BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0307.0059.p
         (317 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KAS8.1 B3KAS8_9BACI Putative uncharacterized protein                313   1e-83
B1DJH9.1 B1DJH9_9BACL Putative uncharacterized protein                135   4e-30

>B3KAS8.1 B3KAS8_9BACI Putative uncharacterized protein
          Length = 307

 Score =  313 bits (802), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 152/296 (51%), Positives = 194/296 (65%), Gaps = 15/296 (5%)

Query: 14  QMSLYSTALQSTASDTVKVISAHMYPAALAVQKREAGKEGNXXXXXXXXXXXXXXXXXXX 73
           QM+L STALQST SDTVK ++AHMYP +LAVQ   AG  G                    
Sbjct: 24  QMTLISTALQSTVSDTVKTVAAHMYPVSLAVQAN-AGGNGTSEGTPST------------ 70

Query: 74  XXDKWSIPRLSLEEWSDSYVADLPEPVAGWVRSAVKRGEDPLQKLQAEASEGALDLALKP 133
               W IP+LSL +W   Y   LP P   W+  AV  GE+PLQ+L+ +  E  LD  +KP
Sbjct: 71  --SHWEIPKLSLSDWVSKYSDSLPSPAKEWITEAVTTGEEPLQQLKNQTVEAVLDPVVKP 128

Query: 134 VMKPYLSTDWLEYDRIHVSNVIVPDLKTGSRPYFGLVVSYELPMKVPFLNQRIVLEASAV 193
           +MKP++    L+YDRIHVSNV +P+LK G+ PYFG+ V+Y LP++VPFLN+RIVL+A A 
Sbjct: 129 MMKPFMPDRLLDYDRIHVSNVHIPNLKIGTSPYFGIEVNYALPIRVPFLNKRIVLQAKAK 188

Query: 194 ERLWIGNTDAXXXXXXXXXXXXQNSIVILEKPSPGVANHQGRIRVKIPPNASASLSIFYK 253
           ERLWIG+T                +I +LEKP+P VA+ Q +++VK+ P ASA LS++YK
Sbjct: 189 ERLWIGDTGEGGDDSGNGDGSENGAIELLEKPNPAVASKQAKVKVKVEPGASAQLSVYYK 248

Query: 254 SGQSTAKYLGWKQADENGYLDWEWKIGVNTTPGTWRFVIQLQDGTSLEAAFTVVKK 309
           SGQSTAKYLGWK AD NGY+DWEW +G NTTPGTW FV++  DG  +E  FTVV +
Sbjct: 249 SGQSTAKYLGWKTADSNGYIDWEWNVGFNTTPGTWLFVVETADGQRIEVPFTVVAR 304


>B1DJH9.1 B1DJH9_9BACL Putative uncharacterized protein
          Length = 323

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 141/305 (46%), Gaps = 43/305 (14%)

Query: 14  QMSLYSTALQSTASDTVKVISAHMYPAALAVQKREAGKEGNXXXXXXXXXXXXXXXXXXX 73
           ++     ALQS AS TV+ I+ H+ PA L  QK  +                        
Sbjct: 48  RLCAVQMALQSAASQTVRQIATHIRPADLTFQKASS------------------------ 83

Query: 74  XXDKWSIPRLS-----LEEWSDSYVAD----LPEPVAGWVRSAVKRGEDPLQKLQAEASE 124
                SIP L      L +W  +   +    LP P A  + SAV  G    Q +   A+ 
Sbjct: 84  -----SIPNLGFSGLPLPDWGGTIAKEAAGWLPAP-ADALASAVLEGN--WQPVTDAAAT 135

Query: 125 GALDLALKPVMKPYLSTDWLEYDRIHVSNVIVPDLKTGSRPYFGLVVSYELPMKVPFLNQ 184
                A++P+++ +     LE +R+ +S++ +P+LK    PY  +   YE P+ +PFLN+
Sbjct: 136 EVGRTAVEPLLRQFADEAVLEKERLSLSHLSLPELKEKQEPYLTIEAEYEFPLSLPFLNR 195

Query: 185 RIVLEASAVERLWIGNTDAXXXXXXXXXXXXQNSIVILEKPSPGVANHQGRIRVKIPPNA 244
           +IV+   A ER+W+  +DA                ++  +P P    ++  +     P A
Sbjct: 196 KIVMREQASERVWV--SDALPAKEDTAAADVTPIQIVSIQPVPLRPGNRATVIALTSPGA 253

Query: 245 SASLSIFYKSGQSTAKYLGWKQADENGYLDWEWKIGVNTTPGTWRFVIQLQDGTSLEAAF 304
           SASL++ YKSG STAK+LG   AD NGY+ W W +  NTTPGTW        G ++   F
Sbjct: 254 SASLTVNYKSGTSTAKHLGSATADANGYVQWTWLVSGNTTPGTWELTATSASGETVSMHF 313

Query: 305 TVVKK 309
            V KK
Sbjct: 314 NVTKK 318


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.130    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,630,738,270
Number of extensions: 59154816
Number of successful extensions: 86453
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 86451
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 3,060,696,203
Length adjustment: 135
Effective length of query: 182
Effective length of database: 1,788,859,178
Effective search space: 325572370396
Effective search space used: 325572370396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)