BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0307.0010.p
         (114 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DHG6.1 B1DHG6_9BACL Putative uncharacterized protein                171   2e-41
B3KCN8.1 B3KCN8_9BACI Putative uncharacterized protein                170   4e-41
Q5L2Y7.1 Q5L2Y7_GEOKA Hypothetical conserved protein                  137   3e-31
C3J3P3.1 C3J3P3_9BACI Putative uncharacterized protein                137   3e-31
B7Y9E1.1 B7Y9E1_9BACI Putative uncharacterized protein                137   3e-31

>B1DHG6.1 B1DHG6_9BACL Putative uncharacterized protein
          Length = 115

 Score =  171 bits (433), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 75/114 (65%), Positives = 95/114 (83%)

Query: 1   MQPITPEDIQIRIDQLAGQDLYVHLELTTGAYASHLDSTRHPASAFISNAAVRYTQGSIS 60
           MQPI P ++Q R++ L  QD+Y+HLE+TTGAYA+H D+++HPA+ FISNA ++Y+ G IS
Sbjct: 2   MQPIHPAEVQRRLESLKDQDVYIHLEMTTGAYAAHNDASKHPAATFISNAVIQYSHGLIS 61

Query: 61  GTGPYRVGLKTIQGWIYAEGLTHVDETEKERLILAGHDSQGKLIVALQLSRETF 114
           G GP+RVGLK  QGW+Y+EGLTH +E E ERLILAGHD QGKL+VALQLSRE F
Sbjct: 62  GNGPFRVGLKMQQGWVYSEGLTHYEENEAERLILAGHDQQGKLVVALQLSREPF 115


>B3KCN8.1 B3KCN8_9BACI Putative uncharacterized protein
          Length = 114

 Score =  170 bits (430), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 76/114 (66%), Positives = 95/114 (83%)

Query: 1   MQPITPEDIQIRIDQLAGQDLYVHLELTTGAYASHLDSTRHPASAFISNAAVRYTQGSIS 60
           M+ I   ++Q  ID+L  QDLY+HLE+TTGAYA+H DS++HPA+ FI+NA +RY+ GSIS
Sbjct: 1   MELINQTEVQQMIDKLKDQDLYIHLEMTTGAYAAHYDSSKHPAANFITNATIRYSHGSIS 60

Query: 61  GTGPYRVGLKTIQGWIYAEGLTHVDETEKERLILAGHDSQGKLIVALQLSRETF 114
           G GPYRVGLK  QGW+Y EGLTH ++T+ ERLI+AGHDSQGKL+VALQLSRE F
Sbjct: 61  GNGPYRVGLKMGQGWVYTEGLTHFEQTDTERLIMAGHDSQGKLVVALQLSREPF 114


>Q5L2Y7.1 Q5L2Y7_GEOKA Hypothetical conserved protein
          Length = 115

 Score =  137 bits (345), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/114 (56%), Positives = 83/114 (72%)

Query: 1   MQPITPEDIQIRIDQLAGQDLYVHLELTTGAYASHLDSTRHPASAFISNAAVRYTQGSIS 60
           MQPI    +Q  +++ A +D+Y+HLE T GAYASH +   +   A+I NA +R+T+G I+
Sbjct: 1   MQPIDTAAVQEALNRFANRDVYIHLETTNGAYASHHNEGFYSVGAYIRNACIRFTRGKIT 60

Query: 61  GTGPYRVGLKTIQGWIYAEGLTHVDETEKERLILAGHDSQGKLIVALQLSRETF 114
           G GPYRVGLK   GW+YAEGLTH + TEK +L+LAGHD QGKL VAL+LS E F
Sbjct: 61  GPGPYRVGLKLDLGWVYAEGLTHWEWTEKGQLLLAGHDDQGKLAVALELSNEPF 114


>C3J3P3.1 C3J3P3_9BACI Putative uncharacterized protein
          Length = 115

 Score =  137 bits (345), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/114 (56%), Positives = 83/114 (72%)

Query: 1   MQPITPEDIQIRIDQLAGQDLYVHLELTTGAYASHLDSTRHPASAFISNAAVRYTQGSIS 60
           MQPI    +Q  +++ A +D+Y+HLE T GAYASH +   +   A+I NA +R+T+G I+
Sbjct: 1   MQPIDTAAVQEALNRFANRDVYIHLETTNGAYASHHNDGFYSVGAYIRNACIRFTRGKIT 60

Query: 61  GTGPYRVGLKTIQGWIYAEGLTHVDETEKERLILAGHDSQGKLIVALQLSRETF 114
           G GPYRVGLK   GW+YAEGLTH + TEK +L+LAGHD QGKL VAL+LS E F
Sbjct: 61  GPGPYRVGLKLDLGWVYAEGLTHWEWTEKGQLLLAGHDDQGKLAVALELSNEPF 114


>B7Y9E1.1 B7Y9E1_9BACI Putative uncharacterized protein
          Length = 115

 Score =  137 bits (345), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/114 (56%), Positives = 83/114 (72%)

Query: 1   MQPITPEDIQIRIDQLAGQDLYVHLELTTGAYASHLDSTRHPASAFISNAAVRYTQGSIS 60
           MQPI    +Q  +++ A +D+Y+HLE T GAYASH +   +   A+I NA +R+T+G I+
Sbjct: 1   MQPIDTAAVQEALNRFANRDVYIHLETTNGAYASHHNDGFYSVGAYIRNACIRFTRGKIT 60

Query: 61  GTGPYRVGLKTIQGWIYAEGLTHVDETEKERLILAGHDSQGKLIVALQLSRETF 114
           G GPYRVGLK   GW+YAEGLTH + TEK +L+LAGHD QGKL VAL+LS E F
Sbjct: 61  GPGPYRVGLKLDLGWVYAEGLTHWEWTEKGQLLLAGHDDQGKLAVALELSNEPF 114


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 678,201,940
Number of extensions: 25771121
Number of successful extensions: 57273
Number of sequences better than 1.0e-05: 127
Number of HSP's gapped: 57239
Number of HSP's successfully gapped: 127
Length of query: 114
Length of database: 3,060,696,203
Length adjustment: 81
Effective length of query: 33
Effective length of database: 2,297,593,988
Effective search space: 75820601604
Effective search space used: 75820601604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)