BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0056.p (301 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJ76.1 B3KJ76_9BACI Putative uncharacterized protein 367 e-100 B1DJI2.1 B1DJI2_9BACL Putative uncharacterized protein 313 1e-83 C2W3R8.1 C2W3R8_BACCE NAD dependent epimerase/dehydratase 270 1e-70 C4L343.1 C4L343_EXISA Putative uncharacterized protein 270 1e-70 B7GII1.1 B7GII1_ANOFW NAD dependent epimerase/dehydratase family... 269 2e-70 >B3KJ76.1 B3KJ76_9BACI Putative uncharacterized protein Length = 301 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 174/301 (57%), Positives = 223/301 (74%), Gaps = 2/301 (0%) Query: 1 MKYLICGGSGFIGRELTEYWLQGGHQIIVVGRKQPEA-RTAAHPALSFLTWDSLASHPEL 59 M+ ICGG+GFIG+ L + WL+ GH +I+V R +PE + +LS+LTWD + SHPE Sbjct: 1 MRIAICGGTGFIGQALCKRWLRDGHDMIIVTRSKPEIPAVQQNGSLSYLTWDEMKSHPER 60 Query: 60 AYGADALVNLAGSSLSQRWSPSGKKSIMQSRLETVSAAARLLNALQNKPPVVIQSSAIAI 119 G DALVNLAGSSLSQRW+ +GK I+QSR TV+AAA L+ L++KPPV++Q+SA+AI Sbjct: 61 FEGLDALVNLAGSSLSQRWTQAGKTRILQSRQRTVTAAADLMRRLEHKPPVILQASAMAI 120 Query: 120 YGTSLEDTYDETSPAQVMDFPSGVVEAWEGAADEAYKGVRVVKLRTGVVLGNESGAFPKM 179 YGTS + +DE SPA +MDFPS VV+ WE AAD R++KLR VVLG++ GA PKM Sbjct: 121 YGTSEFEAFDEDSPATIMDFPSEVVQQWEQAAD-CIPVDRLIKLRISVVLGDQGGALPKM 179 Query: 180 KLPYMLGFGGKIGSGKQWLSWISLTDIVRLIDFCVQTPGIEGPVNATAPHPVTNEAFGKM 239 LPY LG GG IGSGKQWLSWI + DIV LID+C++ I G VNA +PH VTNE FG+ Sbjct: 180 LLPYKLGVGGNIGSGKQWLSWIHIDDIVELIDYCIRHEDISGAVNAASPHAVTNEEFGRS 239 Query: 240 IGRVYHRPHWFPIPAFLLKTAVGELSEILLKGQRVLPSKALEHGFTFTYPTLQPALEHLK 299 + +VY RPHW P+PAF+L+ +GE+S ILLKGQR+LP+KA HGF F YP + AL+ +K Sbjct: 240 VSKVYRRPHWLPLPAFMLQAILGEMSLILLKGQRILPAKAQRHGFKFRYPEVTAALQQIK 299 Query: 300 G 300 G Sbjct: 300 G 300 >B1DJI2.1 B1DJI2_9BACL Putative uncharacterized protein Length = 300 Score = 313 bits (802), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 150/298 (50%), Positives = 203/298 (68%), Gaps = 1/298 (0%) Query: 1 MKYLICGGSGFIGRELTEYWLQGGHQIIVVGRKQPEARTAAHPALSFLTWDSLASHPELA 60 M+ + GG+GF+GR L L+ G ++ VV RK + + + L +TWD LA+ P+ Sbjct: 1 MRVAVTGGTGFVGRTLVIALLERGDEVTVVSRKGTPSASPQNARLHHMTWDELAASPQRL 60 Query: 61 YGADALVNLAGSSLSQRWSPSGKKSIMQSRLETVSAAARLLNALQNKPPVVIQSSAIAIY 120 G D +VNLAG S++QRW+ + K+ ++ SR++ + A+L+ L KP VI +S I+ Y Sbjct: 61 EGTDVIVNLAGESINQRWTEASKQRVLHSRIDAAARIAKLVTELHTKPEAVINASGISAY 120 Query: 121 GTSLEDTYDETSPAQVMDFPSGVVEAWEGAADEAYKGVRVVKLRTGVVLGNESGAFPKMK 180 G SL T+ E SP +V DF SGVVE WE AAD + R+VKLR GVVL GAFP M Sbjct: 121 GNSLTATFAEDSPLKVTDFLSGVVEHWEKAAD-SIPVKRLVKLRVGVVLNRTGGAFPLMS 179 Query: 181 LPYMLGFGGKIGSGKQWLSWISLTDIVRLIDFCVQTPGIEGPVNATAPHPVTNEAFGKMI 240 LP+ L GG++GSG QWLSWI L D+VRLI FC+ I+GPVNA+AP PVTN+ FG+ + Sbjct: 180 LPHRLFAGGRLGSGSQWLSWIHLEDLVRLILFCMDHREIQGPVNASAPEPVTNDQFGRAL 239 Query: 241 GRVYHRPHWFPIPAFLLKTAVGELSEILLKGQRVLPSKALEHGFTFTYPTLQPALEHL 298 G+ + RPHW P PAFLLK +GE+S +LL+GQR LP KALE+GFTF YPT++ A++ L Sbjct: 240 GKAFGRPHWLPTPAFLLKAVLGEMSSLLLEGQRALPRKALENGFTFKYPTIESAMKQL 297 >C2W3R8.1 C2W3R8_BACCE NAD dependent epimerase/dehydratase Length = 312 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 136/300 (45%), Positives = 188/300 (62%), Gaps = 5/300 (1%) Query: 1 MKYLICGGSGFIGRELTEYWLQGGHQIIVVGRKQPEARTAAHPALSFLTWDSLASHPELA 60 +K I GG+GFIG+ L ++ GH + ++ R + E + + ++ WD+ + L Sbjct: 11 LKIAISGGTGFIGKALANFFDLQGHTVYILTRNKRE--NPLNSNIHYIQWDTHSHDFPLT 68 Query: 61 YGADALVNLAGSSLSQ-RWSPSGKKSIMQSRLETVSAAARLLNALQNKPPVVIQSSAIAI 119 Y D +VNLAG S++ RW+ KK I+ SRL T S+ + L LQ KP I +SAI Sbjct: 69 Y-IDVVVNLAGESINNGRWTKKQKKHIIASRLHTTSSLIKQLQTLQKKPHTFINASAIGY 127 Query: 120 YGTSLEDTYDETSPAQVMDFPSGVVEAWEGAADEAYK-GVRVVKLRTGVVLGNESGAFPK 178 YGTS T+ E DF + V+ WE AA A G+R + R G+VLG + GA PK Sbjct: 128 YGTSETKTFTEQYKESGSDFLATTVKQWEEAASNATSLGMRTIYTRFGIVLGKDGGALPK 187 Query: 179 MKLPYMLGFGGKIGSGKQWLSWISLTDIVRLIDFCVQTPGIEGPVNATAPHPVTNEAFGK 238 M LPY L GG IGSG QWLSWI L D++R+IDF + T IEGP+N TAP+P T + FGK Sbjct: 188 MLLPYKLFIGGTIGSGNQWLSWIHLDDVIRMIDFAIHTKEIEGPLNITAPNPTTMQEFGK 247 Query: 239 MIGRVYHRPHWFPIPAFLLKTAVGELSEILLKGQRVLPSKALEHGFTFTYPTLQPALEHL 298 M+ V HRPHW P+PA L +GE+S ++L+GQ VLP KAL++GF +++PTL+ AL++L Sbjct: 248 MLSLVMHRPHWLPVPAVALHALLGEMSMLVLQGQHVLPEKALQNGFQYSFPTLKHALQNL 307 >C4L343.1 C4L343_EXISA Putative uncharacterized protein Length = 302 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 145/302 (48%), Positives = 187/302 (61%), Gaps = 8/302 (2%) Query: 1 MKYLICGGSGFIGRELTEYWLQGGHQIIVVGRKQPEARTAAHPALSFLTWDSLASHPELA 60 MK I GG+G IG+ L GHQ++V+ R P R H +SF+ W + S PE Sbjct: 1 MKIAITGGTGLIGQPLVRALADAGHQVVVLTR-HPRPR---HRGVSFIEWLTPNSKPEEE 56 Query: 61 Y-GADALVNLAGSSLSQ-RWSPSGKKSIMQSRLETVSAAARLLNALQNKPPVVIQSSAIA 118 G DA ++LAG+S++ RW+ K++I+QSR+E R++ L+ KP VVI SAI Sbjct: 57 LEGTDAFIHLAGASINDGRWTHKQKQAILQSRIEGTKEVVRIIQQLKQKPQVVISGSAIG 116 Query: 119 IYGTSLEDTYDETSPAQV-MDFPSGVVEAWEGAADEAYK-GVRVVKLRTGVVLGNESGAF 176 IYG TY E +P +F V WE A+ GVR+V +RTGVVL N+ GAF Sbjct: 117 IYGEDRSITYSEETPLPTRTNFLGNVCVLWEQEAEPIRDLGVRLVTMRTGVVLSNDGGAF 176 Query: 177 PKMKLPYMLGFGGKIGSGKQWLSWISLTDIVRLIDFCVQTPGIEGPVNATAPHPVTNEAF 236 P MKLPY G GGKIGSG+QW+ WI L D+VRL + T IEGPVN TAP PVT F Sbjct: 177 PLMKLPYQFGVGGKIGSGEQWVPWIHLDDLVRLFVHVIDTDSIEGPVNGTAPTPVTMNEF 236 Query: 237 GKMIGRVYHRPHWFPIPAFLLKTAVGELSEILLKGQRVLPSKALEHGFTFTYPTLQPALE 296 GK I V HRPHW P PA +++ +GE S I+L+G +V+P+KAL+HGF F Y TL+PAL Sbjct: 237 GKTIANVMHRPHWIPAPAPMMELVLGEKSVIVLEGAKVVPTKALQHGFEFRYETLEPALT 296 Query: 297 HL 298 L Sbjct: 297 QL 298 >B7GII1.1 B7GII1_ANOFW NAD dependent epimerase/dehydratase family enzyme Length = 302 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 134/299 (44%), Positives = 188/299 (62%), Gaps = 7/299 (2%) Query: 1 MKYLICGGSGFIGRELTEYWLQGGHQIIVVGRKQPEARTAAHPALSFLTW--DSLASHPE 58 M LI GG+GF+G+ LT ++ Q GH + ++ R + P + + W D + H + Sbjct: 1 MNILIAGGTGFVGKALTAHFTQNGHHMYILTRNAQKREND--PYIHHVQWLTDGVNPHEQ 58 Query: 59 LAYGADALVNLAGSSL-SQRWSPSGKKSIMQSRLETVSAAARLLNALQNKPPVVIQSSAI 117 L D ++NLAG S+ S RW+ + K++IM+SRL+ A L+ + KP VVIQ+SAI Sbjct: 59 LP-SIDVIINLAGESINSGRWNETRKRAIMESRLQATHAIYELITKMNKKPQVVIQASAI 117 Query: 118 AIYGTSLEDTYDETSPAQVMDFPSGVVEAWEGAADEAYK-GVRVVKLRTGVVLGNESGAF 176 IYGTSL DT+ E MDF + V+ WE A GVR V +R G++LG GA Sbjct: 118 GIYGTSLNDTFTERHETIGMDFLAQTVKRWEEAGRRIESLGVRTVFMRFGIILGKNGGAL 177 Query: 177 PKMKLPYMLGFGGKIGSGKQWLSWISLTDIVRLIDFCVQTPGIEGPVNATAPHPVTNEAF 236 P++ LPY GG IGSGKQW+SW+ + D+V IDF ++ I G +N TAPHPVT E F Sbjct: 178 PRIVLPYKWFIGGTIGSGKQWMSWVHINDVVGAIDFAIRHENILGSINVTAPHPVTMEQF 237 Query: 237 GKMIGRVYHRPHWFPIPAFLLKTAVGELSEILLKGQRVLPSKALEHGFTFTYPTLQPAL 295 GK I +V HRPHW P+P+F LK +GE+S ++L+GQRV+P K L+ G+ F++PT+ AL Sbjct: 238 GKTIAKVLHRPHWLPVPSFALKLLLGEMSMLVLEGQRVIPEKLLQAGYHFSFPTVDRAL 296 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,914,369,332 Number of extensions: 80054686 Number of successful extensions: 211488 Number of sequences better than 1.0e-05: 853 Number of HSP's gapped: 209188 Number of HSP's successfully gapped: 854 Length of query: 301 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 166 Effective length of database: 1,788,859,178 Effective search space: 296950623548 Effective search space used: 296950623548 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)