BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0037.p (537 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B2A758.1 B2A758_NATTJ Peptidase M14 carboxypeptidase A 261 2e-67 A8VY68.1 A8VY68_9BACI Putative uncharacterized protein 249 6e-64 A3DI10.1 A3DI10_CLOTH Gamma-D-glutamyl-(L)-meso-diaminopimelate ... 212 1e-52 B4BAK5.1 B4BAK5_CLOTM Peptidase M14 carboxypeptidase A 209 6e-52 A7GD75.1 A7GD75_CLOBL Zinc carboxypeptidase family protein 204 1e-50 >B2A758.1 B2A758_NATTJ Peptidase M14 carboxypeptidase A Length = 379 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 122/307 (39%), Positives = 187/307 (60%), Gaps = 6/307 (1%) Query: 39 QAAANIVNPNQVYSYTVMQRDIERLVKEYPDLVSTESLGQTAYGRQLWAVKLGRGESVLF 98 Q +V+P Q Y+Y M++D+++L + Y DL+ ++G++ G+ L+AV++G ++ + Sbjct: 68 QDLDYVVDPYQTYTYDQMEQDLDQLKENYGDLLEVRTIGKSVLGKDLYAVRIGNEDNTIL 127 Query: 99 LNGSHHAREWMTSALLMKMIDTYAQAYYSNGKIADYNVRSLLDEVSIWVVPMVNPDGVTL 158 + SHHAREW+++ L MK +D YA Y N KI ++N+R +LD+V IW VPMVNPDGVTL Sbjct: 128 VEASHHAREWISTNLTMKKLDRYAYKYVQNEKIGEFNIREILDDVGIWFVPMVNPDGVTL 187 Query: 159 SQQGTAGLPVNLAQTLRRYNGN--STNFNRWKANMQGIDLNRQYPARWTTIQDAVKYPWY 216 Q+G G+P YN + +F WKAN+ G+DLNRQYPA W D + Sbjct: 188 HQKGLDGIPEEYHDEFVDYNVDWAGEDFYLWKANINGVDLNRQYPADWED-SDCTGVRFA 246 Query: 217 QNYKGQKPGQAPEVQMMMDFTHKVDPEVTISYHSSGEIIFWHFNTLNSNLARDKTMARAL 276 NYKG++P PE Q + +FT + P ISYH+ G++IFW+++ N +L RD+ + L Sbjct: 247 MNYKGEEPLSEPESQALYEFTKETKPLSAISYHTRGQVIFWYYH--NKHLERDQEIGDQL 304 Query: 277 GNLTGYSLVIPQKNPSGGGYKDWFIQEYGRPGFTIEIANYAG-ESSVPLRQFSGIWSENK 335 LTGY+L P+ + G + DWFIQ++ RP + +E+ + G E L W N+ Sbjct: 305 SELTGYTLYPPRPDYRGANFNDWFIQKFDRPAYILELVPFTGDEEDRDLDYLKTEWKNNR 364 Query: 336 EVGLYSA 342 EV ++ A Sbjct: 365 EVAVFLA 371 >A8VY68.1 A8VY68_9BACI Putative uncharacterized protein Length = 747 Score = 249 bits (635), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 128/301 (42%), Positives = 184/301 (61%), Gaps = 6/301 (1%) Query: 42 ANIVNPNQVYSYTVMQRDIERLVKEYPDLVSTESLGQTAYGRQLWAVKLGRGESVLFLNG 101 + ++ P Q YS+ M RD+E L YP+L+S S G++ GR + VKLG G+ + NG Sbjct: 449 SKVIQPRQNYSHQTMTRDLEVLEAMYPNLISVVSSGKSVQGRDIPVVKLGNGDKKVMFNG 508 Query: 102 SHHAREWMTSALLMKMIDTYAQAYYSNGKIADYNVRSLLDEVSIWVVPMVNPDGVTLSQQ 161 S HARE MT+ ++ MID YA+AY N + Y+ +LD+VSIW VPMVNPDGVTL Q+ Sbjct: 509 SFHAREHMTTNVMTNMIDEYARAYSQNRTLGRYSPSEILDDVSIWFVPMVNPDGVTLVQR 568 Query: 162 GTAGLPVNLAQTLRRYNGNSTNFNRWKANMQGIDLNRQYPARWTTIQDAVKYPWYQNYKG 221 G++G+ + +L ++N S NF WKAN++G+DLNRQ+P W+TI + P QNYKG Sbjct: 569 GSSGM--RESSSLIQWNNGSRNFTSWKANIRGVDLNRQFPTYWSTISNNPGRPAPQNYKG 626 Query: 222 QKPGQAPEVQMMMDFTHKVDPEVTISYHSSGEIIFWHFNTLNSNLARDKTMARALGNLTG 281 ++P PE M + +K + +SYHSSGE++F + LN ++ M+ + N+TG Sbjct: 627 RQPLTEPEAIFMYNLMNKHNFLAVMSYHSSGEVLFAR-SRLNGGMSE---MSNLMRNVTG 682 Query: 282 YSLVIPQKNPSGGGYKDWFIQEYGRPGFTIEIANYAGESSVPLRQFSGIWSENKEVGLYS 341 Y ++ + SGGGY DW G P T+EIA + G VPL Q+ +W N+ GL Sbjct: 683 YPILDLTSSRSGGGYSDWIAVSKGVPAITVEIAPFTGAMPVPLHQWDRVWQRNQHAGLAV 742 Query: 342 A 342 A Sbjct: 743 A 743 >A3DI10.1 A3DI10_CLOTH Gamma-D-glutamyl-(L)-meso-diaminopimelate peptidase I. Metallo peptidase. MEROPS family M14C EC=3.4.19.11 Length = 423 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 117/300 (39%), Positives = 174/300 (58%), Gaps = 14/300 (4%) Query: 51 YSYTVMQRDIERLVKEYPDLVSTESLGQTAYGRQLWAVKLGRGESVLFLNGSHHAREWMT 110 Y+Y +M+RDI+ L YP + T G + GR L+ ++LG G +F N +HHA EW+T Sbjct: 130 YTYEIMERDIQGLKARYP-FLETGVAGTSVLGRNLYYLRLGTGPRQVFYNAAHHAIEWIT 188 Query: 111 SALLMKMIDTYAQAYYSNGKIADYNVRSLLDEVSIWVVPMVNPDGVTLSQQGTAGLPVN- 169 + LLMK + + +AY + +I YNVR + ++ SI++VPMVNPDGV L G + P N Sbjct: 189 TVLLMKFAENFLKAYSTGSRIRGYNVREIWNQSSIYIVPMVNPDGVDLVLNGLS--PTNP 246 Query: 170 LAQTLRRYNGNSTNFNR-WKANMQGIDLNRQYPARWTTIQD-----AVKYPWYQNYKGQK 223 L R+N F++ W AN++G+DLNR YPA W + + P Y G Sbjct: 247 YYADLLRWNTTGRPFSQVWSANIRGVDLNRNYPASWEEAKAQEEALGIFGPGPTRYGGPY 306 Query: 224 PGQAPEVQMMMDFTHKVDPEVTISYHSSGEIIFWHFNTLNSNLARDKTMARALGNLTGYS 283 P PE M+ FT D + ++YHS G +I+W N LN T+A A ++GY Sbjct: 307 PLSEPESSAMVSFTRTHDFRLALAYHSQGRVIYW--NYLNLAPPESLTIANAFARVSGYI 364 Query: 284 LVIPQKNPSGGGYKDWFIQEYGRPGFTIEIANYAGESSVPLRQFSGIWSENKEVGLYSAL 343 ++ + GYKDWFIQEY RPGFTIE+ G++ +P+ QF+ I+++N+E+ L ++L Sbjct: 365 VLDVPYEAAYAGYKDWFIQEYRRPGFTIEVG--LGQNPLPISQFNTIYNDNEEILLLASL 422 >B4BAK5.1 B4BAK5_CLOTM Peptidase M14 carboxypeptidase A Length = 427 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 116/300 (38%), Positives = 173/300 (57%), Gaps = 14/300 (4%) Query: 51 YSYTVMQRDIERLVKEYPDLVSTESLGQTAYGRQLWAVKLGRGESVLFLNGSHHAREWMT 110 Y+Y +M+RDI+ L YP + T G + GR L+ ++LG G +F N +HHA EW+T Sbjct: 134 YTYEIMERDIQGLKARYP-FLETGVAGTSVLGRNLYYLRLGTGPRQVFYNAAHHAIEWIT 192 Query: 111 SALLMKMIDTYAQAYYSNGKIADYNVRSLLDEVSIWVVPMVNPDGVTLSQQGTAGLPVN- 169 + LLMK + + +AY + +I YNVR + ++ SI++VPMVNPDGV L G + P N Sbjct: 193 TVLLMKFAENFLKAYSTGSRIRGYNVREIWNQSSIYIVPMVNPDGVDLVLNGLS--PTNP 250 Query: 170 LAQTLRRYNGNSTNFNR-WKANMQGIDLNRQYPARWTTIQD-----AVKYPWYQNYKGQK 223 L R+N F++ W AN++G+DLNR YPA W + + P Y G Sbjct: 251 YYADLLRWNTTGRPFSQVWSANIRGVDLNRNYPASWEEAKAQEEALGIFGPGPTRYGGPY 310 Query: 224 PGQAPEVQMMMDFTHKVDPEVTISYHSSGEIIFWHFNTLNSNLARDKTMARALGNLTGYS 283 PE M+ FT D + ++YHS G +I+W N LN T+A A ++GY Sbjct: 311 TLSEPESSAMVSFTRTHDFRLALAYHSQGRVIYW--NYLNLAPPESLTIANAFARVSGYI 368 Query: 284 LVIPQKNPSGGGYKDWFIQEYGRPGFTIEIANYAGESSVPLRQFSGIWSENKEVGLYSAL 343 + + GYKDWFIQEY RPGFTIE+ G++ +P+ QF+ I+++N+E+ L+++L Sbjct: 369 VSDVPYEAAYAGYKDWFIQEYRRPGFTIEVG--LGQNPLPISQFNTIYNDNEEILLFASL 426 >A7GD75.1 A7GD75_CLOBL Zinc carboxypeptidase family protein Length = 423 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 116/314 (36%), Positives = 179/314 (57%), Gaps = 16/314 (5%) Query: 38 VQAAANIVNPNQVYSYTVMQRDIERLVKEYPDLVSTESLGQTAYGRQLWAVKLGRGESVL 97 V +IV+ N Y+Y +M++DI L + YP + G++ G+ L+ +KLG G + + Sbjct: 117 VPIGIDIVDTNVNYTYEIMEKDIMALKERYP-FIQVGVAGKSVLGKNLYYIKLGDGSNEV 175 Query: 98 FLNGSHHAREWMTSALLMKMIDTYAQAYYSNGKIADYNVRSLLDEVSIWVVPMVNPDGVT 157 F NG+HHA EW+T+ LLMK I+ +++AY GKI YN++ + + SI+++PMVNPDGV Sbjct: 176 FYNGAHHALEWITALLLMKFIEDFSRAYSEGGKIKGYNIKDIWNRSSIYIMPMVNPDGVD 235 Query: 158 LSQQGTAGLPVN--LAQTLRRYNGNSTNFNR-WKANMQGIDLNRQYPARWTTIQDA---- 210 L GL N L ++N ST+F++ W+AN++G+DLN Y A W + A Sbjct: 236 LV---INGLQRNNPYYDDLIKWNNGSTDFSKNWQANIKGVDLNHNYNASWYESKIAEESY 292 Query: 211 -VKYPWYQNYKGQKPGQAPEVQMMMDFTHKVDPEVTISYHSSGEIIFWHFNTLNSNLARD 269 V P Y G P PE + + DFT + + ++YHS GE+I+W + + AR+ Sbjct: 293 GVYGPGPTRYGGPYPESEPESRSVADFTRNHNFRLILAYHSQGEVIYWTYRDIIPPGARE 352 Query: 270 KTMARALGNLTGYSLVIPQKNPSGGGYKDWFIQEYGRPGFTIEIANYAGESSVPLRQFSG 329 + ++GY L S GYKDWFI ++ RPGFTIE+ G + +PL QF Sbjct: 353 --IGELFSKVSGYELSETVGIASYAGYKDWFIAQFKRPGFTIEVG--KGTNPLPLSQFDK 408 Query: 330 IWSENKEVGLYSAL 343 I+ +N E+ L + + Sbjct: 409 IYRDNIEILLLAPI 422 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.132 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,037,174,083 Number of extensions: 125223237 Number of successful extensions: 295576 Number of sequences better than 1.0e-05: 543 Number of HSP's gapped: 295137 Number of HSP's successfully gapped: 544 Length of query: 537 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 396 Effective length of database: 1,732,333,088 Effective search space: 686003902848 Effective search space used: 686003902848 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)