BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0067.p (395 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K4J3.1 B3K4J3_9BACI Copper amine oxidase domain protein 114 2e-23 B1I3U1.1 B1I3U1_DESAP Copper amine oxidase domain protein 99 9e-19 B3KA42.1 B3KA42_9BACI Copper amine oxidase domain protein 97 2e-18 A3DCG1.1 A3DCG1_CLOTH Copper amine oxidase-like protein 91 1e-16 Q0B0M3.1 Q0B0M3_SYNWW N-acetylmuramoyl-L-alanine amidase EC=3.5.... 89 5e-16 >B3K4J3.1 B3K4J3_9BACI Copper amine oxidase domain protein Length = 386 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 97/374 (25%), Positives = 175/374 (46%), Gaps = 32/374 (8%) Query: 28 ITVTVDQQKLNLSSSAPVKDQGSILVPMRPIFEKLGLTLVWNSKTGTITASKEGLTITLQ 87 I V +D Q++ ++ AP+ G V RP+F+ L + WN +T + + + Sbjct: 31 IRVYLDNQEIQFAA-APIMKNGVTFVQFRPLFQALDYKVHWNGANKQVTGTYLDQKLQMT 89 Query: 88 LGSKKATVNGTVKQLATAPKMVNNVTYVPLRFVGEATGKSVVWNAKANSVEI--KSSLNS 145 +G K A VNG L AP T VPLRFV EATG V W++KA +V+I + + Sbjct: 90 IGQKTAYVNGAKTTLQIAPFTQGGNTLVPLRFVAEATGLPVKWDSKARTVKIDREGATAK 149 Query: 146 ADDKGISKLFDQYVSYSNKEDYEGFISLIDPKSP-LAAAATAFKEQMAAYDVTTTISRMD 204 A+D+ + KL+ + + + +S+ P+SP LA +++Q D Sbjct: 150 AEDE-VKKLYHIIEEAGSAKKLDEVMSVFHPESPVLAEVKQNYQDQFK----NDKHVSAD 204 Query: 205 IIDIKEKEATVDVVETT--ERTGGAFIPNSTAEYIYSLTKNDSGSSWLISNVQIQAVQYS 262 + D+ ++ + +R GG F + T Y +L K D+ +W I ++ + +Y Sbjct: 205 VWDVAVAGTSIHAYTSVSLDRIGGPFAWDVTLHY-ENLLKKDASGAWKIYDLNLYETEYF 263 Query: 263 LPAGALEAKITVPAADEEQIKAVLQA-NTDYT--NKEDLTGVLSTIDESSPAYKLSGQTY 319 L LEA+ VP E ++KA+L++ + Y N+E+ ++S I S +++ + Sbjct: 264 LGDKLLEARPVVP---EAELKAILESIDIQYKGFNEENGPLLMSVIHPDSVFHEMFQTSI 320 Query: 320 KQ-LFNSYDLESKLESSKVIYYNDNEAAIYAVMTTKKLKGPQFTDNRGETVTTVK----K 374 ++ +F+ + K E + +++ +A +YA + D GET+ + K Sbjct: 321 EEGIFDEVNFNLKSEELRTVFFQGEDAVVYA---------EESDDADGETIYSTSLYWLK 371 Query: 375 SADGKWKLVQTYSL 388 +GKW + L Sbjct: 372 KTEGKWLIYDVLEL 385 >B1I3U1.1 B1I3U1_DESAP Copper amine oxidase domain protein Length = 478 Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 54/122 (44%), Positives = 72/122 (59%), Gaps = 1/122 (0%) Query: 25 EQPITVTVDQQKLNLSSSAPVKDQGSILVPMRPIFEKLGLTLVWNSKTGTITASKEGLTI 84 E IT+T+D ++L+ + PV + G LVP+R IFE LG + W+ KT T+T SK T+ Sbjct: 30 EAAITITIDGERLS-GDTPPVIEGGYTLVPLRTIFEALGAEVHWDEKTRTVTGSKGTATV 88 Query: 85 TLQLGSKKATVNGTVKQLATAPKMVNNVTYVPLRFVGEATGKSVVWNAKANSVEIKSSLN 144 L +G K A V+G L A KM+N T VPLRF+GEA G V WN V I++ Sbjct: 89 KLVIGEKTAYVSGKPVTLDVAGKMINGRTMVPLRFIGEALGAKVDWNGAQRMVVIRTDRG 148 Query: 145 SA 146 SA Sbjct: 149 SA 150 >B3KA42.1 B3KA42_9BACI Copper amine oxidase domain protein Length = 493 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 51/115 (44%), Positives = 70/115 (60%), Gaps = 1/115 (0%) Query: 25 EQPITVTVDQQKLNLSSSAPVKDQGSILVPMRPIFEKLGLTLVWNSKTGTITASKEGLTI 84 E PI + ++ Q L + +PV GS+LVPMRPIFE L ++ W+ KT ++++SK I Sbjct: 377 EAPIRIKINGQ-LQSYAQSPVMVGGSVLVPMRPIFESLDASVKWDQKTQSVSSSKGSTQI 435 Query: 85 TLQLGSKKATVNGTVKQLATAPKMVNNVTYVPLRFVGEATGKSVVWNAKANSVEI 139 L++GSK+A VNG L +AP+MV T VPLRFV A G V W+ V I Sbjct: 436 KLKMGSKQAVVNGKTVTLDSAPRMVKGTTMVPLRFVASALGCEVKWDGNEKMVLI 490 >A3DCG1.1 A3DCG1_CLOTH Copper amine oxidase-like protein Length = 732 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/98 (47%), Positives = 59/98 (60%) Query: 43 APVKDQGSILVPMRPIFEKLGLTLVWNSKTGTITASKEGLTITLQLGSKKATVNGTVKQL 102 AP G LVP R IFE+LG T+ WN T T+TA +G I L +G+ KA VNG L Sbjct: 72 APFISNGRTLVPFRAIFEELGYTVDWNDATKTVTAKYKGNEIKLTVGANKAVVNGYEVPL 131 Query: 103 ATAPKMVNNVTYVPLRFVGEATGKSVVWNAKANSVEIK 140 AP +VN+ T VPLRFV E +G V WN + ++ IK Sbjct: 132 DVAPAIVNSRTVVPLRFVAENSGSFVDWNPEDKTISIK 169 >Q0B0M3.1 Q0B0M3_SYNWW N-acetylmuramoyl-L-alanine amidase EC=3.5.1.28 Length = 907 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 48/112 (42%), Positives = 66/112 (58%), Gaps = 1/112 (0%) Query: 30 VTVDQQKLNLSSSAPVKDQGSILVPMRPIFEKLGLTLVWNSKTGTITASKEGLTITLQLG 89 V +D Q L+ P+ + LVP+R IFE LG T+ W++ T T+T+ K T+ L +G Sbjct: 284 VFLDGQALSFEV-PPIIENDRTLVPLRAIFEALGATVDWDNATRTVTSRKGSTTVVLAIG 342 Query: 90 SKKATVNGTVKQLATAPKMVNNVTYVPLRFVGEATGKSVVWNAKANSVEIKS 141 S TVNG V+QL K+V + T PLRFVGEA G +V W ++ IKS Sbjct: 343 SLAPTVNGQVRQLDVPAKIVADRTLAPLRFVGEAFGSTVDWEGSTRTINIKS 394 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.309 0.126 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,062,124,377 Number of extensions: 79678339 Number of successful extensions: 207749 Number of sequences better than 1.0e-05: 182 Number of HSP's gapped: 207614 Number of HSP's successfully gapped: 183 Length of query: 395 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 257 Effective length of database: 1,760,596,133 Effective search space: 452473206181 Effective search space used: 452473206181 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 132 (55.5 bits)