BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0307.0043.p
         (757 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A4XMS4.1 A4XMS4_CALS8 PKD domain containing protein                   144   3e-32
Q2B8M8.1 Q2B8M8_9BACI Secreted protein containing cell-adhesion ...   122   1e-25

>A4XMS4.1 A4XMS4_CALS8 PKD domain containing protein
          Length = 2174

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 155/339 (45%), Gaps = 31/339 (9%)

Query: 442  PKYIKAGSD-MMVYGGNSSDPDGYITDYAWGTPGA--EGGIENTARGYVWYTRDKVGETF 498
            P  I  G D  ++   + +D D   T  A    G   EG  +N  +    +  D+ G T+
Sbjct: 870  PSVIPQGDDAFLIATASDTDKDDSATITAITANGGNIEGFAQNKNQATATFWSDETG-TY 928

Query: 499  PITLTVVDNDGMTGSTSTEVTVIEPRPSADLEISGSLKQNRKTTLTNSSS--SPTRFPII 556
              T    D  G TG+  T +TVI   P     ISG+LK+NRK  L  S S     R  II
Sbjct: 929  AATAVATDTKGATGTAQTSITVIPAIPRPVCYISGTLKENRKVVLDASGSYAGSRRAYII 988

Query: 557  KSRTQVTISAVSGGTNAD-IKYSGSLAELESKDVLFRIPGKYRATIHVENTAGYASDKEI 615
             S  Q  I+ V     A+ I    SL   +  + LF++ G+YR  + + N  G ++    
Sbjct: 989  WSAAQWKITPVDSSIPANSINVVESLTGSQKLNCLFKVAGRYRVDLTLTNNYGNSATGTW 1048

Query: 616  TFDIAPDESPVAYFAMPIGAYRDPTNGNKAVISIDDMSFSSDKDNITRRIWEYRYDSNNN 675
              DI PDE PV  F  P    RDP + ++A I I   S+S D D I + +W Y +DSNN+
Sbjct: 1049 YLDIKPDEKPVVSFTTPTKILRDPADNSQASIQITSNSYSPDNDIIAKHVWFYAWDSNND 1108

Query: 676  GSFTDEGWV-----------------------QFSSENKTRLNLELYQVGKYEVRVTVIE 712
            G+F +E W                         F S N T +  ++  VG Y++ + V E
Sbjct: 1109 GNFDNETWYVRKADGTWQAVGDYNKVLGFDLENFDSGNNTTITFKVTNVGNYKIELWVRE 1168

Query: 713  EFGQPTIEDFVTDADRLRTSSEATQNVIERIVEVNNRPP 751
            EFGQ TI+ FVT  DR R  S    +  ++ +EV N  P
Sbjct: 1169 EFGQETIDQFVTPYDRRRNISTNIDD-DKKTIEVLNVAP 1206


>Q2B8M8.1 Q2B8M8_9BACI Secreted protein containing cell-adhesion domains
          Length = 1707

 Score =  122 bits (307), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/334 (32%), Positives = 153/334 (45%), Gaps = 46/334 (13%)

Query: 455 GGNSSDPDGYITD---YAWGTPGAEGGIENTARGYVWYTRDKVGETFP--ITLTVVDNDG 509
           G    DPDG I     Y  G P  +G   N++R         V E  P  +   V DN G
Sbjct: 307 GAYDPDPDGEIASEQLYVDGVP-IDGKTWNSSR---------VTEKTPHQVDFVVEDNMG 356

Query: 510 MTGSTSTEVTVIEPRPSADLEISGSLKQNRKTTLTNSSS---SPTRF-PIIKSRTQVTIS 565
            T S S    +    P A++++ G LKQNR  T    +S   SP  F PI  S T+  I 
Sbjct: 357 ETASDSDTFEIWPTIPKAEVKMEGELKQNRALTFDAKASDLVSPIEFAPIEYSLTKWNIV 416

Query: 566 AVSGG-TNADIKYSGSLAELESKDVLFRIPGKYRATIHVENTAGYASD---KEITFDIAP 621
            VS G TN D+K      +   + VLF+ PG Y   + V N     S+   KE+   + P
Sbjct: 417 PVSDGLTNEDVKIRPD-KDPSLRKVLFKKPGTYELHLTVTNKFNEESEVLIKELV--VRP 473

Query: 622 DESPVAYFAMPIGAY-RDPTNGNKAVISIDDMSFSSDKDNITRRIWEYRYDSNNNGSF-- 678
           DE P A F +    Y RD ++GN+A I++ D S S D D I +RIW   +D+NN+G F  
Sbjct: 474 DEKPFARFTVDKAVYLRDQSDGNQATITLTDGSVSMDGDTIAQRIWYKEFDANNDGIFGT 533

Query: 679 -TDEGWVQFSSENKTRLNLELYQVGKYEVRVTVIEEFGQPTIEDFVTDADRLRTSSEATQ 737
             D G     S NKT +  +   VG Y   + V E FG PT E+F+   + L  +S+   
Sbjct: 534 AADGGKEILDSGNKTSITFKTNHVGNYRFSLEVKEAFGAPTYEEFILPEEYLTDTSDVID 593

Query: 738 NV----------------IERIVEVNNRPPEVDW 755
                              ++ V+V+N PP +D+
Sbjct: 594 EAGTVSVYLDPGNFNIPTSDKGVKVDNAPPVIDF 627


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.311    0.129    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 4,442,809,476
Number of extensions: 188449401
Number of successful extensions: 396628
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 396703
Number of HSP's successfully gapped: 2
Length of query: 757
Length of database: 3,060,696,203
Length adjustment: 144
Effective length of query: 613
Effective length of database: 1,704,070,043
Effective search space: 1044594936359
Effective search space used: 1044594936359
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 135 (56.6 bits)