BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0072.p (217 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A0RAM6.1 A0RAM6_BACAH DNA-binding response regulator 273 8e-72 A9VI29.1 A9VI29_BACWK Two component transcriptional regulator, L... 271 3e-71 C2SGB6.1 C2SGB6_BACCE Sensory transduction protein ydfI 267 5e-70 C2XQA6.1 C2XQA6_BACCE Sensory transduction protein ydfI 266 1e-69 Q73CG3.1 Q73CG3_BACC1 DNA-binding response regulator, LuxR family 265 2e-69 >A0RAM6.1 A0RAM6_BACAH DNA-binding response regulator Length = 219 Score = 273 bits (698), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 130/214 (60%), Positives = 172/214 (80%), Gaps = 2/214 (0%) Query: 4 YKILIVDDHLVVREGLKLILETNEQFQVVGEAENGAEALPMIKELHPDVILMDLNMPVMG 63 Y +LIVDDH VVREGLKLI+ET++ FQ++GEAENG EAL I++ PDVILMDLNMP M Sbjct: 8 YNVLIVDDHFVVREGLKLIIETSDSFQIIGEAENGEEALSFIEKKKPDVILMDLNMPKMS 67 Query: 64 GLETMQELKKQGSSIPVIILTTYNEDDLMISGLAMGAKGYLLKDTSRENLFRNIESAVRG 123 GLET++ L K+ + P+IILTTYNED+LM+ G+ +GAKGYLLKDT RENLFR +E+A+RG Sbjct: 68 GLETIEALNKKQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTDRENLFRTLEAAIRG 127 Query: 124 ETLLSADIMERVITARAQQKDSISPQNEAARLTDKETIILQAVARGFKSKVIAIDMGISE 183 E LL +IME+++ + +K+ + + E LT+KE +L+A+ARG K+K IA DMGI+E Sbjct: 128 EILLQPNIMEKIVNYK--RKEVYADKVEENNLTEKELFVLKAIARGNKNKEIAFDMGIAE 185 Query: 184 RTVKAHLTAIYNKLGVDSRSQAVAVALERGILEM 217 RTVKA+LT IYNKLGV+SRS+AVAV++ER ++ Sbjct: 186 RTVKAYLTNIYNKLGVNSRSEAVAVSIERKLIHF 219 >A9VI29.1 A9VI29_BACWK Two component transcriptional regulator, LuxR family Length = 214 Score = 271 bits (693), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 129/216 (59%), Positives = 172/216 (79%), Gaps = 6/216 (2%) Query: 4 YKILIVDDHLVVREGLKLILETNEQFQVVGEAENGAEALPMIKELHPDVILMDLNMPVMG 63 + +LIVDDH VVREGLKLI+ET++ FQ++GEA NG EAL I++ PDVILMDLNMP M Sbjct: 3 HNVLIVDDHFVVREGLKLIIETSDSFQIIGEAANGEEALSFIEKKKPDVILMDLNMPKMS 62 Query: 64 GLETMQELKKQGSSIPVIILTTYNEDDLMISGLAMGAKGYLLKDTSRENLFRNIESAVRG 123 GLET++ L K+ + P+IILTTYNED+LM+ G+ +GAKGYLLKDT RENLFR +E+A+RG Sbjct: 63 GLETIEALNKKQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTDRENLFRTLEAAIRG 122 Query: 124 ETLLSADIMERVITARAQQ--KDSISPQNEAARLTDKETIILQAVARGFKSKVIAIDMGI 181 E LL +IME+++ + ++ D ++ N LTDKE +L+A+ARG+K+K IA DMGI Sbjct: 123 EILLQPNIMEKIVKYKRKEVHADKVAENN----LTDKELFVLKAIARGYKNKEIAFDMGI 178 Query: 182 SERTVKAHLTAIYNKLGVDSRSQAVAVALERGILEM 217 +ERTVKA+LT IYNKLGV+SRS+AVAV++ER ++ Sbjct: 179 AERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLIHF 214 >C2SGB6.1 C2SGB6_BACCE Sensory transduction protein ydfI Length = 207 Score = 267 bits (683), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 127/211 (60%), Positives = 168/211 (79%), Gaps = 6/211 (2%) Query: 9 VDDHLVVREGLKLILETNEQFQVVGEAENGAEALPMIKELHPDVILMDLNMPVMGGLETM 68 +DDH VVREGLKLI+ET++ FQ++GEA NG EAL I++ PDVILMDLNMP M GLET+ Sbjct: 1 MDDHFVVREGLKLIIETSDSFQIIGEAANGEEALSFIEKKKPDVILMDLNMPKMSGLETI 60 Query: 69 QELKKQGSSIPVIILTTYNEDDLMISGLAMGAKGYLLKDTSRENLFRNIESAVRGETLLS 128 + L K+ + P+IILTTYNED+LM+ G+ +GAKGYLLKDT RENLFR +E+A+RGE LL Sbjct: 61 EALNKKQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTDRENLFRTLEAAIRGEILLQ 120 Query: 129 ADIMERVITARAQQ--KDSISPQNEAARLTDKETIILQAVARGFKSKVIAIDMGISERTV 186 +IME+++ + ++ D ++ N LTDKE +L+A+ARG+K+K IA DMGI+ERTV Sbjct: 121 PNIMEKIVKYKRKEVHADKVAENN----LTDKELFVLKAIARGYKNKEIAFDMGIAERTV 176 Query: 187 KAHLTAIYNKLGVDSRSQAVAVALERGILEM 217 KAHLT IYNKLGV+SRS+AVAV++ER ++ Sbjct: 177 KAHLTNIYNKLGVNSRSEAVAVSIERKLIHF 207 >C2XQA6.1 C2XQA6_BACCE Sensory transduction protein ydfI Length = 207 Score = 266 bits (679), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 126/209 (60%), Positives = 169/209 (80%), Gaps = 2/209 (0%) Query: 9 VDDHLVVREGLKLILETNEQFQVVGEAENGAEALPMIKELHPDVILMDLNMPVMGGLETM 68 +DDH VVREGLKLI+ET++ FQ++GEA NG EAL I++ PDVILMDLNMP M GLET+ Sbjct: 1 MDDHFVVREGLKLIIETSDSFQIIGEAANGEEALSFIEKKEPDVILMDLNMPKMSGLETI 60 Query: 69 QELKKQGSSIPVIILTTYNEDDLMISGLAMGAKGYLLKDTSRENLFRNIESAVRGETLLS 128 + L K+ + P+IILTTYNED+LM+ G+ +GAKGYLLKDT RENLFR +E+A+RGE LL Sbjct: 61 EALNKKQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTDRENLFRTLEAAIRGEILLQ 120 Query: 129 ADIMERVITARAQQKDSISPQNEAARLTDKETIILQAVARGFKSKVIAIDMGISERTVKA 188 DIME+++ + ++K+ + + E LT+KE +L+A+ARG+K+K IA DMGI+ERTVKA Sbjct: 121 PDIMEKIV--KYKRKEVHADKVEGNNLTEKELFVLKAIARGYKNKEIAFDMGIAERTVKA 178 Query: 189 HLTAIYNKLGVDSRSQAVAVALERGILEM 217 +LT IYNKLGV+SRS+AVAV++ER ++ Sbjct: 179 YLTNIYNKLGVNSRSEAVAVSIERKLIHF 207 >Q73CG3.1 Q73CG3_BACC1 DNA-binding response regulator, LuxR family Length = 214 Score = 265 bits (678), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 128/214 (59%), Positives = 170/214 (79%), Gaps = 2/214 (0%) Query: 4 YKILIVDDHLVVREGLKLILETNEQFQVVGEAENGAEALPMIKELHPDVILMDLNMPVMG 63 Y +LIVDDH VVREGLKLI+ET++ FQ++GEA NG EAL I++ PDVILMDLNMP M Sbjct: 3 YNVLIVDDHFVVREGLKLIIETSDSFQIIGEATNGEEALSFIEKKKPDVILMDLNMPKMS 62 Query: 64 GLETMQELKKQGSSIPVIILTTYNEDDLMISGLAMGAKGYLLKDTSRENLFRNIESAVRG 123 GLET++ L K+ + P+IILTTYNED+LM+ G+ +GAKGYLLKDT RENLFR +E+A+RG Sbjct: 63 GLETIEVLNKKQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTDRENLFRTLEAAIRG 122 Query: 124 ETLLSADIMERVITARAQQKDSISPQNEAARLTDKETIILQAVARGFKSKVIAIDMGISE 183 E LL +IME+++ + +K+ + E LT+KE +L+A+ARG K+K IA DMGI+E Sbjct: 123 EILLQPNIMEKIVNYK--RKEIHANVVEENNLTEKELFVLKAIARGNKNKDIAFDMGIAE 180 Query: 184 RTVKAHLTAIYNKLGVDSRSQAVAVALERGILEM 217 RTVKA+LT IYNKLGV+SRS+AVAV++E+ ++ Sbjct: 181 RTVKAYLTNIYNKLGVNSRSEAVAVSIEKKLIHF 214 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,100,283,326 Number of extensions: 40879292 Number of successful extensions: 216373 Number of sequences better than 1.0e-05: 26590 Number of HSP's gapped: 210975 Number of HSP's successfully gapped: 26630 Length of query: 217 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 87 Effective length of database: 1,835,964,253 Effective search space: 159728890011 Effective search space used: 159728890011 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)