BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0031.p (211 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAV0.1 B3KAV0_9BACI Putative uncharacterized protein 350 5e-95 B1DJJ2.1 B1DJJ2_9BACL Putative uncharacterized protein 319 1e-85 C0Z746.1 C0Z746_BREBN Putative uncharacterized protein yvyE 234 3e-60 B4BNB8.1 B4BNB8_9BACI Putative uncharacterized protein 231 3e-59 A2RH67.1 A2RH67_BACME YvyE protein 227 6e-58 >B3KAV0.1 B3KAV0_9BACI Putative uncharacterized protein Length = 210 Score = 350 bits (898), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 164/210 (78%), Positives = 187/210 (89%) Query: 2 MLEQYRTVRSPGSREVVIRKSRFIGHVMPVETEEEAVQFIENIKKQHWNATHNCSAYMIG 61 ML++Y+TVR GS+E+VI+KSRFIGHVMPVETEEEAV FIE IKK+HWNATHNCSAYMIG Sbjct: 1 MLDRYKTVRQAGSKEIVIKKSRFIGHVMPVETEEEAVAFIEEIKKKHWNATHNCSAYMIG 60 Query: 62 ERDEIQRQSDDGEPSGTAGKPILEVIRSQNVKNVAIVVTRYFGGIMLGAGGLIRAYTDGA 121 ERDEIQ+QSDDGEPSGTAGKPILEVIR+Q KNVAIVVTRYFGGIMLGAGGLIRAYTDGA Sbjct: 61 ERDEIQKQSDDGEPSGTAGKPILEVIRNQGRKNVAIVVTRYFGGIMLGAGGLIRAYTDGA 120 Query: 122 VLALEAGEVITRVLRREVFVEIDYTWLGKVENELRGRGIQTGETLFTDKVTLLCLPRNDE 181 V A+E+GE ITRVL RE+FVE+DYTWLGKVENELR R ++ GET F D VTL CLP + + Sbjct: 121 VAAIESGEPITRVLHREIFVELDYTWLGKVENELRNRNVRMGETNFADTVTLTCLPLDGD 180 Query: 182 GDAFMAWITDLTQGQALVTEGRRLYYSEGE 211 ++FM W+ DLTQGQ+L+TEG RLY+ EGE Sbjct: 181 AESFMTWMVDLTQGQSLITEGERLYFIEGE 210 >B1DJJ2.1 B1DJJ2_9BACL Putative uncharacterized protein Length = 210 Score = 319 bits (817), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 152/210 (72%), Positives = 175/210 (83%) Query: 2 MLEQYRTVRSPGSREVVIRKSRFIGHVMPVETEEEAVQFIENIKKQHWNATHNCSAYMIG 61 MLE+Y TVR PGS EVVI+KSRFIG+ PVETEEEAV FIE IK+ H ATHNCSAY++G Sbjct: 1 MLERYSTVRGPGSEEVVIKKSRFIGYAKPVETEEEAVSFIEEIKRLHRTATHNCSAYVVG 60 Query: 62 ERDEIQRQSDDGEPSGTAGKPILEVIRSQNVKNVAIVVTRYFGGIMLGAGGLIRAYTDGA 121 ERD+ Q+ SDDGEPSGTAGKPILEVI+ + +KNVA+VVTRYFGGIMLGAGGL+RAYTDGA Sbjct: 61 ERDQHQKASDDGEPSGTAGKPILEVIKHKGLKNVAVVVTRYFGGIMLGAGGLVRAYTDGA 120 Query: 122 VLALEAGEVITRVLRREVFVEIDYTWLGKVENELRGRGIQTGETLFTDKVTLLCLPRNDE 181 V +EA I +VL REVFV++DYTW GKVENEL GRG + G T FTD+VT+ CLP E Sbjct: 121 VAGIEAAGEIVKVLHREVFVDVDYTWYGKVENELHGRGTRLGGTEFTDRVTVKCLPVASE 180 Query: 182 GDAFMAWITDLTQGQALVTEGRRLYYSEGE 211 DAF+AWITDLTQGQA++TEG LYY EGE Sbjct: 181 ADAFVAWITDLTQGQAVITEGEELYYIEGE 210 >C0Z746.1 C0Z746_BREBN Putative uncharacterized protein yvyE Length = 219 Score = 234 bits (598), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 117/205 (57%), Positives = 143/205 (69%) Query: 2 MLEQYRTVRSPGSREVVIRKSRFIGHVMPVETEEEAVQFIENIKKQHWNATHNCSAYMIG 61 ML QY+T+ G +VI +SRFIG+ V TEEEA FI IKK+HW+ATHNCSA++IG Sbjct: 1 MLTQYKTIAGYGEDYIVIERSRFIGYAQRVTTEEEATAFIAMIKKKHWDATHNCSAFVIG 60 Query: 62 ERDEIQRQSDDGEPSGTAGKPILEVIRSQNVKNVAIVVTRYFGGIMLGAGGLIRAYTDGA 121 E D+IQR SDDGEPSGTAGKPILE I+ VK+ +VVTRYFGGI LGAGGL+RAYT G Sbjct: 61 ENDQIQRSSDDGEPSGTAGKPILECIKKNGVKDTVVVVTRYFGGIKLGAGGLVRAYTAGT 120 Query: 122 VLALEAGEVITRVLRREVFVEIDYTWLGKVENELRGRGIQTGETLFTDKVTLLCLPRNDE 181 V AL+A +++ L + + V +DYTW GKVENELR + T FTDKVT L E Sbjct: 121 VTALKAAKIVVHTLHQMISVSVDYTWWGKVENELRLGEHRVSGTDFTDKVTAHVLIPEGE 180 Query: 182 GDAFMAWITDLTQGQALVTEGRRLY 206 D F+A + DLT GQA + G + Y Sbjct: 181 QDEFVARMVDLTNGQAQIVLGEKEY 205 >B4BNB8.1 B4BNB8_9BACI Putative uncharacterized protein Length = 213 Score = 231 bits (589), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 109/205 (53%), Positives = 145/205 (70%) Query: 2 MLEQYRTVRSPGSREVVIRKSRFIGHVMPVETEEEAVQFIENIKKQHWNATHNCSAYMIG 61 ML++Y TV+ G +E+VI KSRFI ++ ETEEEAV FI+ IKK+HW+ATHNCSAY+IG Sbjct: 1 MLQKYYTVKGYGEQEIVIEKSRFICYINRAETEEEAVAFIQQIKKKHWDATHNCSAYLIG 60 Query: 62 ERDEIQRQSDDGEPSGTAGKPILEVIRSQNVKNVAIVVTRYFGGIMLGAGGLIRAYTDGA 121 E D+IQ+ +DDGEPSGTAG P+LEV++ + +K+ VVTRYFGGI LGAGGL+RAY Sbjct: 61 EHDQIQKANDDGEPSGTAGVPMLEVLKKKGLKDTVAVVTRYFGGIKLGAGGLVRAYGRAV 120 Query: 122 VLALEAGEVITRVLRREVFVEIDYTWLGKVENELRGRGIQTGETLFTDKVTLLCLPRNDE 181 L A ++ R L R + V IDYTWLGKVENELR + ++D+VT+ + Sbjct: 121 TEGLNAAGIVERRLMRIMHVTIDYTWLGKVENELRSSNYKVKNIHYSDRVTIEIFVEETD 180 Query: 182 GDAFMAWITDLTQGQALVTEGRRLY 206 +F AWI DLT G++ ++EG + Y Sbjct: 181 KTSFAAWIEDLTNGRSTISEGEQTY 205 >A2RH67.1 A2RH67_BACME YvyE protein Length = 211 Score = 227 bits (578), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 110/208 (52%), Positives = 139/208 (66%) Query: 2 MLEQYRTVRSPGSREVVIRKSRFIGHVMPVETEEEAVQFIENIKKQHWNATHNCSAYMIG 61 ML QY TV+ GS E+ I+KSRFI H+ V TEEEA QFI++IKKQHWNATHNCSAY+IG Sbjct: 1 MLSQYYTVKQEGSHEITIQKSRFICHMKRVTTEEEAQQFIQDIKKQHWNATHNCSAYLIG 60 Query: 62 ERDEIQRQSDDGEPSGTAGKPILEVIRSQNVKNVAIVVTRYFGGIMLGAGGLIRAYTDGA 121 ERD+ Q+ +DDGEPSGTAG P+LEV++ + +K+ +VVTRYFGGI LGAGGL+RAY Sbjct: 61 ERDQFQKANDDGEPSGTAGVPMLEVLKKRGLKDTVVVVTRYFGGIKLGAGGLVRAYGKSV 120 Query: 122 VLALEAGEVITRVLRREVFVEIDYTWLGKVENELRGRGIQTGETLFTDKVTLLCLPRNDE 181 AL + R L + +DYTWLGK+ENELR E + D V + + Sbjct: 121 SEALNELGTVKRTLMAVMHTTVDYTWLGKLENELRSSVYLLKEIHYADMVEIETFVEEAQ 180 Query: 182 GDAFMAWITDLTQGQALVTEGRRLYYSE 209 +AF W+T+LT GQA + G Y E Sbjct: 181 TEAFTEWMTELTNGQADIRAGETTYLEE 208 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,266,551,538 Number of extensions: 51879838 Number of successful extensions: 124300 Number of sequences better than 1.0e-05: 1147 Number of HSP's gapped: 123561 Number of HSP's successfully gapped: 1147 Length of query: 211 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 81 Effective length of database: 1,835,964,253 Effective search space: 148713104493 Effective search space used: 148713104493 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)