BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0307.0061.p
         (189 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KAS6.1 B3KAS6_9BACI TadE family protein                             172   1e-41
A9U6N6.1 A9U6N6_PHYPA Predicted protein                               148   3e-34
B1DJH7.1 B1DJH7_9BACL Putative uncharacterized protein                108   2e-22

>B3KAS6.1 B3KAS6_9BACI TadE family protein
          Length = 224

 Score =  172 bits (436), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/190 (45%), Positives = 123/190 (64%), Gaps = 3/190 (1%)

Query: 1   MLLLFFCLYSYQKSMLLQIASATTERAAYNWDNTHK-ETKGAYPIGEYDPLYWRIGDDAL 59
           +LLLF CLY YQ+SML+Q ++A +ER AY+WDN+HK  T G+   G +D LYWR+ DD +
Sbjct: 32  VLLLFLCLYIYQQSMLVQASAAASERTAYSWDNSHKIATSGSVEQGRHDALYWRLTDDNV 91

Query: 60  LSSLFGIGSPDGRPAITLPAAG-DGGTLPVVKLEHASGMVPANMPGEMRYAYSPAGRQIS 118
           + +LFG+   D   +I LP    +GG LP +K+      VP++M GEMRY      R+++
Sbjct: 92  VGTLFGLEGGDSTMSIALPQGEVEGGKLPELKMSKGGTAVPSSMAGEMRYTNQLLVRKVT 151

Query: 119 AELKRMLNLPVLDGILSDKAMPVVQARSVVAEPVEFIRTVDLMRYYGAKFKGGPDSGMDK 178
             L   ++L  +  +L D     V ++S+V +PVEFIRTVDLMRYYG+KF+GG + G DK
Sbjct: 152 TSLNEQVSLTPISRMLDDGGQIKVNSQSIVVDPVEFIRTVDLMRYYGSKFQGGRN-GTDK 210

Query: 179 KNAEIMLKKL 188
             A  +L+K 
Sbjct: 211 AAAGEVLQKF 220


>A9U6N6.1 A9U6N6_PHYPA Predicted protein
          Length = 713

 Score =  148 bits (373), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 75/171 (43%), Positives = 106/171 (61%), Gaps = 2/171 (1%)

Query: 1   MLLLFFCLYSYQKSMLLQIASATTERAAYNWDNTHKET-KGAYPIGEYDPLYWRIGDDAL 59
           M+LLF  LY YQ+SML Q ASA  ER AY+WDN+HKE   G+ P+ +YD LYWR+ DD  
Sbjct: 9   MILLFLSLYMYQQSMLHQAASAAAERTAYSWDNSHKEALDGSVPVDQYDSLYWRMTDDQW 68

Query: 60  LSSLFGIGSPDGRPAITLPA-AGDGGTLPVVKLEHASGMVPANMPGEMRYAYSPAGRQIS 118
           L +LFG    +    + +P+ +   G L  +KL      +PA M G+M Y  +   R+++
Sbjct: 69  LGALFGWAGAENSQTVPVPSTSSTQGALTAIKLSKTGSAIPAGMQGDMTYKNALLQRKVT 128

Query: 119 AELKRMLNLPVLDGILSDKAMPVVQARSVVAEPVEFIRTVDLMRYYGAKFK 169
           A L +M++L  LD +L   +       S+V +PVEFIR++ LMRYYG+KFK
Sbjct: 129 ASLNQMISLRPLDAMLDGGSELRTSGSSLVVDPVEFIRSIHLMRYYGSKFK 179


>B1DJH7.1 B1DJH7_9BACL Putative uncharacterized protein
          Length = 241

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 8/172 (4%)

Query: 7   CLYSYQKSMLLQIASATTERAAYNWDNTHKETK-GAYPIGEYDPLYWRIGDDALLSSLFG 65
            +Y YQK +L   AS T ERA+++WDN+H+  + G    G+YD LYWR+  D +L SLFG
Sbjct: 49  SMYIYQKVVLYYSASETAERASFSWDNSHRNARNGMLTTGQYDGLYWRVSGDYMLGSLFG 108

Query: 66  IGSPDGRPAITLPAAGDGGTLPV--VKLEHASGMVP--ANMP--GEMRYAYSPAGRQISA 119
           I +      + LP A +   L +   KL  AS  +   A +P  G++ YA S   R+++ 
Sbjct: 109 ITADQTDVTLELPGARNTDNLELAETKLHQASAWLTGDAELPFQGDIAYANSLLKREVAV 168

Query: 120 ELKRMLNLPVLDGILSDKAMPVVQARSVVAEPVEFIRTVDLMRYYGAKFKGG 171
           +L + ++L  L+  L       V A S+V +PV+FIR VD +RYY AKF  G
Sbjct: 169 KLMQPVSLAPLELTLGLSEPKTVAAASIV-DPVQFIRDVDTVRYYTAKFSNG 219


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,182,059,819
Number of extensions: 52132775
Number of successful extensions: 114396
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 114390
Number of HSP's successfully gapped: 3
Length of query: 189
Length of database: 3,060,696,203
Length adjustment: 128
Effective length of query: 61
Effective length of database: 1,854,806,283
Effective search space: 113143183263
Effective search space used: 113143183263
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)