BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0057.p (550 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAT0.1 B3KAT0_9BACI Forkhead-associated protein 224 2e-56 B1DJI1.1 B1DJI1_9BACL FHA domain containing protein 97 4e-18 B4BEK9.1 B4BEK9_CLOTM FHA domain containing protein 73 7e-11 A3DF37.1 A3DF37_CLOTH FHA domain containing protein 73 8e-11 Q97LZ4.1 Q97LZ4_CLOAB Predicted membrane protein, containing FHA... 67 4e-09 >B3KAT0.1 B3KAT0_9BACI Forkhead-associated protein Length = 617 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 139/387 (35%), Positives = 205/387 (52%), Gaps = 50/387 (12%) Query: 1 LFGLSRDFVQRDGISMLLSRPGGLKPDELNMVQARMLMNIGIPHHLRLQLKEINLQVTLD 60 +FGL DF+Q G M+L R G++ ELN VQ M+ + IPH L+L +KE++ +VTL+ Sbjct: 1 MFGLKADFMQNGGTIMVLDRNEGIQSAELNHVQLGMIRSSRIPHFLKLHMKEVDYKVTLE 60 Query: 61 YALSRRKMLSHLLKGDKLGMPDFFGLLLQIAVGMEEGRLYMLSAEQYVLHEDYIFIDGPL 120 Y ++ +KMLS LK +++ + +++GLLLQIA +E+ RLYML E Y+LHED++F++G L Sbjct: 61 YDITGKKMLSQALKSERMTLTEYYGLLLQIATALEDSRLYMLQPENYILHEDFLFVEGSL 120 Query: 121 RSGKVYLTYLPLQA-EFSVNA-GEGLKSLIMALMASVKELSGDGVQRLLQYCGEEEFTPA 178 G +YLTY+PL E S N LK L+ L+ SV EL G G+Q L+ +C E+ F Sbjct: 121 HLGTLYLTYVPLAVNETSSNRLPVTLKELMTRLLLSVSELKGGGIQALMSFCSEQSFNLP 180 Query: 179 GLKELLAELLT--DGEGANRFTDTARAVPSSI---WPDTNGPAERGIRE--MTGTAPNIA 231 GLK L+ ELL DGE T AVP+ + P T+ P+ + + P + Sbjct: 181 GLKRLVIELLAGEDGESDQAGTQAKMAVPAHVNERLPYTDNPSNSSVSRPAFSFAEPTHS 240 Query: 232 -SAVPEQN----------------RTGEGFGNAGSEIQKSA----------PWMSGYXXX 264 SA P+ + RT E FG +G + ++ W SG Sbjct: 241 RSAAPQMDNDGNTDKQSLIRSLTERTNEMFGKSGQNEESNSHAGRTPSGLPAWSSG---- 296 Query: 265 XXXXXXXXXXXDDGDMESNTAPASSAYRTYTVLGGVLADAVLWKFLYLNNPKPLWMAVCA 324 DD +++ SS RTY +LG +LA A W+ LY+N P PL + + Sbjct: 297 ----------TDDSNLDEAEHGKSSPVRTYILLGCLLAAAGAWRMLYMNQPGPLMLGLSV 346 Query: 325 VATLALGVFCWLVWSGRLILGGERQEE 351 T+ L V W ++G+L L R E+ Sbjct: 347 GITILLAVIAWFGYTGKLRLLSRRAED 373 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 53/97 (54%), Positives = 72/97 (74%), Gaps = 1/97 (1%) Query: 452 YLERVHENEGGLPEKIELNRPSFLIGRSPDVAQYVEKSEGVSRVHAEILKSGGGYILKDL 511 YLE ++E +P++IEL++P F+IGRSPDVAQ+V + G SR H E+ + GGY+LKDL Sbjct: 520 YLE-LNEPNAAVPQRIELHQPHFIIGRSPDVAQFVAQGVGTSRAHVELSRESGGYVLKDL 578 Query: 512 DSRNGTLFQGKAMIPYKEYPLTEGAVFTIVKGCYTFR 548 SRNGT+ +G++M+PYKEYPLTEG F I +T R Sbjct: 579 GSRNGTMLKGESMVPYKEYPLTEGDAFIIAGWTFTLR 615 >B1DJI1.1 B1DJI1_9BACL FHA domain containing protein Length = 512 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 103/188 (54%), Gaps = 6/188 (3%) Query: 7 DFVQRDGISMLLSRPGGLKPDELNMVQARMLMNIGIPHHLRLQLKEINLQVTLDYALSRR 66 DF G M++ R G+ DEL+ ++ +ML + IPH L ++ EI+ +VT YAL+ R Sbjct: 8 DFSMNRGHEMIVDRKDGIVRDELDELELQMLQSGKIPHLLPVEWLEIDGRVTFRYALAGR 67 Query: 67 KMLSHLLKGDKLGMPDFFGLLLQIAVGMEEGRLYMLSAEQYVLHEDYIFIDGPLRSGKVY 126 KML H L+ L M F+ LLL + EE + YML E +L + Y+F+ L + Sbjct: 68 KMLLHRLQVQPLSMEQFYTLLLGVVEAFEECKHYMLRPEGCLLDDQYLFVGEHLND--IA 125 Query: 127 LTYLPLQAEFSVNAGEG---LKSLIMALMASVKELSGDGVQRLLQYCGEEEFTPAGLKEL 183 + YLPL+ + G G L SL++ A ++++ G G+QR+LQ ++ + L+ + Sbjct: 126 VAYLPLKDGLR-DGGSGAGDLLSLVVRWTAYIQDIDGAGLQRILQTLNGSKWPLSELRSV 184 Query: 184 LAELLTDG 191 L L+ D Sbjct: 185 LLGLIGDA 192 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/239 (29%), Positives = 104/239 (43%), Gaps = 29/239 (12%) Query: 307 WKFLYLNNPKPLWMAVCAVATLALGVFCWLVWSGRLILG-----GERQEEGTEDGMEVMR 361 WK++YL++ + +C TL ++VWS RL G G+ +EE + + Sbjct: 284 WKYIYLSSHSRSSLYICLGLTLMGVAALYMVWSRRLPAGLLAKEGDGEEEFIPESQPLGM 343 Query: 362 RRNHKELEWDFGRXXXXXXXXXXXXGIKVSSQQLEIPAYANAQAALTKGALQERSQLKIQ 421 ++++E I++ + E+ + A L RSQ Sbjct: 344 WPRYEDIEHKEMVEPASAIALSVKPAIRMEA---ELYPHGGNTADL-------RSQ---- 389 Query: 422 SPMPVEATALLQQDLPSENERVQRGGPTVPYLERVHENEGGLPEKIELNRPSFLIGRSPD 481 P VEAT LL + + G P L R G IE F IGR + Sbjct: 390 -PATVEATVLLAE------REMDSAGSKGPALYREWAGGGSW---IEWQDEKFTIGRLGE 439 Query: 482 VAQYVEKSEGVSRVHAEILKSGGGYILKDLDSRNGTLFQGKAMIPYKEYPLTEGAVFTI 540 Y E++ G+SR+H E+ + GG YI KDL SRNG+ G+ MIPYK YP + G V + Sbjct: 440 QVSYEEEAHGISRLHLELEREGGAYIAKDLGSRNGSALNGEVMIPYKSYPFSAGDVIQL 498 >B4BEK9.1 B4BEK9_CLOTM FHA domain containing protein Length = 520 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 8/161 (4%) Query: 31 MVQARMLMNIGIPHHLRLQLKEINLQVTLDYALSRRKMLSHLLKGDKLGMPDFFGLLLQI 90 + Q ML + + L L +++ + + Y ++ + LS LK +KL DF + I Sbjct: 34 LYQVEMLASNPNKNILPLDIRQKDAKYNFYYNITSKLALSQYLKRNKLKRNDFINIFKDI 93 Query: 91 AVGMEEGRLYMLSAEQYVLHEDYIFIDGPLRSGKVYLTYLPLQAEFSVNAGEGLKSLIMA 150 + + Y+LS ++L+EDYIFID + V L YLPL E +VN E LK+ M Sbjct: 94 TKTILSAKDYLLSDRSFILNEDYIFIDP--NTMDVSLVYLPLNIENNVN--EQLKNFTMN 149 Query: 151 LM---ASVKELSGDG-VQRLLQYCGEEEFTPAGLKELLAEL 187 + A+++E + D +QR+L + F +LL +L Sbjct: 150 FIMFSANIEENNSDNFLQRILNLLKSDTFNILEFNKLLNDL 190 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 451 PYLERVHENEGGLPEKIELNRPSFLIGRSPDVAQYVEKSEGVSRVHAEILKSGGGYILKD 510 PYL+ G+ E+I +N+PSF+IGR Y+ ++ V +VHAEI+ G Y +KD Sbjct: 424 PYLQGTV---NGVTEQIIINKPSFIIGRLKSQVDYISQNNAVGKVHAEIISRDGRYFVKD 480 Query: 511 LDSRNGTLFQGKAMIPYKEYPLTEGAVFTIVKGCYTF 547 L+S+NGT G + EY + T Y F Sbjct: 481 LNSKNGTFVNGVRIAANTEYEIKNNDKITFANSEYVF 517 >A3DF37.1 A3DF37_CLOTH FHA domain containing protein Length = 520 Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 8/161 (4%) Query: 31 MVQARMLMNIGIPHHLRLQLKEINLQVTLDYALSRRKMLSHLLKGDKLGMPDFFGLLLQI 90 + Q ML + + L L +++ + + Y ++ + LS LK +KL DF + I Sbjct: 34 LYQVEMLASNPNKNILPLDIRQKDAKYNFYYNITSKLALSQYLKRNKLKRNDFINIFKDI 93 Query: 91 AVGMEEGRLYMLSAEQYVLHEDYIFIDGPLRSGKVYLTYLPLQAEFSVNAGEGLKSLIMA 150 + + Y+LS ++L+EDYIFID + V L YLPL E +VN E LK+ M Sbjct: 94 TKTILSAKDYLLSDRSFILNEDYIFIDP--NTMDVSLVYLPLNIENNVN--EQLKNFTMN 149 Query: 151 LM---ASVKELSGDG-VQRLLQYCGEEEFTPAGLKELLAEL 187 + A+++E + D +QR+L + F +LL +L Sbjct: 150 FIMFSANIEENNSDNFLQRILNLLKSDTFNILEFNKLLNDL 190 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 3/97 (3%) Query: 451 PYLERVHENEGGLPEKIELNRPSFLIGRSPDVAQYVEKSEGVSRVHAEILKSGGGYILKD 510 PYL+ G+ E+I +N+PSF+IGR Y+ ++ V +VHAEI+ G Y +KD Sbjct: 424 PYLQGTV---NGVTEQIIINKPSFIIGRLKSQVDYISQNNAVGKVHAEIISRDGRYFVKD 480 Query: 511 LDSRNGTLFQGKAMIPYKEYPLTEGAVFTIVKGCYTF 547 L+S+NGT G + EY + T Y F Sbjct: 481 LNSKNGTFVNGVRIAANTEYEIKNNDKITFANSEYVF 517 >Q97LZ4.1 Q97LZ4_CLOAB Predicted membrane protein, containing FHA domain Length = 516 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 451 PYLERVHENEGGLPEKIELNRPSFLIGRSPDVAQYVEKSEGVSRVHAEILKSGGGYILKD 510 PYL EN+ G+ EKI +N+ F IGR YV + + ++HAEI K Y L D Sbjct: 420 PYL---LENKKGVVEKIFINKDIFKIGRLTGSVDYVSDNRAIGKMHAEIRKINSEYYLMD 476 Query: 511 LDSRNGTLFQGKAMIPYKEYPLTEGAVFTIVKGCYTFR 548 LDS+NGT + + + Y ++E + YTF+ Sbjct: 477 LDSKNGTFINDRRLESNELYKISENDILKFANSYYTFK 514 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,223,042,860 Number of extensions: 139110474 Number of successful extensions: 297030 Number of sequences better than 1.0e-05: 9 Number of HSP's gapped: 297117 Number of HSP's successfully gapped: 13 Length of query: 550 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 409 Effective length of database: 1,732,333,088 Effective search space: 708524232992 Effective search space used: 708524232992 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)