BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0020.p (283 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4U324.1 C4U324_YERKR Possible component of an ABC transporter s... 301 4e-80 C4SM70.1 C4SM70_YERFR Possible component of an ABC transporter s... 300 1e-79 C4SE97.1 C4SE97_YERMO Possible component of an ABC transporter s... 298 3e-79 C4RXH2.1 C4RXH2_YERBE Possible component of an ABC transporter s... 298 4e-79 A1JT89.1 A1JT89_YERE8 Possible component of an ABC transporter s... 297 9e-79 >C4U324.1 C4U324_YERKR Possible component of an ABC transporter system Length = 270 Score = 301 bits (771), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 147/249 (59%), Positives = 180/249 (72%) Query: 34 DSSAQEKKTLKISFNPGPYSDQFKNGVAPYLEKKGYTITYKEFTDGIQPNVAVANGEIDA 93 ++ ++EKK +K+ FNPGPY +QF+ GVAPYL KGY I YK+F DGIQ N AV+ GEID Sbjct: 21 NAHSEEKKVIKLGFNPGPYKEQFEKGVAPYLISKGYKIEYKDFNDGIQVNNAVSTGEIDG 80 Query: 94 NVFQHSLYLQSINEREKIDLVGVVQVPTPPMGLYSKKHNSLDEVKDGDQVNLPNEPVNML 153 N+ QH +YLQ+IN+R +ID G+VQVPTPPMGLYS KHN D+ KDG +++PN+P N Sbjct: 81 NIMQHPVYLQAINDRLRIDNTGIVQVPTPPMGLYSNKHNKEDKPKDGAWISVPNQPSNEY 140 Query: 154 RALNVLKDVGWITLKDNIDPLQTSLADVTSNPHNLKFIATEPAQGPRALEDVDYAAIQGN 213 RA +L+ +GWI LK+ IDP S D+ NP++L + AQ RAL DVDY AIQGN Sbjct: 141 RAALLLQSIGWIKLKEKIDPATFSQKDIAENPYHLVIKEMDNAQQVRALPDVDYGAIQGN 200 Query: 214 FAVSNNIKLTTALQLEKMTDPFTNIVAVDSKNKDAQFVKDIIEGYHSDEFQKYIKSNPDY 273 FAVSN IKLT+ALQLEK T F N+V V KNKDA+F KDII GYHS EF+KYI N Y Sbjct: 201 FAVSNGIKLTSALQLEKPTSQFVNVVTVAGKNKDAEFAKDIIAGYHSPEFKKYILDNEKY 260 Query: 274 EGYKLPAYF 282 GY LP Y Sbjct: 261 TGYMLPDYL 269 >C4SM70.1 C4SM70_YERFR Possible component of an ABC transporter system Length = 270 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 146/249 (58%), Positives = 180/249 (72%) Query: 34 DSSAQEKKTLKISFNPGPYSDQFKNGVAPYLEKKGYTITYKEFTDGIQPNVAVANGEIDA 93 ++ ++EKKT+K+ FNPGPY +QF+ GVAPYL KKGY+I YK+F DGIQ N AV+ GEID Sbjct: 21 NAHSEEKKTIKLGFNPGPYKEQFEKGVAPYLIKKGYSIEYKDFNDGIQVNNAVSTGEIDG 80 Query: 94 NVFQHSLYLQSINEREKIDLVGVVQVPTPPMGLYSKKHNSLDEVKDGDQVNLPNEPVNML 153 N+ QH +YLQ+IN+R ID G+VQVPTPPMGLYS KH D+ K+G +++PN+P N Sbjct: 81 NIMQHPIYLQAINDRLHIDNAGIVQVPTPPMGLYSDKHQKEDKPKEGAWISVPNQPSNEY 140 Query: 154 RALNVLKDVGWITLKDNIDPLQTSLADVTSNPHNLKFIATEPAQGPRALEDVDYAAIQGN 213 RA +L+ +GWI LKD IDP S D+ NPH+L + AQ RAL DVD+ AIQGN Sbjct: 141 RAALLLQSIGWIKLKDKIDPATFSQKDIAENPHHLVIKEMDNAQQVRALPDVDFGAIQGN 200 Query: 214 FAVSNNIKLTTALQLEKMTDPFTNIVAVDSKNKDAQFVKDIIEGYHSDEFQKYIKSNPDY 273 FAVSN IKLT+ALQLEK T F N+V V KNK+ +F KDII GYHS EF+KYI N Y Sbjct: 201 FAVSNGIKLTSALQLEKPTTQFVNVVTVAGKNKNTEFAKDIIAGYHSPEFKKYILENEKY 260 Query: 274 EGYKLPAYF 282 GY LP Y Sbjct: 261 AGYMLPDYL 269 >C4SE97.1 C4SE97_YERMO Possible component of an ABC transporter system Length = 271 Score = 298 bits (764), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 145/249 (58%), Positives = 179/249 (71%) Query: 34 DSSAQEKKTLKISFNPGPYSDQFKNGVAPYLEKKGYTITYKEFTDGIQPNVAVANGEIDA 93 ++ ++EKK +K+ FNPGPY +QF+ GVAPYL KKGY I YK+F DGIQ N AV+ GEID Sbjct: 22 NAHSEEKKLIKLGFNPGPYKEQFEKGVAPYLIKKGYRIEYKDFNDGIQVNNAVSTGEIDG 81 Query: 94 NVFQHSLYLQSINEREKIDLVGVVQVPTPPMGLYSKKHNSLDEVKDGDQVNLPNEPVNML 153 N+ QH +YLQ+INER +ID G+VQVPTPPMGLYS KH D+ KDG +++PN+P N Sbjct: 82 NIMQHPIYLQAINERLRIDNTGIVQVPTPPMGLYSNKHQKEDKPKDGAWISVPNQPSNEY 141 Query: 154 RALNVLKDVGWITLKDNIDPLQTSLADVTSNPHNLKFIATEPAQGPRALEDVDYAAIQGN 213 RA +L+ +GWI LK IDP S D+ NP++L + AQ RAL DVD+ AIQGN Sbjct: 142 RAALLLQSIGWIKLKAKIDPATFSQKDIAENPYHLVIKEMDNAQQVRALPDVDFGAIQGN 201 Query: 214 FAVSNNIKLTTALQLEKMTDPFTNIVAVDSKNKDAQFVKDIIEGYHSDEFQKYIKSNPDY 273 FAVSN IKLT+ALQLEK T F N+V V KN+DA+F KDII GYHS EF+KYI + Y Sbjct: 202 FAVSNGIKLTSALQLEKSTTQFVNVVTVAGKNRDAEFAKDIIAGYHSPEFKKYILEDEKY 261 Query: 274 EGYKLPAYF 282 GY LP Y Sbjct: 262 TGYMLPDYL 270 >C4RXH2.1 C4RXH2_YERBE Possible component of an ABC transporter system Length = 271 Score = 298 bits (762), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 144/249 (57%), Positives = 181/249 (72%) Query: 34 DSSAQEKKTLKISFNPGPYSDQFKNGVAPYLEKKGYTITYKEFTDGIQPNVAVANGEIDA 93 ++ ++E++ +K+ FNPGPY +QF+ GVAPYL KKGY+I YK+F DGIQ N AV+ GEID Sbjct: 22 NAHSEEQRLIKLGFNPGPYKEQFEKGVAPYLIKKGYSIEYKDFNDGIQVNNAVSTGEIDG 81 Query: 94 NVFQHSLYLQSINEREKIDLVGVVQVPTPPMGLYSKKHNSLDEVKDGDQVNLPNEPVNML 153 N+ QH +YLQ+IN+R +ID G+VQVPTPPMGLYS KH D+ KDG +++PN+P N Sbjct: 82 NIMQHPIYLQAINDRLRIDNTGIVQVPTPPMGLYSNKHQKEDKPKDGAWISVPNQPSNEY 141 Query: 154 RALNVLKDVGWITLKDNIDPLQTSLADVTSNPHNLKFIATEPAQGPRALEDVDYAAIQGN 213 RA +L+ +GWI LK+ IDP S D+ NP++L + AQ RAL DVD+ AIQGN Sbjct: 142 RAALLLQSIGWIKLKEKIDPATFSQKDIAENPYHLVIKEMDNAQQVRALPDVDFGAIQGN 201 Query: 214 FAVSNNIKLTTALQLEKMTDPFTNIVAVDSKNKDAQFVKDIIEGYHSDEFQKYIKSNPDY 273 FAVSN IKLT+ALQLEK T F N+V V KNKDA+F KDII GYHS EF+KYI N Y Sbjct: 202 FAVSNGIKLTSALQLEKPTTQFVNVVTVAGKNKDAEFAKDIIAGYHSPEFKKYILENEKY 261 Query: 274 EGYKLPAYF 282 GY LP Y Sbjct: 262 TGYMLPDYL 270 >A1JT89.1 A1JT89_YERE8 Possible component of an ABC transporter system Length = 271 Score = 297 bits (760), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 144/249 (57%), Positives = 178/249 (71%) Query: 34 DSSAQEKKTLKISFNPGPYSDQFKNGVAPYLEKKGYTITYKEFTDGIQPNVAVANGEIDA 93 ++ ++E K +K+ FNPGPY +QF+ GVAPYL KKGY++ YK+F DGIQ N AV+ GEID Sbjct: 22 NAHSEESKVIKLGFNPGPYKEQFEKGVAPYLIKKGYSVEYKDFNDGIQVNNAVSTGEIDG 81 Query: 94 NVFQHSLYLQSINEREKIDLVGVVQVPTPPMGLYSKKHNSLDEVKDGDQVNLPNEPVNML 153 N+ QH +YLQ+IN R +ID G+VQVPTPPMGLYS KH D+ KDG +++PN+P N Sbjct: 82 NIMQHPIYLQAINNRLRIDNTGIVQVPTPPMGLYSNKHKKEDKPKDGAWISVPNQPSNEY 141 Query: 154 RALNVLKDVGWITLKDNIDPLQTSLADVTSNPHNLKFIATEPAQGPRALEDVDYAAIQGN 213 RA +L+ +GWI LK+ IDP S D+ NP++L + AQ RAL DVDY AIQGN Sbjct: 142 RAALLLQSIGWIKLKEKIDPATFSQKDIAENPYHLVIKEMDNAQQVRALPDVDYGAIQGN 201 Query: 214 FAVSNNIKLTTALQLEKMTDPFTNIVAVDSKNKDAQFVKDIIEGYHSDEFQKYIKSNPDY 273 FAVSN IKLT+ALQLEK T F N+V V KNKDA+F KDII GYHS F+KYI N Y Sbjct: 202 FAVSNGIKLTSALQLEKPTTQFVNVVTVAGKNKDAEFAKDIIAGYHSPAFKKYILENEKY 261 Query: 274 EGYKLPAYF 282 GY LP Y Sbjct: 262 TGYMLPDYL 270 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.132 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,800,311,258 Number of extensions: 76475969 Number of successful extensions: 160123 Number of sequences better than 1.0e-05: 1946 Number of HSP's gapped: 156834 Number of HSP's successfully gapped: 1948 Length of query: 283 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 149 Effective length of database: 1,798,280,193 Effective search space: 267943748757 Effective search space used: 267943748757 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)