BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0307.0077.p
         (121 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KLU6.1 B3KLU6_9BACI Helix-turn-helix domain protein                 132   8e-30
Q8R5Q1.1 Q8R5Q1_THETN Predicted Transcriptional regulator              58   3e-07
A7VVX4.1 A7VVX4_9CLOT Putative uncharacterized protein                 55   1e-06
A5KP72.1 A5KP72_9FIRM Putative uncharacterized protein                 55   2e-06
C2ZSK5.1 C2ZSK5_BACCE Helix-turn-helix domain protein                  54   5e-06

>B3KLU6.1 B3KLU6_9BACI Helix-turn-helix domain protein
          Length = 121

 Score =  132 bits (333), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 65/121 (53%), Positives = 84/121 (69%), Gaps = 1/121 (0%)

Query: 1   MQSIYERIEYLIKQKGITKKKFCEQLNISTGNMGDWKRGKSTPGTHKLIEIGAFFQVSLD 60
           MQSIY+RIE+LI+ +G+TKK FCE L ISTGN GDWKRGK+TP T+KLIEI AFF VSLD
Sbjct: 1   MQSIYQRIEHLIESRGMTKKAFCETLGISTGNFGDWKRGKTTPSTNKLIEIAAFFSVSLD 60

Query: 61  WLILGKKTP-EMVREGSEDYFFGQLRQLNCQSDELKPEEQNFIKEYFEFTQYRKQKETEE 119
           WLI+G+ +P   V+E   +Y              L   E+ FI+EY EF+ YRK K +++
Sbjct: 61  WLIIGRGSPTSRVKEARGEYEVDPESLDPALMSGLAEHEKEFIREYIEFSAYRKDKRSDK 120

Query: 120 N 120
           +
Sbjct: 121 S 121


>Q8R5Q1.1 Q8R5Q1_THETN Predicted Transcriptional regulator
          Length = 123

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 1/99 (1%)

Query: 1  MQSIYERIEYLIKQKGITKKKFCEQLNISTGNMGDWKRGKSTPGTHKLIEIGAFFQVSLD 60
          M S+ ERI Y  K+  +T     +   +S GN+ D +  KS P ++ LI++     VS+D
Sbjct: 1  MNSVGERIRYARKKNNLTIPALSKLTGLSPGNLSDLENNKSMPSSNALIKLKNALNVSID 60

Query: 61 WLILGKKTPEMVREGSEDYFFGQLRQLNCQSDELKPEEQ 99
          WL+ G + P  V+E  E Y   +   L  ++ +  PEE+
Sbjct: 61 WLLTG-EMPSEVKEEEEKYSVDKSEDLLLKAIKELPEER 98


>A7VVX4.1 A7VVX4_9CLOT Putative uncharacterized protein
          Length = 118

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 70/123 (56%), Gaps = 15/123 (12%)

Query: 4   IYERIEYLIKQKGITKKKFCEQLNISTGNMGDWKRGKSTP-GTHKLIEIGAFFQVSLDWL 62
           +Y RIE L K +GI   + C++  I  GN+ D K G++    T  L +I  +FQVS+D+L
Sbjct: 1   MYNRIEDLCKSQGINMTQMCKEAGIPRGNLTDLKNGRTAILSTKNLGKISNYFQVSMDYL 60

Query: 63  ILG--KKTP-------EMVREGSEDYFFGQLRQLNCQSDELKPEEQNFIKEYFEFTQYRK 113
           +    KK P       ++  EG +   FG+++++   +DE K +  ++IK  F+ +Q ++
Sbjct: 61  LGNEQKKEPTTKSDELDLQLEGIDFALFGEVKEM---TDEQKQDVLDYIK--FKKSQQKR 115

Query: 114 QKE 116
           ++E
Sbjct: 116 EQE 118


>A5KP72.1 A5KP72_9FIRM Putative uncharacterized protein
          Length = 146

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 43/69 (62%)

Query: 2  QSIYERIEYLIKQKGITKKKFCEQLNISTGNMGDWKRGKSTPGTHKLIEIGAFFQVSLDW 61
          Q +YE  E L+++ G++  K  +   ++   + DWKRG+STP +  + ++  +F VS+D+
Sbjct: 7  QKMYEIFEQLLQKYGVSAYKVAKATGVTQSTLSDWKRGRSTPKSENMKKLADYFGVSIDY 66

Query: 62 LILGKKTPE 70
          L+ GK+  E
Sbjct: 67 LMTGKEETE 75


>C2ZSK5.1 C2ZSK5_BACCE Helix-turn-helix domain protein
          Length = 277

 Score = 53.9 bits (128), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 2/78 (2%)

Query: 6  ERIEYLIKQKGITKKKFCEQLNISTGNMGDWKRGKSTPGTHKLIEIGAFFQVSLDWLILG 65
          E++  L K+KG++++   E+LN +   +  W+ G+  P T KLI IG  F+VSLD+L+  
Sbjct: 20 EKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLL-- 77

Query: 66 KKTPEMVREGSEDYFFGQ 83
          K+T E   E  E Y+  Q
Sbjct: 78 KETAEQSNENVEGYYVSQ 95


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 766,101,895
Number of extensions: 30038778
Number of successful extensions: 70448
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 70523
Number of HSP's successfully gapped: 47
Length of query: 121
Length of database: 3,060,696,203
Length adjustment: 87
Effective length of query: 34
Effective length of database: 2,241,067,898
Effective search space: 76196308532
Effective search space used: 76196308532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)