BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0030.p (193 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAV1.1 B3KAV1_9BACI Regulatory protein TetR 305 2e-81 C3BT62.1 C3BT62_9BACI Transcriptional regulator, TetR 160 4e-38 C3BB37.1 C3BB37_BACMY Transcriptional regulator, TetR 160 6e-38 C3ATR1.1 C3ATR1_BACMY Transcriptional regulator, TetR 160 6e-38 C2Y2E1.1 C2Y2E1_BACCE Transcriptional regulator, TetR 157 6e-37 >B3KAV1.1 B3KAV1_9BACI Regulatory protein TetR Length = 197 Score = 305 bits (780), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 142/193 (73%), Positives = 172/193 (89%) Query: 1 MARRAVEQELSRERILEAARHLFITKGYRAISMRSIGQHLGYSHGSLYYHFKEKAELFYA 60 MARRAVE+ELSRERILEAARHLFITKGYRAISMRSIGQHLGYSHGSLYYHFKEKAELFYA Sbjct: 1 MARRAVERELSRERILEAARHLFITKGYRAISMRSIGQHLGYSHGSLYYHFKEKAELFYA 60 Query: 61 IVVEDFNHVATLLNQVMHTPPEPGMTRVEQLILEFIRFGLDHPYQYEIMFMIRDEELLAY 120 IV++DFN + LL +V PP G++++EQL+LEF+RFGLD+PYQYEIMFMIRDEELL+Y Sbjct: 61 IVMKDFNDLNDLLLEVSVKPPCDGVSKLEQLMLEFVRFGLDNPYQYEIMFMIRDEELLSY 120 Query: 121 CRAEQGRCFELFASIVRSHMKEEGYVSEDWQSIPLTLFLSAHGFISYYIQDKVSFEDVRQ 180 CR+EQGRCFE+FA +VR ++ EE Y E+ +++PLTLFLS HGFISYYIQD++ F++++ Sbjct: 121 CRSEQGRCFEMFAMLVRQYLLEENYSEEERRTVPLTLFLSLHGFISYYIQDRIGFDEIKP 180 Query: 181 AAVMHVKVLSRSL 193 AA+ H+KVL RSL Sbjct: 181 AALTHIKVLCRSL 193 >C3BT62.1 C3BT62_9BACI Transcriptional regulator, TetR Length = 190 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 122/194 (62%), Gaps = 12/194 (6%) Query: 3 RRAVEQELSRERILEAARHLFITKGYRAISMRSIGQHLGYSHGSLYYHFKEKAELFYAIV 62 RRAV+QEL+RE I+ AAR LFI +GY+ SMR I LGYSHGS+YYHFK KAELFYA+V Sbjct: 4 RRAVKQELTREMIMNAARDLFIKQGYQHTSMRKIAAELGYSHGSIYYHFKNKAELFYAMV 63 Query: 63 VEDFNHVATLLNQVMHTPPEPGMTRVEQL---ILEFIRFGLDHPYQYEIMFMIRDEELLA 119 +DF LL+Q + + R EQL +L FI FGL + YEIMF+I+DEEL Sbjct: 64 EQDFQ----LLDQRLDETIAQNLQREEQLKAVLLGFIEFGLRNQSHYEIMFLIKDEELKE 119 Query: 120 YCRAEQGRCFELFASIVRSHMKEEGYVSEDWQSIPLTLFLSAHGFISYYIQDKVSFEDVR 179 E ++ FA+++ S + + W ++FLS HGF+S+Y ++ +FEDV+ Sbjct: 120 CLADEPNASYDKFANVISSLCNGKVSIMTIW-----SVFLSLHGFVSHYCRNVQTFEDVQ 174 Query: 180 QAAVMHVKVLSRSL 193 A HV +++SL Sbjct: 175 DLAKAHVNFIAKSL 188 >C3BB37.1 C3BB37_BACMY Transcriptional regulator, TetR Length = 190 Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 88/194 (45%), Positives = 122/194 (62%), Gaps = 12/194 (6%) Query: 3 RRAVEQELSRERILEAARHLFITKGYRAISMRSIGQHLGYSHGSLYYHFKEKAELFYAIV 62 RRAV+QEL+RE I+ AAR LFI +GY+ SMR I LGYSHGS+YYHFK KAELFYA++ Sbjct: 4 RRAVKQELTREMIMNAARDLFIKQGYQHTSMRKIAAELGYSHGSIYYHFKNKAELFYAMI 63 Query: 63 VEDFNHVATLLNQVMHTPPEPGMTRVEQL---ILEFIRFGLDHPYQYEIMFMIRDEELLA 119 +DF LL+Q + + R EQL +L FI FGL + YEIMF+I+DEEL Sbjct: 64 EQDFQ----LLDQRLDETIAQNLQREEQLKAVLLGFIEFGLRNQSHYEIMFLIKDEELKE 119 Query: 120 YCRAEQGRCFELFASIVRSHMKEEGYVSEDWQSIPLTLFLSAHGFISYYIQDKVSFEDVR 179 E ++ FA+++ S + + W ++FLS HGF+S+Y ++ +FEDV+ Sbjct: 120 CLADEPNASYDKFANVISSLCNGKVSIMTIW-----SVFLSLHGFVSHYCRNVQTFEDVQ 174 Query: 180 QAAVMHVKVLSRSL 193 A HV +++SL Sbjct: 175 DLAKAHVNFIAKSL 188 >C3ATR1.1 C3ATR1_BACMY Transcriptional regulator, TetR Length = 190 Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 88/194 (45%), Positives = 122/194 (62%), Gaps = 12/194 (6%) Query: 3 RRAVEQELSRERILEAARHLFITKGYRAISMRSIGQHLGYSHGSLYYHFKEKAELFYAIV 62 RRAV+QEL+RE I+ AAR LFI +GY+ SMR I LGYSHGS+YYHFK KAELFYA++ Sbjct: 4 RRAVKQELTREMIMNAARDLFIKQGYQHTSMRKIAAELGYSHGSIYYHFKNKAELFYAMI 63 Query: 63 VEDFNHVATLLNQVMHTPPEPGMTRVEQL---ILEFIRFGLDHPYQYEIMFMIRDEELLA 119 +DF LL+Q + + R EQL +L FI FGL + YEIMF+I+DEEL Sbjct: 64 EQDFQ----LLDQRLDETIAQNLQREEQLKAVLLGFIEFGLRNQSHYEIMFLIKDEELKE 119 Query: 120 YCRAEQGRCFELFASIVRSHMKEEGYVSEDWQSIPLTLFLSAHGFISYYIQDKVSFEDVR 179 E ++ FA+++ S + + W ++FLS HGF+S+Y ++ +FEDV+ Sbjct: 120 CLADEPNASYDKFANVISSLCNGKVSIMTIW-----SVFLSLHGFVSHYCRNVQTFEDVQ 174 Query: 180 QAAVMHVKVLSRSL 193 A HV +++SL Sbjct: 175 DLAKAHVNFIAKSL 188 >C2Y2E1.1 C2Y2E1_BACCE Transcriptional regulator, TetR Length = 190 Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 88/194 (45%), Positives = 121/194 (62%), Gaps = 12/194 (6%) Query: 3 RRAVEQELSRERILEAARHLFITKGYRAISMRSIGQHLGYSHGSLYYHFKEKAELFYAIV 62 RRAV+QEL+RE I+ AR LFI GY+ SMR I LGYSHG++YYHFK KAELFYA+V Sbjct: 4 RRAVKQELTREMIMNVARDLFIKLGYQHTSMRKIATELGYSHGAIYYHFKNKAELFYAMV 63 Query: 63 VEDFNHVATLLNQVMHTPPEPGMTRVEQL---ILEFIRFGLDHPYQYEIMFMIRDEELLA 119 +DF LLNQ + + + + EQL + FI FGL + YEIMF+IRD+EL Sbjct: 64 EQDFQ----LLNQKLDEINDQNLPQEEQLKAVLFGFIEFGLQNQSHYEIMFLIRDDELKE 119 Query: 120 YCRAEQGRCFELFASIVRSHMKEEGYVSEDWQSIPLTLFLSAHGFISYYIQDKVSFEDVR 179 +E FA++V S E+ V W ++FLS HGF+++Y + +FE+V+ Sbjct: 120 CLADGPNVSYEKFATVVSSLCNEKVNVMTIW-----SVFLSLHGFVAHYCGNGQTFEEVK 174 Query: 180 QAAVMHVKVLSRSL 193 A +HV+ +S+SL Sbjct: 175 GLAKVHVEFISKSL 188 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.139 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,057,569,468 Number of extensions: 39639778 Number of successful extensions: 140561 Number of sequences better than 1.0e-05: 415 Number of HSP's gapped: 140954 Number of HSP's successfully gapped: 415 Length of query: 193 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 65 Effective length of database: 1,854,806,283 Effective search space: 120562408395 Effective search space used: 120562408395 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 127 (53.5 bits)