BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0071.p (160 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q5KZ16.1 Q5KZ16_GEOKA Glutathione peroxidase 241 1e-62 B4BMP1.1 B4BMP1_9BACI Glutathione peroxidase 241 1e-62 C5DAQ3.1 C5DAQ3_9BACI Glutathione peroxidase EC=1.11.1.9 240 3e-62 B7Y6L5.1 B7Y6L5_9BACI Glutathione peroxidase 240 3e-62 C2W7G2.1 C2W7G2_BACCE Glutathione peroxidase 237 2e-61 >Q5KZ16.1 Q5KZ16_GEOKA Glutathione peroxidase Length = 158 Score = 241 bits (616), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 105/158 (66%), Positives = 134/158 (84%) Query: 1 MSIYDYEANTLRGQEESLSKYKGKVLLVVNTASKCGFTPQYKGLQEVYDKFKDRGFEVLG 60 MS+Y++ T+RG+E+ LS Y+GKVLL+VNTAS+CGFTPQYK LQE+YD+++DRGF VLG Sbjct: 1 MSVYEFSVKTIRGEEQPLSAYRGKVLLIVNTASRCGFTPQYKELQELYDEYRDRGFVVLG 60 Query: 61 FPSNQFAGQEPGESEDIAEFCEINYGVTFPMYEKIDVKGDGAHPLFKYLSKEAPGVLGSK 120 FP NQF GQEPG +I +FC++NYGVTFP++ K+DV GD AHPLF+YL +EAPG LG+K Sbjct: 61 FPCNQFGGQEPGTEAEIEQFCQLNYGVTFPLFAKVDVNGDHAHPLFQYLKEEAPGALGTK 120 Query: 121 SIKWNFTKFLVDQEGRVLKRFAPQTTPDQIEADIAKLL 158 +IKWNFTKFLVD+ GRV+ RFAPQT P +++ DI KLL Sbjct: 121 AIKWNFTKFLVDRHGRVVARFAPQTKPSELKEDIEKLL 158 >B4BMP1.1 B4BMP1_9BACI Glutathione peroxidase Length = 158 Score = 241 bits (616), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 104/158 (65%), Positives = 136/158 (86%) Query: 1 MSIYDYEANTLRGQEESLSKYKGKVLLVVNTASKCGFTPQYKGLQEVYDKFKDRGFEVLG 60 MS+Y++ A T+RG+E+SLS Y+G VLL+VNTAS+CG TPQY+ LQE+YD+++DRGF VLG Sbjct: 1 MSVYEFSAKTIRGEEQSLSAYRGDVLLIVNTASRCGLTPQYQELQELYDEYRDRGFVVLG 60 Query: 61 FPSNQFAGQEPGESEDIAEFCEINYGVTFPMYEKIDVKGDGAHPLFKYLSKEAPGVLGSK 120 FP NQF GQEPG E+I +FC++NYGVTFPM+ K+DV GD AHPLF+YL ++APG LG+K Sbjct: 61 FPCNQFGGQEPGTEEEIEQFCQLNYGVTFPMFAKVDVNGDNAHPLFQYLKEQAPGALGTK 120 Query: 121 SIKWNFTKFLVDQEGRVLKRFAPQTTPDQIEADIAKLL 158 +IKWNFTKFLVD++GRV+ RFAPQT P +++ +I KLL Sbjct: 121 AIKWNFTKFLVDRDGRVVARFAPQTKPSELKKEIEKLL 158 >C5DAQ3.1 C5DAQ3_9BACI Glutathione peroxidase EC=1.11.1.9 Length = 158 Score = 240 bits (613), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 105/158 (66%), Positives = 135/158 (85%) Query: 1 MSIYDYEANTLRGQEESLSKYKGKVLLVVNTASKCGFTPQYKGLQEVYDKFKDRGFEVLG 60 MSIYD+ T+RG+E+SL+ YKGKVLL+VNTASKCGFTPQYK LQE+Y++++DRGF VLG Sbjct: 1 MSIYDFRVKTIRGEEQSLADYKGKVLLIVNTASKCGFTPQYKELQELYEQYRDRGFVVLG 60 Query: 61 FPSNQFAGQEPGESEDIAEFCEINYGVTFPMYEKIDVKGDGAHPLFKYLSKEAPGVLGSK 120 FP NQF QEPG E+I +FC++NYGVTFPM+ K+DV G+ AHPLF+YL ++APGVLG+K Sbjct: 61 FPCNQFGNQEPGTEEEIEQFCQVNYGVTFPMFAKVDVNGENAHPLFQYLKEKAPGVLGTK 120 Query: 121 SIKWNFTKFLVDQEGRVLKRFAPQTTPDQIEADIAKLL 158 +IKWNFTKFLVD+ G V+ RFAPQT P ++ +++ KLL Sbjct: 121 AIKWNFTKFLVDRNGNVVARFAPQTRPSELISEMEKLL 158 >B7Y6L5.1 B7Y6L5_9BACI Glutathione peroxidase Length = 158 Score = 240 bits (612), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 104/158 (65%), Positives = 134/158 (84%) Query: 1 MSIYDYEANTLRGQEESLSKYKGKVLLVVNTASKCGFTPQYKGLQEVYDKFKDRGFEVLG 60 MS+Y++ A T+RG+E+ LS Y+G VLL+VNTAS+CGFTPQYK LQE+YD+++DRGF VLG Sbjct: 1 MSVYEFSAKTIRGEEQPLSVYRGNVLLIVNTASRCGFTPQYKELQELYDEYRDRGFVVLG 60 Query: 61 FPSNQFAGQEPGESEDIAEFCEINYGVTFPMYEKIDVKGDGAHPLFKYLSKEAPGVLGSK 120 FP NQF GQEPG E+I +FC++NYGVTFP++ K+DV GD AHPLF+YL +EAPG LG+K Sbjct: 61 FPCNQFGGQEPGTEEEIEQFCQLNYGVTFPLFAKVDVNGDNAHPLFQYLKEEAPGALGTK 120 Query: 121 SIKWNFTKFLVDQEGRVLKRFAPQTTPDQIEADIAKLL 158 +IKWNFTKFLVD+ G+V+ RFAPQT P ++ +I KLL Sbjct: 121 AIKWNFTKFLVDRNGKVVARFAPQTKPSELRKEIEKLL 158 >C2W7G2.1 C2W7G2_BACCE Glutathione peroxidase Length = 158 Score = 237 bits (605), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 99/158 (62%), Positives = 136/158 (86%) Query: 1 MSIYDYEANTLRGQEESLSKYKGKVLLVVNTASKCGFTPQYKGLQEVYDKFKDRGFEVLG 60 M++YD+ A T+ G+E+SL +Y+GKVLL+VN ASKCGFTPQYKGLQ +Y+K+K++G E+LG Sbjct: 1 MTVYDFSAKTITGEEKSLREYEGKVLLIVNVASKCGFTPQYKGLQAIYEKYKEQGLEILG 60 Query: 61 FPSNQFAGQEPGESEDIAEFCEINYGVTFPMYEKIDVKGDGAHPLFKYLSKEAPGVLGSK 120 FP NQF GQEPG E+I FCE+NYGV+FPM+ K+DVKGDGAHPL+ Y++++APG+LG K Sbjct: 61 FPCNQFGGQEPGTEEEITSFCELNYGVSFPMFAKVDVKGDGAHPLYTYMTEQAPGILGMK 120 Query: 121 SIKWNFTKFLVDQEGRVLKRFAPQTTPDQIEADIAKLL 158 ++KWNFTKFL+ ++G+V+ RFAPQT P ++E +I K+L Sbjct: 121 AVKWNFTKFLIGRDGKVIDRFAPQTKPGELEKEIGKVL 158 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.137 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,007,389,155 Number of extensions: 42536199 Number of successful extensions: 90273 Number of sequences better than 1.0e-05: 1731 Number of HSP's gapped: 88359 Number of HSP's successfully gapped: 1732 Length of query: 160 Length of database: 3,060,696,203 Length adjustment: 121 Effective length of query: 39 Effective length of database: 1,920,753,388 Effective search space: 74909382132 Effective search space used: 74909382132 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 125 (52.8 bits)