGKTTPSTNKLIEIAAFFSVSLD 60

Query: 61 WLILGKQNANT-LKESGEDY 79
          WLI+G+ +  + +KE+  +Y
Sbjct: 61 WLIIGRGSPTSRVKEARGEY 80


>C1PV62.1 C1PV62_ALIAC Helix-turn-helix protein
          Length = 163

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 47/70 (67%)

Query: 1  MHSIYERIEYLIKRQGLTKKAFSEQLKISTGNMGDWKRGKSTPGTHKLIEIAAFFDVSLD 60
          M +  ER+  L + +GL++ A +EQLK++ G + ++++G   P    L ++A FFDVS+D
Sbjct: 2  MMTFGERLAQLRRSKGLSQYALAEQLKMTRGQIANYEQGTREPDIETLKKLADFFDVSID 61

Query: 61 WLILGKQNAN 70
          +L+LGK N +
Sbjct: 62 FLVLGKPNVS 71


>Q8R5Q1.1 Q8R5Q1_THETN Predicted Transcriptional regulator
          Length = 123

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 1  MHSIYERIEYLIKRQGLTKKAFSEQLKISTGNMGDWKRGKSTPGTHKLIEIAAFFDVSLD 60
          M+S+ ERI Y  K+  LT  A S+   +S GN+ D +  KS P ++ LI++    +VS+D
Sbjct: 1  MNSVGERIRYARKKNNLTIPALSKLTGLSPGNLSDLENNKSMPSSNALIKLKNALNVSID 60

Query: 61 WLILGKQNANTLKESGEDY 79
          WL+ G+   + +KE  E Y
Sbjct: 61 WLLTGEM-PSEVKEEEEKY 78


>C0ECX8.1 C0ECX8_9CLOT Putative uncharacterized protein
          Length = 112

 Score = 56.6 bits (135), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 41/58 (70%)

Query: 6  ERIEYLIKRQGLTKKAFSEQLKISTGNMGDWKRGKSTPGTHKLIEIAAFFDVSLDWLI 63
          +RI  LIK+ G T KA +  L++S   + +WK+GK+ P T  ++++A +FDVS+D+L+
Sbjct: 7  DRILNLIKKSGKTDKAITLDLELSNSAISEWKKGKAFPKTDAIVKLAQYFDVSVDYLL 64


>B0KD49.1 B0KD49_THEP3 Transcriptional regulator, XRE family
          Length = 132

 Score = 56.6 bits (135), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 42/67 (62%)

Query: 1  MHSIYERIEYLIKRQGLTKKAFSEQLKISTGNMGDWKRGKSTPGTHKLIEIAAFFDVSLD 60
          M ++ ERI+Y  K+  LT  A S+   +S GN+ D +  KS P ++ LI++    +VS+D
Sbjct: 1  MDTVGERIKYARKKNNLTITALSKLTGLSVGNLSDLENNKSMPSSNALIKLKNALNVSID 60

Query: 61 WLILGKQ 67
          WL+ G+Q
Sbjct: 61 WLLTGQQ 67


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 699,600,151
Number of extensions: 24230666
Number of successful extensions: 46453
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 46529
Number of HSP's successfully gapped: 14
Length of query: 122
Length of database: 3,060,696,203
Length adjustment: 88
Effective length of query: 34
Effective length of database: 2,231,646,883
Effective search space: 75875994022
Effective search space used: 75875994022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)