BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0017.p (219 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A1JT93.1 A1JT93_YERE8 Putative ABC transport permease component 232 2e-59 C4SM72.1 C4SM72_YERFR ABC-type metal ion transport system, perme... 231 4e-59 C4X7K9.1 C4X7K9_KLEPN Putative ABC transport system permease com... 226 1e-57 A6T875.1 A6T875_KLEP7 Putative binding-protein-dependent transpo... 226 1e-57 B5XRP4.1 B5XRP4_KLEP3 ABC transporter, permease protein 224 6e-57 >A1JT93.1 A1JT93_YERE8 Putative ABC transport permease component Length = 221 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 117/219 (53%), Positives = 147/219 (67%) Query: 1 MFDSVITSEQLFQALRETVVMVGVSLFFGAXXXXXXXXXXXXTRPGGVLENRFVFAVLNP 60 M ++ IT +Q QAL +T+VMV +SL G+ TRPGG+++NR + VLNP Sbjct: 2 MIETAITLDQFVQALHDTLVMVSISLVIGSLIGIPLGILLVVTRPGGLIKNRTFYNVLNP 61 Query: 61 VINIIRSLPFIILLVAIIPFTRLLVHTSIGTSAAIVPLVVYVAPYIARLVENSLLEVSPG 120 +INIIRSLPFIIL+VAIIP TRL+V+T+IGT AIVPL++++APYI RLVENSLL+V+PG Sbjct: 62 IINIIRSLPFIILMVAIIPLTRLIVNTTIGTPGAIVPLIIFIAPYIGRLVENSLLDVNPG 121 Query: 121 IMEAAEAMGATTFQVIWHFLLPEAFGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLAIS 180 I+EAA++MGAT Q IW+FLLPEA S DLAI+ Sbjct: 122 ILEAAKSMGATPLQAIWYFLLPEALSSLILALTTATIGLIGATAMAGTVGGGGIGDLAIT 181 Query: 181 YGYQRFDTFVMIVTVAILIIFVQGIQSAGNRLARKARRD 219 YGYQRFDTFV + T +LII VQ IQS GN A K RR+ Sbjct: 182 YGYQRFDTFVTVTTAIVLIITVQLIQSLGNLFASKIRRE 220 >C4SM72.1 C4SM72_YERFR ABC-type metal ion transport system, permease component Length = 219 Score = 231 bits (589), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 118/219 (53%), Positives = 146/219 (66%) Query: 1 MFDSVITSEQLFQALRETVVMVGVSLFFGAXXXXXXXXXXXXTRPGGVLENRFVFAVLNP 60 M ++ IT EQ QAL +T+VMV +SL G+ TRPGG++ NR + +LNP Sbjct: 1 MIETAITLEQFIQALHDTLVMVSISLVIGSLIGIPLGILLVVTRPGGLINNRVFYNILNP 60 Query: 61 VINIIRSLPFIILLVAIIPFTRLLVHTSIGTSAAIVPLVVYVAPYIARLVENSLLEVSPG 120 VINIIRSLPFIIL+VAIIP TRL+V+T+IGT AIVPL++++APYI RLVENSLL+V+PG Sbjct: 61 VINIIRSLPFIILMVAIIPLTRLIVNTTIGTPGAIVPLIIFIAPYIGRLVENSLLDVNPG 120 Query: 121 IMEAAEAMGATTFQVIWHFLLPEAFGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLAIS 180 I+EAA++MGAT Q I +FLLPEA S DLAI+ Sbjct: 121 ILEAAKSMGATPLQAIGYFLLPEALSSLILALTTATIGLIGATAMAGTVGGGGIGDLAIT 180 Query: 181 YGYQRFDTFVMIVTVAILIIFVQGIQSAGNRLARKARRD 219 YGYQRFDTFV + T +LII VQ IQS GN ARK RR+ Sbjct: 181 YGYQRFDTFVTVTTAIVLIITVQLIQSLGNLFARKTRRE 219 >C4X7K9.1 C4X7K9_KLEPN Putative ABC transport system permease component Length = 222 Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 114/219 (52%), Positives = 142/219 (64%) Query: 1 MFDSVITSEQLFQALRETVVMVGVSLFFGAXXXXXXXXXXXXTRPGGVLENRFVFAVLNP 60 + D+ IT +Q AL +T++MV VSL FGA RPGG++ N V LNP Sbjct: 4 LIDTAITGDQFLLALHDTLIMVAVSLGFGALIGVPLGILLVVCRPGGIVANPVVHQALNP 63 Query: 61 VINIIRSLPFIILLVAIIPFTRLLVHTSIGTSAAIVPLVVYVAPYIARLVENSLLEVSPG 120 +IN++RSLPFIILL+ I+PFTRLLV T+IGT+ AIVPL+V+VAPYIARLVE+SLLEV G Sbjct: 64 LINVLRSLPFIILLIVILPFTRLLVGTTIGTAGAIVPLIVFVAPYIARLVESSLLEVDEG 123 Query: 121 IMEAAEAMGATTFQVIWHFLLPEAFGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLAIS 180 I+EAA+AMGAT Q +WHF+LPEA S DLAI+ Sbjct: 124 ILEAADAMGATPLQTVWHFMLPEAAASLILALTTATIGLLGATAMAGTVGGGGIGDLAIT 183 Query: 181 YGYQRFDTFVMIVTVAILIIFVQGIQSAGNRLARKARRD 219 YGYQRFD F + T +LI+ VQ IQ+ G RLAR+ RRD Sbjct: 184 YGYQRFDAFATLTTALVLIVIVQLIQTLGTRLARRLRRD 222 >A6T875.1 A6T875_KLEP7 Putative binding-protein-dependent transport systems inner membrane component Length = 222 Score = 226 bits (575), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 114/219 (52%), Positives = 142/219 (64%) Query: 1 MFDSVITSEQLFQALRETVVMVGVSLFFGAXXXXXXXXXXXXTRPGGVLENRFVFAVLNP 60 + D+ IT +Q AL +T++MV VSL FGA RPGG++ N V LNP Sbjct: 4 LIDTAITGDQFLLALHDTLIMVAVSLGFGALIGVPLGIVLVVCRPGGIVANPVVHQALNP 63 Query: 61 VINIIRSLPFIILLVAIIPFTRLLVHTSIGTSAAIVPLVVYVAPYIARLVENSLLEVSPG 120 +IN++RSLPFIILL+ I+PFTRLLV T+IGT+ AIVPL+V+VAPYIARLVE+SLLEV G Sbjct: 64 LINVLRSLPFIILLIVILPFTRLLVGTTIGTAGAIVPLIVFVAPYIARLVESSLLEVDEG 123 Query: 121 IMEAAEAMGATTFQVIWHFLLPEAFGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLAIS 180 I+EAA+AMGAT Q +WHF+LPEA S DLAI+ Sbjct: 124 ILEAADAMGATPLQTVWHFMLPEAAASLILALTTATIGLLGATAMAGTVGGGGIGDLAIT 183 Query: 181 YGYQRFDTFVMIVTVAILIIFVQGIQSAGNRLARKARRD 219 YGYQRFD F + T +LI+ VQ IQ+ G RLAR+ RRD Sbjct: 184 YGYQRFDAFATLTTALVLIVIVQLIQTLGTRLARRLRRD 222 >B5XRP4.1 B5XRP4_KLEP3 ABC transporter, permease protein Length = 222 Score = 224 bits (570), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 113/219 (51%), Positives = 142/219 (64%) Query: 1 MFDSVITSEQLFQALRETVVMVGVSLFFGAXXXXXXXXXXXXTRPGGVLENRFVFAVLNP 60 + D+ IT +Q AL +T++MV VSL FGA RPGG++ N V LNP Sbjct: 4 LIDTAITGDQFLLALHDTLIMVAVSLGFGALIGVPLGIVLVVCRPGGIVANPVVHQALNP 63 Query: 61 VINIIRSLPFIILLVAIIPFTRLLVHTSIGTSAAIVPLVVYVAPYIARLVENSLLEVSPG 120 +IN++RSLPFIILL+ I+PFTRLLV T+IGT+ AIVPL+V+VAPYIARLVE+SLLEV G Sbjct: 64 LINVLRSLPFIILLIVILPFTRLLVGTTIGTAGAIVPLIVFVAPYIARLVESSLLEVDEG 123 Query: 121 IMEAAEAMGATTFQVIWHFLLPEAFGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLAIS 180 I+EAA+AMGAT Q +WHF+LPEA S DLAI+ Sbjct: 124 ILEAADAMGATPLQTVWHFMLPEAAASLILALTTATIGLLGATAMAGTVGGGGIGDLAIT 183 Query: 181 YGYQRFDTFVMIVTVAILIIFVQGIQSAGNRLARKARRD 219 YGYQRFD F + T +LI+ VQ IQ+ G RLAR+ RR+ Sbjct: 184 YGYQRFDAFATLTTALVLIVIVQLIQTLGTRLARRLRRE 222 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.143 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 904,894,475 Number of extensions: 26713758 Number of successful extensions: 115717 Number of sequences better than 1.0e-05: 1461 Number of HSP's gapped: 115911 Number of HSP's successfully gapped: 1461 Length of query: 219 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 89 Effective length of database: 1,835,964,253 Effective search space: 163400818517 Effective search space used: 163400818517 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 128 (53.9 bits)