BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0051.p (354 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B5Z5Y2.1 B5Z5Y2_BACCE Putative uncharacterized protein 77 2e-12 C3FWG8.1 C3FWG8_BACTB Putative uncharacterized protein 72 1e-10 C3EUY6.1 C3EUY6_BACTK Putative uncharacterized protein 72 1e-10 B8I0A5.1 B8I0A5_CLOCE Putative uncharacterized protein 59 8e-07 >B5Z5Y2.1 B5Z5Y2_BACCE Putative uncharacterized protein Length = 378 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 74/272 (27%), Positives = 126/272 (46%), Gaps = 27/272 (9%) Query: 1 MKIFSFGMDQLTVNEIKLAG-FTVVTQNVLPEPSQTQGQMLMVTSEQVPVTALSELRQGY 59 MK+F D+ +N+IK FT V Q E S G L+++ +P + LS + + Sbjct: 1 MKLFVMSSDEALINKIKERKVFTSVQQINDVEKSSKDG-YLLISDRVLPYSELSTIE--F 57 Query: 60 PNSSILYV----YRQKGVRSYQAIHMFCESLGIFFIPPRSTSSAIVEKLRYILXXXXXXX 115 N + Y+ Y+ + + +AI C S I+ IPPR IV+ + L Sbjct: 58 ENKKVFYMLENQYKPQLESTVKAI---CNSKDIYLIPPRLVVEQIVDFIDQNLNLAMVQK 114 Query: 116 GNLVGFFGSGPGIG----CTSVAKLFARRIAAAGQRVILLGLDLYDPGFDRKT--AISLD 169 N++ FF S IG C SV K ++ A +V +L L+ +D G D+ +D Sbjct: 115 TNIITFFSSVSNIGTTSTCLSVGKALSQYTNA---KVGVLLLNAWDSGTDQLNFKGNYMD 171 Query: 170 RLRPRMTGKMLQP-----ADFEGLVKQEGYAYLPGNFDFLSVQDYQEEEIEYLLAQAAEN 224 +++ ++ K + + F +V Y L GN D + + +EEI YL+ + + Sbjct: 172 QVKSKLASKTISSEQEFLSQFH-MVNPNLYI-LGGNRDTKMERLFTKEEINYLIEHSKQT 229 Query: 225 ADVVVADFGSVPESAAWYVGMQKSALRLIVTH 256 DVV+ D GS ++A + +S LR ++ + Sbjct: 230 FDVVLVDAGSHFDNANMVQALNESNLRFLIMN 261 >C3FWG8.1 C3FWG8_BACTB Putative uncharacterized protein Length = 373 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 122/264 (46%), Gaps = 27/264 (10%) Query: 9 DQLTVNEIKLAG-FTVVTQNVLPEPSQTQGQMLMVTSEQVPVTALSELRQGYPNSSILYV 67 D+ +N+IK FT V Q E S G L+++ +P + LS + + N + Y+ Sbjct: 4 DEALINKIKERKVFTSVQQINDVEKSSKDG-YLLISDRVLPYSELSTIE--FENKKVFYM 60 Query: 68 ----YRQKGVRSYQAIHMFCESLGIFFIPPRSTSSAIVEKLRYILXXXXXXXGNLVGFFG 123 Y+ + + +AI C S I+ IPPR IV+ + L N++ FF Sbjct: 61 LENQYKPQLESTVKAI---CNSKDIYLIPPRLVVEQIVDFIDQNLNLAMVQKTNIITFFS 117 Query: 124 SGPGIG----CTSVAKLFARRIAAAGQRVILLGLDLYDPGFDRKT--AISLDRLRPRMTG 177 S IG C SV K ++ A +V +L L+ +D G D+ +D+++ ++ Sbjct: 118 SVSNIGTTSTCLSVGKALSQYTNA---KVGVLLLNAWDSGTDQLNFKGNYMDQVKSKLAS 174 Query: 178 KMLQP-----ADFEGLVKQEGYAYLPGNFDFLSVQDYQEEEIEYLLAQAAENADVVVADF 232 K + + F +V Y L GN D + + +EEI YL+ + + DVV+ D Sbjct: 175 KTISSEQEFLSQFH-MVNPNLYI-LGGNRDTKMERLFTKEEINYLIEHSKQTFDVVLVDA 232 Query: 233 GSVPESAAWYVGMQKSALRLIVTH 256 GS ++A + +S LR ++ + Sbjct: 233 GSHFDNANMVQALNESNLRFLIMN 256 >C3EUY6.1 C3EUY6_BACTK Putative uncharacterized protein Length = 373 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 122/264 (46%), Gaps = 27/264 (10%) Query: 9 DQLTVNEIKLAG-FTVVTQNVLPEPSQTQGQMLMVTSEQVPVTALSELRQGYPNSSILYV 67 D+ +N+IK FT V Q E S G L+++ +P + LS + + N + Y+ Sbjct: 4 DEALINKIKERKVFTSVQQINDVEKSSKDG-YLLISDRVLPYSELSTIE--FENKKVFYM 60 Query: 68 ----YRQKGVRSYQAIHMFCESLGIFFIPPRSTSSAIVEKLRYILXXXXXXXGNLVGFFG 123 Y+ + + +AI C S I+ IPPR IV+ + L N++ FF Sbjct: 61 LENQYKPQLESTVKAI---CNSKDIYLIPPRLVVEQIVDFIDQNLNLAMVQKTNIITFFS 117 Query: 124 SGPGIG----CTSVAKLFARRIAAAGQRVILLGLDLYDPGFDRKT--AISLDRLRPRMTG 177 S IG C SV K ++ A +V +L L+ +D G D+ +D+++ ++ Sbjct: 118 SVSNIGTTSTCLSVGKALSQYTNA---KVGVLLLNAWDSGTDQLNFKGNYMDQVKSKLAS 174 Query: 178 KMLQP-----ADFEGLVKQEGYAYLPGNFDFLSVQDYQEEEIEYLLAQAAENADVVVADF 232 K + + F +V Y L GN D + + +EEI YL+ + + DVV+ D Sbjct: 175 KTISSEQEFLSQFH-MVNPNLYI-LGGNRDTKMERLFTKEEINYLIEHSKQTFDVVLVDA 232 Query: 233 GSVPESAAWYVGMQKSALRLIVTH 256 GS ++A + +S LR ++ + Sbjct: 233 GSHFDNANMVQALNESNLRFLIMN 256 >B8I0A5.1 B8I0A5_CLOCE Putative uncharacterized protein Length = 388 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 54/244 (22%), Positives = 106/244 (43%), Gaps = 24/244 (9%) Query: 71 KGVRS-YQAIHMFCESLGIFFIPPRSTSSAIVEKLRYILXXXXXXXGNLVGFFGSGPGIG 129 KG +S Y ++ +S GI +PP+ T S ++ + I+ N+V FG+ +G Sbjct: 74 KGSQSGYSSLTALLKSHGISILPPKLTESQLLLRFCEIINLQERKTNNVVVLFGADSKVG 133 Query: 130 CTSVAKLFARRIAAAGQ-RVILLGLD-----LYDPGFDRKTAISLDRLRPRMTGKMLQPA 183 T A A +A + + L + Y ++ K +D +R ++ K+L Sbjct: 134 TTLTALSIAENMAEQSEGNIAFLNMSGHLSYTYVENYEGK---GMDSIRSKVFNKILSKD 190 Query: 184 DF-EGLVKQ---EGYAYLPGNFDFLSVQDYQEEEIEYLLAQAAENADVVVADFGSVPESA 239 + E +V+ + LP + + Y+ + IEY++ A++ D V+ D G P + Sbjct: 191 ELREAMVRSRELKNLYMLPPCKTLIDFKYYKTDHIEYVIDMASKIFDAVIVDAGWYPHNE 250 Query: 240 AWYVGMQKSALRLIVTHPRHEYRLQPLMELAGHMDLYPQ---DFQWIINRSNVEEMTSPK 296 ++ + + R +VT P+ L H + Q ++ ++N E+ +P Sbjct: 251 LYFGAINSTPNRYMVTTPQQS-------SLYSHRIIKQQALDEYGITERKNNAEKRDTPN 303 Query: 297 NLAL 300 N+ L Sbjct: 304 NILL 307 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,038,640,911 Number of extensions: 82515378 Number of successful extensions: 193735 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 193734 Number of HSP's successfully gapped: 6 Length of query: 354 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 217 Effective length of database: 1,770,017,148 Effective search space: 384093721116 Effective search space used: 384093721116 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)