BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0307.0066.p
         (360 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KAS1.1 B3KAS1_9BACI Putative uncharacterized protein                211   1e-52
B1DJH2.1 B1DJH2_9BACL Putative uncharacterized protein                 62   1e-07

>B3KAS1.1 B3KAS1_9BACI Putative uncharacterized protein
          Length = 385

 Score =  211 bits (536), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 129/352 (36%), Positives = 189/352 (53%), Gaps = 17/352 (4%)

Query: 2   LRVSAFSMLDAFMEFMQGEEVPDAVVGDPSFIEAWLVEGRNSVPWAVLSDDGDIRGNPSG 61
           L+V+AF+ +++F+ +M   + P+ VVGD + +E+WL  G  SVPW +LS+     G+ + 
Sbjct: 33  LQVTAFTRVESFLHYMDAGDTPNLVVGDANMLESWLSRGEASVPWLLLSE-----GHSAL 87

Query: 62  SLA-GGQMIIKYQALPSLLESILQLCDLKRSRMASVPKEETXXXXXXXXXXXXXKTTLAL 120
           SL  G     KYQ LP LL+ ++  C      +  +    T             K+T+A+
Sbjct: 88  SLMEGCDSTPKYQPLPQLLDIMITRCRGSGGTLDKLNSGSTPVLGIVSSLGGSGKSTIAM 147

Query: 121 NMAKQLGGLGLSVFYLNLESVDSSGLFLRLPDGSAPGLE----RLLYELKASAGEGGLAQ 176
           NMAKQLG LGL VFYLNLESV+SS LF   P GS  G+E    RLLY++KAS      A 
Sbjct: 148 NMAKQLGVLGLRVFYLNLESVNSSALF---PSGSV-GMEGSFSRLLYDVKASQES---AS 200

Query: 177 SGKMELEQYVIRHESLRSEAFRPVDNLKEKXXXXXXXXXXXXXXXSGAGRYDVVIVDTGG 236
             ++ +  Y+IRH  L+ ++F P  N+KE                     YD ++VDT G
Sbjct: 201 ETELSIAPYIIRHHGLKCDSFEPSFNVKEISEMTVDDTSLLLTSLIACHHYDAIVVDTEG 260

Query: 237 IEEQQTQAVLHRCGLLLWVLTGDKNSMHKTGRWLEHCSKPHSGRLQEVQGKSRFVLNFAA 296
              ++ QAVL + GLL+WVL  D  SMHK+G WL+            V+ +SRF++N   
Sbjct: 261 DSGERLQAVLEQAGLLIWVLLDDLISMHKSGVWLDQLELKSPALFGSVRKRSRFIVNRYT 320

Query: 297 DANSGGVLPEGVEMDAVLPYISSWAVQHHGELCLNSPQFIFGIQQLCSGIIE 348
                G+  + + +D VLPYI SW   H  +L L+SP +   + +LC  ++E
Sbjct: 321 GQLVNGLPRKDMSIDGVLPYIPSWKQLHREDLLLSSPIYQREVLKLCQQLLE 372


>B1DJH2.1 B1DJH2_9BACL Putative uncharacterized protein
          Length = 370

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/298 (21%), Positives = 126/298 (42%), Gaps = 24/298 (8%)

Query: 1   MLRVSAFSMLDAFMEFMQGEEVPDAVVGDPSFIEA---WLVEGRNSVPWAVLSDDGDIRG 57
           + +++AF+  +AF++F++       +   P  +EA    L EG   VP A L        
Sbjct: 30  LWQLTAFTHAEAFVQFLKSGYPVHGIAAQPCMLEAAAGILPEG---VPVAALV------- 79

Query: 58  NPSGSLAGGQMIIKYQALPSLLESILQLCDLKRSRMASVPKEETXXXXXXXXXXXXXKTT 117
              G     Q +++YQALP LL+ +  L  +      +  ++               KTT
Sbjct: 80  AAPGQFPLYQELLQYQALPGLLQRMASL--MAPVSQGAAREQSAQVIAVYSASGGVGKTT 137

Query: 118 LALNMAKQLGGLGLSVFYLNLESVDSSGLFLR--LPDGSAPGLERLLYELKASAGEGGLA 175
           LA  +       G  +FYLNLE  ++   +L   +  G   GL +LLY L++  G+ G  
Sbjct: 138 LARQLVHTAASSGQRIFYLNLERWNAVDTWLEAGVVHGDE-GLSQLLYMLQSHPGKAG-- 194

Query: 176 QSGKMELEQYVIRHESLRSEAFRPVDNLKEKXXXXXXXXXXXXXXXSGAGRYDVVIVDTG 235
                 L ++  R   LR++   P  N +++               +  G+YD++++D  
Sbjct: 195 ----EWLGRHSKRDPYLRADYILPCSNPEDRLTLQASDANAIVRTIAATGQYDLIVIDLD 250

Query: 236 GIEEQQTQAVLHRCGLLLWVLTGDKNSMHKTGRWLEHCSKPHSGRLQEVQGKSRFVLN 293
              ++    +L     ++W++T D     K+    ++  +    R + ++ + + V+N
Sbjct: 251 DGLDELHLTLLELSHEVIWLVTEDAAVQRKSQLAYQYGVQRFGERFRLLEPRLQLVVN 308


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 2,074,163,031
Number of extensions: 83546531
Number of successful extensions: 156993
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 156989
Number of HSP's successfully gapped: 2
Length of query: 360
Length of database: 3,060,696,203
Length adjustment: 137
Effective length of query: 223
Effective length of database: 1,770,017,148
Effective search space: 394713824004
Effective search space used: 394713824004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)