BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0307.0042.p
         (1259 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A4XMS4.1 A4XMS4_CALS8 PKD domain containing protein                   145   2e-32
Q2B8M8.1 Q2B8M8_9BACI Secreted protein containing cell-adhesion ...   124   8e-26
B1D696.1 B1D696_9BACL PKD domain containing protein                    92   5e-16
B3TAH7.1 B3TAH7_9ZZZZ Putative PKD domain protein                      67   1e-08
P33747.2 Y4160_CLOAB Uncharacterized protein CA_P0160                  64   1e-07

>A4XMS4.1 A4XMS4_CALS8 PKD domain containing protein
          Length = 2174

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/333 (33%), Positives = 163/333 (48%), Gaps = 33/333 (9%)

Query: 343  DSEGDAKHGERYRFDHDPYFFDNSMGIIGDSGLWRSSVYPSFPYSGVYVATFQGRDN-PK 401
            D E D    +R+R++HD   FDNS+G     G+W ++    F   G Y  TFQ +DN P 
Sbjct: 1545 DYENDVIINQRWRYEHDETVFDNSLGKAEFDGIWLNAPIEVFNKVGKYTVTFQVQDNPPP 1604

Query: 402  NDDRFDVYRKWSRDNLSSMTFHVHRKPIALFSA--KLMGGWLQITDSSYDLDH-ITASNK 458
                FD Y+ WS+     M  +VHR+PIA F+A      G + ITD SYD DH    ++K
Sbjct: 1605 GSSDFDEYKLWSKLE-RQMVLYVHRRPIADFTAVYNKSTGKVTITDKSYDPDHQYNRADK 1663

Query: 459  GLMDWQWQYKKTEGQVWTD----GFPPAQLPGNDQYDIRLRVRDVDGENGAGVWSDWSQQ 514
            G++ W+WQYK  +   WTD          L     Y I+L V+D DG NG GVWS     
Sbjct: 1664 GIIAWKWQYKTLDDTTWTDTTLANLQNMTLQSGKIYLIKLTVQDCDGPNGIGVWSKPKIA 1723

Query: 515  TVG-AAYNLPPVALFTVEPSIVSYRKATTIIDKSFDPDNDPLDVYNWTVI-KDGWQQVWS 572
             +  +  N PPVA FT++  I+   +   + DKS+DPD D +  ++W +   DG     +
Sbjct: 1724 MIDLSVSNNPPVADFTIDSEILKGNQPGNLTDKSYDPDGDAITAWHWWIYNSDGST---N 1780

Query: 573  HWGGATTPPN-------IAAYGVGTYQLTLKVHDNRG-----------LWSEPYSQTVQV 614
               G TT  N       IA    G+Y+L+L+V D+ G           ++S     T ++
Sbjct: 1781 KDFGETTNNNISNIKSYIATMSEGSYKLSLQVKDSVGNYSAVTTKQFKIYSPSKDTTPEL 1840

Query: 615  INHPPAAAFSMPTEVYRDTVITMENMTPDPDED 647
             N+PP   F+M    +R T +       DP+ D
Sbjct: 1841 TNNPPTGTFTMTIADHR-TKLKPATTYSDPNND 1872


>Q2B8M8.1 Q2B8M8_9BACI Secreted protein containing cell-adhesion domains
          Length = 1707

 Score =  124 bits (310), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 177/380 (46%), Gaps = 57/380 (15%)

Query: 329  VLVNTPVETKTKFFDSEGDAKHGERYRFDHDPYFFD-NSMGIIGDSGLWRSSVYPSFPYS 387
            +++   ++  T + D E D +    ++FDHDP   +   +     S + +S +Y + P  
Sbjct: 957  IVLGDQLDYTTAYQDYENDPELQREWKFDHDPTSVNGRKIDAAPSSPIAQSGLYINQPIQ 1016

Query: 388  ----GVYVATFQGRDNP----KNDDRFDVYRKWSRDNL-SSMTFHVHRKPIALFSAKLMG 438
                G Y  T + +DNP     ND RF  Y+KWS + +      +VHR+PIA F+A++  
Sbjct: 1017 LNEVGTYSITLRAKDNPLTDIGNDLRFTEYQKWSDEEIVREYKVNVHRRPIADFTAEVEP 1076

Query: 439  GWLQITD---SSYDLDH------ITASNKGLMDWQWQYKKTEGQVWTDGFPPAQLPGNDQ 489
            G L+++     SYD DH      +  + KG++++ W+ K     V   G PP  L     
Sbjct: 1077 GTLRLSLDPYQSYDPDHQYNWSSLGIAEKGIVEYSWE-KYVVDDVEHTGAPPEFLEPLKD 1135

Query: 490  YDIRLRVRDVDGENGAGVWSDWSQQTVGAAYNLPPVALFTVEPSIVSYRK------ATTI 543
            Y I LRV+D+DG  G       ++       NL P+ALF    +++   +       + I
Sbjct: 1136 YYITLRVKDIDGAYGYT-----TKLVSTKTINLKPIALFDSPSTVLRTDRLNDPTTTSYI 1190

Query: 544  IDKSFDPDNDPLDVYNWTVIKDGWQQVWSHWGGATTPPNIAAYGV--GTYQLTLKVHD-- 599
             D+S+DP+ DPL  YNWT+ +     V   W G+T P N AA  +  G Y + L V D  
Sbjct: 1191 YDRSYDPNGDPLTNYNWTIKRQSDGLV--VWNGSTPPVNFAAINLPAGKYMIGLTVWDIP 1248

Query: 600  --NRGLWSEPYSQTVQVI-NHPPAAAFSMPTEVYRDTVITMENMTPDP------------ 644
                 L S+ Y + + V+ N+PP + F +   +   + I+  N +  P            
Sbjct: 1249 KYPPALQSDLYEREITVLTNNPPKSCFDLSRTIINKSTISCVNYSTSPHTLYVDEPAIYT 1308

Query: 645  ----DEDG-DVLSYAWNARI 659
                D DG ++++Y+W   +
Sbjct: 1309 GNSSDPDGHNLINYSWKVEL 1328


>B1D696.1 B1D696_9BACL PKD domain containing protein
          Length = 2171

 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 80/147 (54%), Gaps = 7/147 (4%)

Query: 1119 ISPRKYFMVNLLTVKGGVKHTEEWNANRQAYNLKQSGDPESPRAYNVYWAGEAFVLQAKT 1178
            +   K   V  L + G +KHTE+W+  R+ +N KQSG  +SPR YNV+WAGE F+L A T
Sbjct: 2026 VQSEKKVKVLALGLTGYLKHTEQWDEKRKEFNKKQSGREDSPRGYNVFWAGEKFLLSAST 2085

Query: 1179 TGL-----PDTVQVTMTGGYTTQLTPADSDKLIWDGQLTDPSFEKLPNGPVTFTFTA-TN 1232
            T        + V+V M   Y+  LT ++S +  W G L + SF     GP+ F FTA  N
Sbjct: 2086 TNTGTATKAERVEVAMK-SYSASLTSSNSSRSSWQGDLWEASFSDFKKGPLIFEFTAYYN 2144

Query: 1233 EYQTKVDTVTVVISEDWTEYFRSHRIK 1259
                K DTVTV I  +  +    HR+K
Sbjct: 2145 NGMVKRDTVTVQIEGNVYDIVGVHRVK 2171



 Score = 68.6 bits (166), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 78/149 (52%), Gaps = 17/149 (11%)

Query: 815  PSMTITSPAGTSENPSVLDAEKQGDPLVEWTYSDPENDPQEKYRLEF-FTKEG--ILEKS 871
            P M I  P GT  +P++L     G+P++ WTYSD + DPQEK+ L+  +   G  I+E +
Sbjct: 1630 PQMIIAYPGGTLTSPTLLG----GEPVLRWTYSDADRDPQEKFYLKVSYVDNGAAIMEGT 1685

Query: 872  VENADNTGLIRQYQVPNPTFNRFEYFTVLGRAYSKGSWSEISNEKMFIIDNPPKPGFSLL 931
                D + ++ +         +     V GR YSKG WS+ SN   FI++ PP     LL
Sbjct: 1686 FPGDDTSFILDE------GIKQGRKVKVQGRVYSKGYWSDDSNIVYFILNTPPVT--HLL 1737

Query: 932  TDTGKDATKVPIYRTDVLS-IKSTATDLD 959
            +  G  A++ PIY  +    +K + TD+D
Sbjct: 1738 SFNGAKASE-PIYTNNNRPLLKVSVTDVD 1765


>B3TAH7.1 B3TAH7_9ZZZZ Putative PKD domain protein
          Length = 1368

 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 116/278 (41%), Gaps = 58/278 (20%)

Query: 591  YQLTLKVHDNRGLWSEPYSQTVQVINHPPAAAFSMPTEVYRDTVITMENMTPDPDEDGDV 650
            Y L L V D   +    +S  ++V+N  P   F  P + Y  T +TM  +    D DG +
Sbjct: 791  YTLILTVDDGNHI--VEHSLYIKVLNRLPKQVFDEPLQTYTLTPLTMPTVF--EDSDGMI 846

Query: 651  LSYAWNARINNSSYYYSGGNRNQVMTIRDLIARSGITQQQAISD----------GW---- 696
            + Y W         Y+ GG           +  SG++     SD          GW    
Sbjct: 847  VEYNW---------YFEGGVN---------LGGSGMSLTSNFSDTESVLQNPSVGWLEPG 888

Query: 697  ----EMRLTASDGTLSSNATRNFTVLNHVPTAAINGPA-----TVYQFDTKQYTSSDNDG 747
                 + +T  DG  SS AT    VLN  P A  + PA     TVY F++  +   D DG
Sbjct: 889  MKNVTIEVTDDDGN-SSIATLRVQVLNQRPVAVFSRPADGTVDTVYTFESVSF---DPDG 944

Query: 748  DPSDMASLQYFWKVTDSDGATKLYKTPSIEVSFPNSGIYTLEHWAVDQIGAKSNIDTLKV 807
            D +    LQ  W++++ D    +Y   S+  +F   G+YT+    +D  G  S   +  +
Sbjct: 945  DTT---LLQTIWEISELD--EPVYNVSSVSHTFLEPGLYTISLTVIDDRGLSSATKSYSI 999

Query: 808  NVLKNL-APSMTITSPAGTSENPSVLDAEKQGDPLVEW 844
             +   L  P++T + P   S N +VLD   + + +V W
Sbjct: 1000 RIENPLPVPALTFSCP---SINGTVLDGIPEDEGVVVW 1034


>P33747.2 Y4160_CLOAB Uncharacterized protein CA_P0160
          Length = 967

 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 142/321 (44%), Gaps = 63/321 (19%)

Query: 363 FDNSMGIIG-DSGLWRSSVYPSFPYSGVYVATFQGRDNPKNDDRFDVYRKWSRDNLSSMT 421
            DN +GI    +G W ++    F   G Y   ++ +DN                 + + T
Sbjct: 609 LDNDLGISDFANGQWVNNEINEFKKPGKYTIAYKFKDNA----------------IVNET 652

Query: 422 FHVHRKPIALFSA-----KLMGGW---LQITDSSYDLDHITAS--NKGLMDWQWQYKK-T 470
            +V+RKP  +F+A      + G +   ++  D SYD+DH  +    KG+++ ++Q+K+ T
Sbjct: 653 VNVNRKPTPIFTAYTAQDAVSGKYDVVIKDEDKSYDIDHENSDGDRKGIVNSKFQWKEVT 712

Query: 471 EG--QVWTDGFPPAQLPGNDQYDIRLRVRDVDGENGAGVWSD-WSQQTVGAAYNLPPVAL 527
           +G    W DG  P+    N  + ++L V+D++G+     WS+   +       N+ P A 
Sbjct: 713 QGVNDTWHDGKLPSGQDSNKDFIVKLEVQDLEGQ-----WSNPLVKYITTRNSNVAPHAQ 767

Query: 528 FTVEPSIV---------SYRKATTIIDKSFDPDNDPLDVYNWTVIKDGWQQVWSHWGGAT 578
           FT     +         S        D+S+D + D +  + W V  +    ++     +T
Sbjct: 768 FTESAEEMPVDQLNNDASVGMDAIFTDESYDANGDSIREH-WIVTDNNGNTIYD----ST 822

Query: 579 TPPNIAAYG---VGTYQLTLKVHD------NRGLWSEPYSQTVQV--INHPPAAAFSM-- 625
           + P  + +    +GTY +TL   D         L S+ Y+  +++  INH P A F +  
Sbjct: 823 SMPKASVFVGKPLGTYNVTLTCDDGPTPKVGAMLTSDSYTLQLKLVPINHKPVAKFEVDN 882

Query: 626 PTEVYRDTVITMENMTPDPDE 646
            ++V  D  IT ++  PD D+
Sbjct: 883 TSKVPADIKITEDSTDPDGDK 903


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 8,398,906,354
Number of extensions: 389049798
Number of successful extensions: 607454
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 607477
Number of HSP's successfully gapped: 19
Length of query: 1259
Length of database: 3,060,696,203
Length adjustment: 148
Effective length of query: 1111
Effective length of database: 1,666,385,983
Effective search space: 1851354827113
Effective search space used: 1851354827113
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 137 (57.4 bits)