BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0028.p (273 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAV3.1 B3KAV3_9BACI Sulfate ABC transporter, inner membrane su... 350 6e-95 B1DJJ3.1 B1DJJ3_9BACL Sulfate ABC transporter, inner membrane su... 318 4e-85 C0UPM5.1 C0UPM5_9ACTO Sulfate ABC transporter, permease protein ... 179 3e-43 C1A1H8.1 C1A1H8_RHOE4 Sulfate ABC transporter permease protein 166 3e-39 C3JRZ0.1 C3JRZ0_RHOER Sulfate ABC transporter, permease protein ... 166 3e-39 >B3KAV3.1 B3KAV3_9BACI Sulfate ABC transporter, inner membrane subunit Length = 271 Score = 350 bits (899), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 180/271 (66%), Positives = 205/271 (75%) Query: 3 LNTLLRHKGWTWGFRTTILLYFVVLIVLPILGVYYNSFSLGFSNFAESISDPIAWKSVLL 62 + T +RHKGWTWGFR+T+LLYF+ LIVLPI GVY SFS G+ +FAES+ DPIAWK+VLL Sbjct: 1 MTTWIRHKGWTWGFRSTVLLYFLALIVLPIFGVYVQSFSAGWGHFAESVMDPIAWKAVLL 60 Query: 63 TLKLAVMATVINVLLGTMIAWVLIRYQFPGKALLNSLVDLPFALPTAVXXXXXXXXXXXX 122 T+KL +++T INVL+GTMIAWVLIRY+FPG+ LLNSLVDLPFALPTAV Sbjct: 61 TIKLGLISTFINVLIGTMIAWVLIRYRFPGRTLLNSLVDLPFALPTAVGGLMILLLLGPG 120 Query: 123 XXXXXXAEALGFEIVFHQPAIVIAMVFVTFPFVIRAVQPXXXXXXXXXXXXXYTMGATRS 182 AE LGFEIVFHQPAIV+AM+FVTFPFVIRAVQP YTMGA+R+ Sbjct: 121 SLLGGLAEKLGFEIVFHQPAIVVAMLFVTFPFVIRAVQPLLEELDPLEEEAAYTMGASRT 180 Query: 183 RVFRQVILPSMAPGMIGGGMLAFSRALAEFGAVVLVAGNIPGRTLVSSVFIFGEVESDNP 242 R F +VILPSM PG+I GGMLAFSRALAEFGAVVLVAGNIPGRTL++SVFIFGEVESDNP Sbjct: 181 RTFFKVILPSMLPGIISGGMLAFSRALAEFGAVVLVAGNIPGRTLIASVFIFGEVESDNP 240 Query: 243 VGAAAVSVXXXXXXXXXXXXXXXXQMRGRRA 273 GAAAVS+ Q RGRRA Sbjct: 241 AGAAAVSILLLTLSFIILWVINAVQQRGRRA 271 >B1DJJ3.1 B1DJJ3_9BACL Sulfate ABC transporter, inner membrane subunit Length = 271 Score = 318 bits (814), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 163/248 (65%), Positives = 191/248 (77%) Query: 3 LNTLLRHKGWTWGFRTTILLYFVVLIVLPILGVYYNSFSLGFSNFAESISDPIAWKSVLL 62 +N + R K W++GFR+ I+LYF+VLIVLPI+G+Y S S GF F ESISDP+AWK+VLL Sbjct: 1 MNVMFRSKWWSFGFRSAIMLYFIVLIVLPIIGIYTQSVSRGFVPFWESISDPLAWKAVLL 60 Query: 63 TLKLAVMATVINVLLGTMIAWVLIRYQFPGKALLNSLVDLPFALPTAVXXXXXXXXXXXX 122 T+KLA++ATVINVLLG+MI WVLIRY+FPG+ +LNSLVDLPFALPTAV Sbjct: 61 TIKLALIATVINVLLGSMIGWVLIRYRFPGRRILNSLVDLPFALPTAVTGLMILLLLGPG 120 Query: 123 XXXXXXAEALGFEIVFHQPAIVIAMVFVTFPFVIRAVQPXXXXXXXXXXXXXYTMGATRS 182 A +GF IVFHQPAIVIAMVFVTFPFVIRAVQP YTMGA++ Sbjct: 121 SFVGELASKMGFTIVFHQPAIVIAMVFVTFPFVIRAVQPLLEEIDKSEEEAAYTMGASKF 180 Query: 183 RVFRQVILPSMAPGMIGGGMLAFSRALAEFGAVVLVAGNIPGRTLVSSVFIFGEVESDNP 242 R F VI PSM PG+I G MLAFSRALAEFGAVVLVAGNIPG+TL+++V+IFGE+ESDNP Sbjct: 181 RTFFSVIYPSMLPGVISGAMLAFSRALAEFGAVVLVAGNIPGKTLIAAVYIFGEIESDNP 240 Query: 243 VGAAAVSV 250 GAAAVSV Sbjct: 241 QGAAAVSV 248 >C0UPM5.1 C0UPM5_9ACTO Sulfate ABC transporter, permease protein CysT Length = 290 Score = 179 bits (453), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 94/229 (41%), Positives = 141/229 (61%), Gaps = 7/229 (3%) Query: 22 LYFVVLIVLPILGVYYNSFSLGFSNFAESISDPIAWKSVLLTLKLAVMATVINVLLGTMI 81 L+ V+++LP+ + SF G+S F ++++DP A S+ +T+ ++++ VINVL GT+I Sbjct: 41 LWLTVIVLLPLAAITVQSFGDGWSGFWDAVTDPAALDSLRITVLVSLLVAVINVLFGTLI 100 Query: 82 AWVLIRYQFPGKALLNSLVDLPFALPTAVXXXXXXXXXXXXXXXXXXAEALGFEIVFHQP 141 AWVL+R +FPGK +N+++DLPFALPT V + + QP Sbjct: 101 AWVLVRDEFPGKGFVNAIIDLPFALPTIVASLVLLSLYGPN-------SPIDIRLNATQP 153 Query: 142 AIVIAMVFVTFPFVIRAVQPXXXXXXXXXXXXXYTMGATRSRVFRQVILPSMAPGMIGGG 201 A+VIA+ FVT PFV+R VQP +GA+ F +++LP++ P ++ G Sbjct: 154 ALVIALTFVTLPFVVRQVQPVLLELDRDVEEAAAVLGASNWVTFTKIVLPALLPAILTGA 213 Query: 202 MLAFSRALAEFGAVVLVAGNIPGRTLVSSVFIFGEVESDNPVGAAAVSV 250 LAF+RA+ EFG+VVL+ GNIPG T V+S +I ++E D PV AAAVSV Sbjct: 214 GLAFTRAIGEFGSVVLIGGNIPGETQVASQYIQQQIEVDQPVNAAAVSV 262 >C1A1H8.1 C1A1H8_RHOE4 Sulfate ABC transporter permease protein Length = 282 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 136/221 (61%), Gaps = 7/221 (3%) Query: 22 LYFVVLIVLPILGVYYNSFSLGFSNFAESISDPIAWKSVLLTLKLAVMATVINVLLGTMI 81 L+ V+++LP+ + +F G S F ++I+ P+A S+ +TL ++V+ +INV++GT+I Sbjct: 33 LWLSVIVLLPLAALTATAFDEGISGFWDAITAPVALASLRVTLLVSVIVALINVVMGTII 92 Query: 82 AWVLIRYQFPGKALLNSLVDLPFALPTAVXXXXXXXXXXXXXXXXXXAEALGFEIVFHQP 141 AWVL+R FPGK ++NS++DLPFALPT V + + QP Sbjct: 93 AWVLVRDDFPGKRIVNSMIDLPFALPTIV-------ASIVLLSLYGPQSPIDIHLNATQP 145 Query: 142 AIVIAMVFVTFPFVIRAVQPXXXXXXXXXXXXXYTMGATRSRVFRQVILPSMAPGMIGGG 201 +++A+ FVT PFV+R+VQP ++GA+ +FR V+LP++AP +I G Sbjct: 146 GLIVALAFVTLPFVVRSVQPVLMEVDREVEEAAASLGASNWTIFRSVVLPTLAPAVISGA 205 Query: 202 MLAFSRALAEFGAVVLVAGNIPGRTLVSSVFIFGEVESDNP 242 LAF+RA+ E+G+VVL+ GNIP T ++S +I ++E D P Sbjct: 206 GLAFARAIGEYGSVVLIGGNIPRVTQMTSQYIQQQIEIDRP 246 >C3JRZ0.1 C3JRZ0_RHOER Sulfate ABC transporter, permease protein CysT Length = 282 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 136/221 (61%), Gaps = 7/221 (3%) Query: 22 LYFVVLIVLPILGVYYNSFSLGFSNFAESISDPIAWKSVLLTLKLAVMATVINVLLGTMI 81 L+ V+++LP+ + +F G S F ++I+ P+A S+ +TL ++V+ +INV++GT+I Sbjct: 33 LWLSVIVLLPLAALTATAFDEGISGFWDAITAPVALASLRVTLLVSVIVALINVVMGTII 92 Query: 82 AWVLIRYQFPGKALLNSLVDLPFALPTAVXXXXXXXXXXXXXXXXXXAEALGFEIVFHQP 141 AWVL+R FPGK ++NS++DLPFALPT V + + QP Sbjct: 93 AWVLVRDDFPGKRIVNSMIDLPFALPTIV-------ASIVLLSLYGPQSPIDIHLNATQP 145 Query: 142 AIVIAMVFVTFPFVIRAVQPXXXXXXXXXXXXXYTMGATRSRVFRQVILPSMAPGMIGGG 201 +++A+ FVT PFV+R+VQP ++GA+ +FR V+LP++AP +I G Sbjct: 146 GLIVALAFVTLPFVVRSVQPVLMEVDREVEEAAASLGASNWTIFRSVVLPTLAPAVISGA 205 Query: 202 MLAFSRALAEFGAVVLVAGNIPGRTLVSSVFIFGEVESDNP 242 LAF+RA+ E+G+VVL+ GNIP T ++S +I ++E D P Sbjct: 206 GLAFARAIGEYGSVVLIGGNIPRVTQMTSQYIQQQIEIDRP 246 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.142 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,212,891,278 Number of extensions: 39799729 Number of successful extensions: 202021 Number of sequences better than 1.0e-05: 3771 Number of HSP's gapped: 199909 Number of HSP's successfully gapped: 3801 Length of query: 273 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 139 Effective length of database: 1,798,280,193 Effective search space: 249960946827 Effective search space used: 249960946827 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)