BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0021.p (151 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4VF90.1 C4VF90_ENTFA S-ribosylhomocysteinase LuxS EC=4.4.1.21 230 3e-59 C2JJ20.1 C2JJ20_ENTFA S-ribosylhomocysteine lyase EC=4.4.1.21 230 3e-59 C2H5V3.1 C2H5V3_ENTFA S-ribosylhomocysteine lyase EC=4.4.1.21 230 3e-59 C2DDP7.1 C2DDP7_ENTFA S-ribosylhomocysteine lyase EC=4.4.1.21 230 3e-59 Q836D3.1 LUXS_ENTFA S-ribosylhomocysteine lyase EC=4.4.1.21 230 3e-59 >C4VF90.1 C4VF90_ENTFA S-ribosylhomocysteinase LuxS EC=4.4.1.21 Length = 152 Score = 230 bits (586), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 107/149 (71%), Positives = 127/149 (85%), Gaps = 1/149 (0%) Query: 1 MAKVESFQLDHTKVKAPYVRVAGTEKNEKGSTVQKYDLRLLQPNADALPTAAVHTLEHLL 60 MA+VESF+LDH VKAPYVR+AGTE+N + V+KYDLR LQPN DALPT A+HTLEHLL Sbjct: 1 MARVESFELDHNTVKAPYVRLAGTEQN-GDALVEKYDLRFLQPNKDALPTGALHTLEHLL 59 Query: 61 ATYLRDELEGIIDISPMGCRTGFYLIIWDEHEPADVAAALTKVLHKVLETEHVPAVSALE 120 A +RDEL+GIIDISPMGCRTGFY+I+WD+H P ++ AL VL+KV+ TE VPAVSA E Sbjct: 60 AVNMRDELKGIIDISPMGCRTGFYMIMWDQHSPQEIRDALVNVLNKVINTEVVPAVSAKE 119 Query: 121 CGNYKDHSLFSAKEYARLVLEAGISDDPF 149 CGNYKDHSLF+AKEYA++VL+ GIS DPF Sbjct: 120 CGNYKDHSLFAAKEYAKIVLDQGISLDPF 148 >C2JJ20.1 C2JJ20_ENTFA S-ribosylhomocysteine lyase EC=4.4.1.21 Length = 152 Score = 230 bits (586), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 107/149 (71%), Positives = 127/149 (85%), Gaps = 1/149 (0%) Query: 1 MAKVESFQLDHTKVKAPYVRVAGTEKNEKGSTVQKYDLRLLQPNADALPTAAVHTLEHLL 60 MA+VESF+LDH VKAPYVR+AGTE+N + V+KYDLR LQPN DALPT A+HTLEHLL Sbjct: 1 MARVESFELDHNTVKAPYVRLAGTEQN-GDALVEKYDLRFLQPNKDALPTGALHTLEHLL 59 Query: 61 ATYLRDELEGIIDISPMGCRTGFYLIIWDEHEPADVAAALTKVLHKVLETEHVPAVSALE 120 A +RDEL+GIIDISPMGCRTGFY+I+WD+H P ++ AL VL+KV+ TE VPAVSA E Sbjct: 60 AVNMRDELKGIIDISPMGCRTGFYMIMWDQHSPQEIRDALVNVLNKVINTEVVPAVSAKE 119 Query: 121 CGNYKDHSLFSAKEYARLVLEAGISDDPF 149 CGNYKDHSLF+AKEYA++VL+ GIS DPF Sbjct: 120 CGNYKDHSLFAAKEYAKIVLDQGISLDPF 148 >C2H5V3.1 C2H5V3_ENTFA S-ribosylhomocysteine lyase EC=4.4.1.21 Length = 152 Score = 230 bits (586), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 107/149 (71%), Positives = 127/149 (85%), Gaps = 1/149 (0%) Query: 1 MAKVESFQLDHTKVKAPYVRVAGTEKNEKGSTVQKYDLRLLQPNADALPTAAVHTLEHLL 60 MA+VESF+LDH VKAPYVR+AGTE+N + V+KYDLR LQPN DALPT A+HTLEHLL Sbjct: 1 MARVESFELDHNTVKAPYVRLAGTEQN-GDALVEKYDLRFLQPNKDALPTGALHTLEHLL 59 Query: 61 ATYLRDELEGIIDISPMGCRTGFYLIIWDEHEPADVAAALTKVLHKVLETEHVPAVSALE 120 A +RDEL+GIIDISPMGCRTGFY+I+WD+H P ++ AL VL+KV+ TE VPAVSA E Sbjct: 60 AVNMRDELKGIIDISPMGCRTGFYMIMWDQHSPQEIRDALVNVLNKVINTEVVPAVSAKE 119 Query: 121 CGNYKDHSLFSAKEYARLVLEAGISDDPF 149 CGNYKDHSLF+AKEYA++VL+ GIS DPF Sbjct: 120 CGNYKDHSLFAAKEYAKIVLDQGISLDPF 148 >C2DDP7.1 C2DDP7_ENTFA S-ribosylhomocysteine lyase EC=4.4.1.21 Length = 152 Score = 230 bits (586), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 107/149 (71%), Positives = 127/149 (85%), Gaps = 1/149 (0%) Query: 1 MAKVESFQLDHTKVKAPYVRVAGTEKNEKGSTVQKYDLRLLQPNADALPTAAVHTLEHLL 60 MA+VESF+LDH VKAPYVR+AGTE+N + V+KYDLR LQPN DALPT A+HTLEHLL Sbjct: 1 MARVESFELDHNTVKAPYVRLAGTEQN-GDALVEKYDLRFLQPNKDALPTGALHTLEHLL 59 Query: 61 ATYLRDELEGIIDISPMGCRTGFYLIIWDEHEPADVAAALTKVLHKVLETEHVPAVSALE 120 A +RDEL+GIIDISPMGCRTGFY+I+WD+H P ++ AL VL+KV+ TE VPAVSA E Sbjct: 60 AVNMRDELKGIIDISPMGCRTGFYMIMWDQHSPQEIRDALVNVLNKVINTEVVPAVSAKE 119 Query: 121 CGNYKDHSLFSAKEYARLVLEAGISDDPF 149 CGNYKDHSLF+AKEYA++VL+ GIS DPF Sbjct: 120 CGNYKDHSLFAAKEYAKIVLDQGISLDPF 148 >Q836D3.1 LUXS_ENTFA S-ribosylhomocysteine lyase EC=4.4.1.21 Length = 152 Score = 230 bits (586), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 107/149 (71%), Positives = 127/149 (85%), Gaps = 1/149 (0%) Query: 1 MAKVESFQLDHTKVKAPYVRVAGTEKNEKGSTVQKYDLRLLQPNADALPTAAVHTLEHLL 60 MA+VESF+LDH VKAPYVR+AGTE+N + V+KYDLR LQPN DALPT A+HTLEHLL Sbjct: 1 MARVESFELDHNTVKAPYVRLAGTEQN-GDALVEKYDLRFLQPNKDALPTGALHTLEHLL 59 Query: 61 ATYLRDELEGIIDISPMGCRTGFYLIIWDEHEPADVAAALTKVLHKVLETEHVPAVSALE 120 A +RDEL+GIIDISPMGCRTGFY+I+WD+H P ++ AL VL+KV+ TE VPAVSA E Sbjct: 60 AVNMRDELKGIIDISPMGCRTGFYMIMWDQHSPQEIRDALVNVLNKVINTEVVPAVSAKE 119 Query: 121 CGNYKDHSLFSAKEYARLVLEAGISDDPF 149 CGNYKDHSLF+AKEYA++VL+ GIS DPF Sbjct: 120 CGNYKDHSLFAAKEYAKIVLDQGISLDPF 148 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 882,809,098 Number of extensions: 33755007 Number of successful extensions: 79013 Number of sequences better than 1.0e-05: 754 Number of HSP's gapped: 77914 Number of HSP's successfully gapped: 754 Length of query: 151 Length of database: 3,060,696,203 Length adjustment: 113 Effective length of query: 38 Effective length of database: 1,996,121,508 Effective search space: 75852617304 Effective search space used: 75852617304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)