BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0070.p (139 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2VHI1.1 C2VHI1_BACCE Organic hydroperoxide resistance protein 162 1e-38 C2V166.1 C2V166_BACCE Organic hydroperoxide resistance protein 162 1e-38 C2U3B1.1 C2U3B1_BACCE Organic hydroperoxide resistance protein 162 1e-38 C2N6Y6.1 C2N6Y6_BACCE Organic hydroperoxide resistance protein 162 1e-38 C3B8H9.1 C3B8H9_BACMY Organic hydroperoxide resistance protein 161 1e-38 >C2VHI1.1 C2VHI1_BACCE Organic hydroperoxide resistance protein Length = 138 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 82/138 (59%), Positives = 98/138 (71%), Gaps = 1/138 (0%) Query: 1 MKPLYTASATVRGGREGSVESSDGALKHDLKMPKELGGPGGTGTNPEQLFAAGYGACYES 60 M LYTAS T GGR G V S DG L D+KMPK LGG GG TNPEQLFAAGY AC++S Sbjct: 1 MDKLYTASVTATGGRNGKVVSDDGILNLDVKMPKALGGAGGEATNPEQLFAAGYAACFDS 60 Query: 61 ALANIARKEGVKLQDVVVTSNVLIGKDESDGGFKLAVKLDVSLPGIERAKAEDLARKAHE 120 AL + R + VK++ VT++V IGKD +DGGF L+ LDV + G+ A+A++L AH Sbjct: 61 ALQLVIRTKRVKVESTEVTAHVSIGKD-TDGGFGLSAVLDVHVAGVSHAEAQELVEAAHG 119 Query: 121 FCPYSKATRGNIEVELNV 138 CPYSKATRGNIEV LNV Sbjct: 120 VCPYSKATRGNIEVTLNV 137 >C2V166.1 C2V166_BACCE Organic hydroperoxide resistance protein Length = 138 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 82/138 (59%), Positives = 98/138 (71%), Gaps = 1/138 (0%) Query: 1 MKPLYTASATVRGGREGSVESSDGALKHDLKMPKELGGPGGTGTNPEQLFAAGYGACYES 60 M LYTAS T GGR G V S DG L D+KMPK LGG GG TNPEQLFAAGY AC++S Sbjct: 1 MDKLYTASVTATGGRNGKVVSDDGILNLDVKMPKALGGAGGEATNPEQLFAAGYAACFDS 60 Query: 61 ALANIARKEGVKLQDVVVTSNVLIGKDESDGGFKLAVKLDVSLPGIERAKAEDLARKAHE 120 AL + R + VK++ VT++V IGKD +DGGF L+ LDV + G+ A+A++L AH Sbjct: 61 ALQLVIRTKRVKVESTEVTAHVSIGKD-TDGGFGLSAVLDVHVAGVSHAEAQELVEAAHG 119 Query: 121 FCPYSKATRGNIEVELNV 138 CPYSKATRGNIEV LNV Sbjct: 120 VCPYSKATRGNIEVTLNV 137 >C2U3B1.1 C2U3B1_BACCE Organic hydroperoxide resistance protein Length = 138 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 82/138 (59%), Positives = 98/138 (71%), Gaps = 1/138 (0%) Query: 1 MKPLYTASATVRGGREGSVESSDGALKHDLKMPKELGGPGGTGTNPEQLFAAGYGACYES 60 M LYTAS T GGR G V S DG L D+KMPK LGG GG TNPEQLFAAGY AC++S Sbjct: 1 MDKLYTASVTATGGRNGKVVSDDGILNLDVKMPKALGGAGGEATNPEQLFAAGYAACFDS 60 Query: 61 ALANIARKEGVKLQDVVVTSNVLIGKDESDGGFKLAVKLDVSLPGIERAKAEDLARKAHE 120 AL + R + VK++ VT++V IGKD +DGGF L+ LDV + G+ A+A++L AH Sbjct: 61 ALQLVIRTKRVKVESTEVTAHVSIGKD-TDGGFGLSAVLDVHVAGVSHAEAQELVEAAHG 119 Query: 121 FCPYSKATRGNIEVELNV 138 CPYSKATRGNIEV LNV Sbjct: 120 VCPYSKATRGNIEVTLNV 137 >C2N6Y6.1 C2N6Y6_BACCE Organic hydroperoxide resistance protein Length = 138 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 82/138 (59%), Positives = 98/138 (71%), Gaps = 1/138 (0%) Query: 1 MKPLYTASATVRGGREGSVESSDGALKHDLKMPKELGGPGGTGTNPEQLFAAGYGACYES 60 M LYTAS T GGR G V S DG L D+KMPK LGG GG TNPEQLFAAGY AC++S Sbjct: 1 MDKLYTASVTATGGRNGKVVSDDGILNLDVKMPKALGGAGGEATNPEQLFAAGYAACFDS 60 Query: 61 ALANIARKEGVKLQDVVVTSNVLIGKDESDGGFKLAVKLDVSLPGIERAKAEDLARKAHE 120 AL + R + VK++ VT++V IGKD +DGGF L+ LDV + G+ A+A++L AH Sbjct: 61 ALQLVIRTKRVKVESTEVTAHVSIGKD-TDGGFGLSAVLDVHVAGVSHAEAQELVEAAHG 119 Query: 121 FCPYSKATRGNIEVELNV 138 CPYSKATRGNIEV LNV Sbjct: 120 VCPYSKATRGNIEVTLNV 137 >C3B8H9.1 C3B8H9_BACMY Organic hydroperoxide resistance protein Length = 138 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 81/139 (58%), Positives = 99/139 (71%), Gaps = 1/139 (0%) Query: 1 MKPLYTASATVRGGREGSVESSDGALKHDLKMPKELGGPGGTGTNPEQLFAAGYGACYES 60 M+ LYTA+ T GGR G V S DG L D+KMPK LGG GG TNPEQLFAAGY AC++S Sbjct: 1 MEKLYTATVTATGGRNGKVVSEDGILNLDVKMPKALGGMGGKATNPEQLFAAGYAACFDS 60 Query: 61 ALANIARKEGVKLQDVVVTSNVLIGKDESDGGFKLAVKLDVSLPGIERAKAEDLARKAHE 120 AL + R + VK++ VT+++ IGKD +DGGF L+ LDV + G+ A+A +L AH Sbjct: 61 ALQLVIRTKRVKVESTEVTAHISIGKD-TDGGFGLSAVLDVRVAGVSHAEARELVEAAHG 119 Query: 121 FCPYSKATRGNIEVELNVL 139 CPYSKATRGNIEV LNVL Sbjct: 120 VCPYSKATRGNIEVTLNVL 138 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.133 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 852,148,510 Number of extensions: 35227831 Number of successful extensions: 64181 Number of sequences better than 1.0e-05: 898 Number of HSP's gapped: 63196 Number of HSP's successfully gapped: 898 Length of query: 139 Length of database: 3,060,696,203 Length adjustment: 103 Effective length of query: 36 Effective length of database: 2,090,331,658 Effective search space: 75251939688 Effective search space used: 75251939688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 125 (52.8 bits)