BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0060.p (720 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAS7.1 B3KAS7_9BACI Putative uncharacterized protein 557 e-156 A9U6N6.1 A9U6N6_PHYPA Predicted protein 335 9e-90 B1DJH8.1 B1DJH8_9BACL Putative uncharacterized protein 328 1e-87 >B3KAS7.1 B3KAS7_9BACI Putative uncharacterized protein Length = 728 Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust. Identities = 312/727 (42%), Positives = 428/727 (58%), Gaps = 20/727 (2%) Query: 1 MVLAFVFLFTAVLIDYARIAAVNVQEERLARAAVRSVMSAYDLELKDKYGLFAYGGNDGD 60 + LA VF+F A+ ID++RIAA+ VQ ERL RAAVRSVMS+YD +L+ +YGL+A+GG GD Sbjct: 15 IALAAVFMFVAIFIDFSRIAAMKVQSERLTRAAVRSVMSSYDPQLQKEYGLYAHGGTSGD 74 Query: 61 QLLASVLNDNLYESGRGDAFNXXXXXXXXXXXXXXXXXGNYDIFRRQIVEEMKYKAPVDF 120 ++ +VLND+L R DAF G YDIF RQI+E+MKYKAP+DF Sbjct: 75 LIMGNVLNDSLNPGDRSDAFRLMAMELDSSGLEFQRPLGTYDIFNRQIIEDMKYKAPIDF 134 Query: 121 ALELAGKFKPLSAAMGEASRTTKVLGKLQPLYDEREEALDQMLKSRKQAAESGKALQALI 180 LEL GKFKPLS +M EAS T VL KL+ LYD+REEALD+ML +++A E L L+ Sbjct: 135 TLELVGKFKPLSQSMKEASNTVDVLKKLRKLYDKREEALDEMLAKQRKAGEHAIRLSKLV 194 Query: 181 MNPPGDTIVFTAIG-SITAAADIPAMYGDYVGKYHADMQRRAEGRTAWYESLLKSYLQES 239 M+PPG I T++G SI AA+ + Y DY K D R + Y LL +Y Sbjct: 195 MDPPGQPINDTSLGGSIQTAAEGASQYEDYKDKQQEDADRPP--KEKQYTLLLMAYRSGM 252 Query: 240 AELLEQVSGSQAAYQEEQQRYMEEAAAALERVKSLNVQMKSLLEQSRNSGPEDAQDPARS 299 + + Q+S +Q E + + +A E +SLN +MK ++++S N D + Sbjct: 253 SSIGSQISREAERFQRENDKLLADAQQLWEEARSLNEEMKQVIKESENRSSNAGYDQVTN 312 Query: 300 WDIPGGTAELS---ADPIHKLREQEDSLILAASDISTLENXXXXXXXXXXXXXXXXXXXP 356 D+ G+A+ S A+ I +R+Q D LI ++ Sbjct: 313 -DVTPGSADSSGSEAEMIQSIRKQADKLIHGDDFLNGFRQEIDNQERRYQQVVRAVAALQ 371 Query: 357 GSLSPATGLNADVSAMMASVLGASQTIDSYMRNYGNDGVLIAADRTR--IETHRTFDSQR 414 SL M +V+ AS+ + +Y+ NYG G DR + +E RT D +R Sbjct: 372 SSLGG--------EGMKGAVIEASRELQNYISNYGVSGSGNIMDRQQAALEQFRTSDKER 423 Query: 415 KQTEQEAKGKLGDAMKLLDQIRGLGAGAGEAMERYQTLRNYYNGNIAFNKGLDQEPETGA 474 K E+ A KL A K ++ I GL M+ ++ L+ YY+ ++ FN D + Sbjct: 424 KAMEKLANQKLKQASKAIEAINGLNGQNQAIMDEFRELQQYYDESLQFNAEADSMSKGKP 483 Query: 475 ADQNLYSAGSSSMVKVDGLYAAMGNVLEGARDRLFQTEYSALYFPPFDISQLSGLASGSI 534 D + Y AG +M +DG++ MGNVL G RD LFQ EY+ Y+ FD+ LSG+ GS Sbjct: 484 LDDDPYDAGKQAMDNMDGMFGFMGNVLGGVRDELFQNEYAVHYYQHFDVGNLSGIVDGS- 542 Query: 535 NDAAEKLADQLDPTAQELEYVLYGFYNPAGNIAAAYGEIFAVRLAIRTMEGFTERANLGN 594 E++ + QE+EY+LYGF+NPAGNI+AAY EIFA RLAIRTMEGF + LGN Sbjct: 543 -STGEEIVREFAIGNQEVEYILYGFHNPAGNISAAYAEIFASRLAIRTMEGFVVNSKLGN 601 Query: 595 PLLVLASALLYGVEQAVQDMLLLCKNGEIPLSKYISAKLSYRDYLRLFLVLHGGGDVQLS 654 PL VLA+A+LYG+E+A++DM+ LC+ G + LSKY+ +L+YRD+LR+FL +H + +LS Sbjct: 602 PLAVLAAAILYGIEKAIEDMIQLCQKGSVQLSKYVPVELTYRDHLRIFLFIHSNNEKKLS 661 Query: 655 RMLALIRLNTGSNPDEIFTYAAADIKMAMPLWFLPGVVKLLDYGGGLSGD-VQGKLYYRT 713 RMLALIRLNTG NP E FTYA+ +++ AM LWFLPGV K + G GD VQG Y Sbjct: 662 RMLALIRLNTGINPAERFTYASGEVRTAMRLWFLPGVTKSIGVAFGSDGDEVQGSRYLVK 721 Query: 714 VQADFSY 720 +ADFSY Sbjct: 722 RKADFSY 728 >A9U6N6.1 A9U6N6_PHYPA Predicted protein Length = 713 Score = 335 bits (859), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 190/507 (37%), Positives = 292/507 (57%), Gaps = 6/507 (1%) Query: 220 RAEGRTAWYESLLKSYLQESAELLEQVSGSQAAYQEEQQRYMEEAAAALERVKSLNVQMK 279 R E Y ++ Y + S +++ ++ Q++ + + ++ A E +S N +MK Sbjct: 207 RGEDEEEQYSPEIREYNRSSGKVISRLQDIQSSAAKSHAKELQNALEYWEEARSSNDKMK 266 Query: 280 SLLEQSRNSGPEDAQDPARSWDIPGGTAELS-ADP--IHKLREQEDSLILAASDISTLEN 336 ++ ++ N G + D S IPG E S +DP IH +R+ D L+L+ S L + Sbjct: 267 EVIAEAGNRGGTEGYDQVGSAIIPGAAPEASGSDPAAIHGIRDGIDQLLLSDSLFQELND 326 Query: 337 XXXXXXXXXXXXXXXXXXXPGSLSPATGLNADVSAMMASVLGASQTIDSYMRNYGNDGVL 396 L+ ++G+ M V+ D Y+ +Y G Sbjct: 327 VIKTQKQDYSAFNNQLSTLLSLLAESSGVQGSSGRMKNEVIRGVSAADRYVHDYAVSGSG 386 Query: 397 IAADRT--RIETHRTFDSQRKQTEQEAKGKLGDAMKLLDQIRGLGAGAGEAMERYQTLRN 454 DR +++ HR D +RK+ E+++K KL +A +L+ I L + E YQ L+ Sbjct: 387 NKLDRVAGQLQEHRGSDKERKEKEKQSKAKLSEAAGILESINKLDQKVKQHNEEYQELQQ 446 Query: 455 YYNGNIAFNK-GLDQEPETGAADQNLYSAGSSSMVKVDGLYAAMGNVLEGARDRLFQTEY 513 YY+ ++ FNK E + D + Y AG S+M + D +Y +M ++ G +D LFQ EY Sbjct: 447 YYDDSLTFNKEDAGSEYKGTDLDHDPYDAGKSAMKQTDSVYGSMAGMMSGIKDELFQNEY 506 Query: 514 SALYFPPFDISQLSGLASGSINDAAEKLADQLDPTAQELEYVLYGFYNPAGNIAAAYGEI 573 +ALYF FD+ L A+ + + +AD++ + QELEY++YGF+NP GN++AAY EI Sbjct: 507 AALYFTHFDLGLLKDTAASPGSRLGDAVADEMSVSHQELEYIVYGFHNPVGNVSAAYAEI 566 Query: 574 FAVRLAIRTMEGFTERANLGNPLLVLASALLYGVEQAVQDMLLLCKNGEIPLSKYISAKL 633 FA RLA+RTMEG + + LGNPLLVLA+ALLYGVE A+ DM+ LC+ G + LS Y+ ++ Sbjct: 567 FAARLAVRTMEGLVKNSKLGNPLLVLAAALLYGVEMAMADMVKLCREGSVELSSYVKIQM 626 Query: 634 SYRDYLRLFLVLHGGGDVQLSRMLALIRLNTGSNPDEIFTYAAADIKMAMPLWFLPGVVK 693 +YRDYLRLFL++H + ++SRMLALIRLNTG NP E TYA+ ++++ M LWFLPGV++ Sbjct: 627 TYRDYLRLFLLIHSDNEKKMSRMLALIRLNTGINPAERATYASGEVRIGMRLWFLPGVIQ 686 Query: 694 LLDYGGGLSGDVQGKLYYRTVQADFSY 720 + Y GG +V+G YY T +ADF+Y Sbjct: 687 MAGYAGGSPDNVEGNRYYVTKKADFAY 713 >B1DJH8.1 B1DJH8_9BACL Putative uncharacterized protein Length = 738 Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 231/740 (31%), Positives = 370/740 (50%), Gaps = 49/740 (6%) Query: 1 MVLAFVFLFTAVLIDYARIAAVNVQEERLARAAVRSVMSAYDLELKDKYGLFAYGGNDGD 60 +VL+ + LF+AVLIDYAR+A ++ E AR+ VRS +SAYD L ++YGLF GG D + Sbjct: 17 VVLSGLLLFSAVLIDYARMAVLHKVTEDAARSGVRSALSAYDNRLYERYGLFGRGGTDSN 76 Query: 61 QLLASVLNDNLYES-GRGDAFNXXXXXXXXXXXXXXXXXGNYDIFRRQIVEEMKYKAPVD 119 + + NL S G+ + F G +++F RQ++EEMKYKAPVD Sbjct: 77 DIFEQTVQANLERSAGQQETFKLVQAELQSAHIDNAEVLGKHEVFSRQVLEEMKYKAPVD 136 Query: 120 FALELAGKFKPLSAAMGEASRTTKVLGKLQPLYDEREEALDQMLKSRKQAAESGKALQAL 179 F LELA KF PLS AM EA+ T +L +L+ LYD+REE L L+ ++QAAE+ + L Sbjct: 137 FTLELASKFAPLSGAMKEANVTVNMLEELRKLYDKREEKLAAALQLQRQAAETVGGIAGL 196 Query: 180 IMNPPGDTIVFTAIGSITAAADIPAMYGDYVGKYHADMQRRAEGRTAWYESLLKSYLQES 239 I P + A G+ AA + Y Y D + +G+ Y +++Y ++ Sbjct: 197 I---PAKALEL-ATGT-ENAARLAGDYAQYANWVTTDQRLVQQGKKTKYSDQIRAYEDKA 251 Query: 240 AELLEQVSGSQAAYQEEQQRYMEEAAAALERVKSLNVQMKSLLEQSRNSGPEDAQDPARS 299 + +S A +++ + +EA A+ K LN M+ + +++ N+ D Sbjct: 252 RGWTDGMSRELAKARKQHDKLQQEAVKAINEAKQLNADMQRIKQETANAPSNSGYDRVTG 311 Query: 300 WDIPGGTAELSADPI---------HKLREQEDSLILAASDISTLENXXXXXXXXXXXXXX 350 +I G A +A P+ ++R+ D LIL + Sbjct: 312 KNIAGVDA--AAGPVVDTAPENDMQEIRKMADELILPDGWFAEYSGEIADQAAVFASLQM 369 Query: 351 XXXXXPGSLSPATGLNADVSAMMASVLGASQTI-----------DSYMRNYGNDGVLIAA 399 A G A+++A +AS +++ I + Y Y G + Sbjct: 370 ----------EAGGFIANLTAGLASPNLSNEQIKEGAVNLRIAYEQYEAAYVRKGSSLD- 418 Query: 400 DRTRIETHRTFDSQRKQTEQEAKGKLGDAMKLLDQIRGLGAGAGEAMERYQTLRNYYNGN 459 +R ++ T + +R+ E +A +A +LL + + + E + Q + Y N Sbjct: 419 EREQMLTDKELKKERQAQEAKAGELWSEARRLLHGMTSV-PQSEEHLRIIQDIEKRYKDN 477 Query: 460 IAFNKGLDQEPETGAA-DQNLYSAGSSSMVKVDGLYAAMGNVLEGARDRLFQTEYSALYF 518 + FN+ G ++ + + + GL+ + ++LE RD ++ +EY+ +F Sbjct: 478 LLFNQEASGAEAGGLVFAEDAHEEAEQATSAMSGLFDGIADMLEQTRDSVYLSEYTVSHF 537 Query: 519 PPFDISQLSGL-ASGSINDAAEKLADQLDPTAQELEYVLYGFYNPAGNIAAAYGEIFAVR 577 F L L SG N+ A A + QE EYV+YGF++P N+AAAYGE+ VR Sbjct: 538 ASFAPQNLRALLTSGDTNELAHAAA----FSNQEAEYVIYGFHSPTANLAAAYGELIGVR 593 Query: 578 LAIRTMEGFTERANLGNPLLVLASALLYGVEQAVQDMLLLCKNGEIPLSKYISAKLSYRD 637 +A+RTMEG + +PLL+L+ +++YG+E+ ++DM + G PLSKYI ++Y D Sbjct: 594 MAVRTMEGLSACRTAAHPLLILSCSVVYGLEKTMEDMAAFTERGAAPLSKYIKVDVAYTD 653 Query: 638 YLRLFLVLHGGGD--VQLSRMLALIRLNTGSNPDEIFTYAAADIKMAMPLWFLPGVVKLL 695 YLRLF+++HGG + L+RM+A+I N G ++ T +IK + LWFLPGV+ ++ Sbjct: 654 YLRLFMLVHGGANRPSALARMIAVIEYNGGVTLSKVPTALTGEIKASAKLWFLPGVMDIV 713 Query: 696 DYGGGLSGDVQGKLYYRTVQ 715 G L G V G Y TVQ Sbjct: 714 QRFGSLQGKVVGG-KYETVQ 732 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,867,083,023 Number of extensions: 154003717 Number of successful extensions: 497494 Number of sequences better than 1.0e-05: 4 Number of HSP's gapped: 497483 Number of HSP's successfully gapped: 6 Length of query: 720 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 577 Effective length of database: 1,713,491,058 Effective search space: 988684340466 Effective search space used: 988684340466 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)