BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0009.p (224 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KCN9.1 B3KCN9_9BACI LmbE family protein 333 9e-90 B1DHG7.1 B1DHG7_9BACL LmbE family protein 323 8e-87 A4IKA8.1 A4IKA8_GEOTN LmbE-related protein 272 2e-71 C5D596.1 C5D596_9BACI LmbE family protein 271 4e-71 Q5L2Y8.1 Q5L2Y8_GEOKA Hypothetical conserved protein 271 5e-71 >B3KCN9.1 B3KCN9_9BACI LmbE family protein Length = 218 Score = 333 bits (853), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 154/215 (71%), Positives = 179/215 (83%) Query: 9 QRILVVFPHPDDEAFAASGTLAMYIDSGAQVTYACLTLGEMGRNMGIPPFASRVTLPAIR 68 Q ILVV PHPDDEAF SGTLA YI GA VTYACLTLGEMGRNMGIPPFA+R+TLP IR Sbjct: 3 QNILVVLPHPDDEAFGLSGTLAKYIVEGAHVTYACLTLGEMGRNMGIPPFANRITLPTIR 62 Query: 69 KEELAASCLAIGIRDLRMLGFHDKMIEFEDQQRLDNEIMALLQELRPSLVITFYPGYSVH 128 K EL SC AIGI+DLR+LGFHDK IEFEDQ +LD I +LLQE++PSLV TFYPGYSVH Sbjct: 63 KAELEESCKAIGIQDLRLLGFHDKTIEFEDQDKLDGVIASLLQEIKPSLVFTFYPGYSVH 122 Query: 129 PDHDATGAAVIRTIGRLPAAERPLVHCVAFASNHERAIGKADVIVDVTAFLEQKMASIRA 188 PDHDATGAAVIRTIGR+PA ERP+V C+AF++N E+ +GK DV DV+ F+ QK+ SI+A Sbjct: 123 PDHDATGAAVIRTIGRMPAEERPVVQCLAFSNNCEQELGKPDVYQDVSMFMVQKLNSIQA 182 Query: 189 HRSQFQAAELVGNQELTDEEIRARFGTEPFWTYRF 223 HRSQFQAAEL+G +++ +E+ RFGTE FWTY F Sbjct: 183 HRSQFQAAELLGKKQMKAKEVEQRFGTERFWTYTF 217 >B1DHG7.1 B1DHG7_9BACL LmbE family protein Length = 220 Score = 323 bits (827), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 147/216 (68%), Positives = 176/216 (81%) Query: 9 QRILVVFPHPDDEAFAASGTLAMYIDSGAQVTYACLTLGEMGRNMGIPPFASRVTLPAIR 68 +RILVV PHPDDEAF SGTLA ID GAQVTYACLTLGEM RNMG PPFASR+TLP IR Sbjct: 2 ERILVVLPHPDDEAFTMSGTLAQLIDQGAQVTYACLTLGEMARNMGFPPFASRITLPQIR 61 Query: 69 KEELAASCLAIGIRDLRMLGFHDKMIEFEDQQRLDNEIMALLQELRPSLVITFYPGYSVH 128 + EL SC AIGI+DLRMLGFHDK IEFED+ LD I AL++E++P ++ TFYPGYSVH Sbjct: 62 RGELEESCAAIGIQDLRMLGFHDKTIEFEDKVFLDEHIHALIEEVKPDVIFTFYPGYSVH 121 Query: 129 PDHDATGAAVIRTIGRLPAAERPLVHCVAFASNHERAIGKADVIVDVTAFLEQKMASIRA 188 PDHDATG AV+RT+GRLP ERP V+CVAF+ NHE+ IGK D+ DV + + KMASIRA Sbjct: 122 PDHDATGEAVVRTVGRLPEEERPPVYCVAFSRNHEQFIGKPDISFDVRDYTKNKMASIRA 181 Query: 189 HRSQFQAAELVGNQELTDEEIRARFGTEPFWTYRFD 224 HRSQF ++E+ GN++ TD+E++ R GTE FWTY+F+ Sbjct: 182 HRSQFNSSEIFGNKQHTDKEVQERMGTERFWTYKFE 217 >A4IKA8.1 A4IKA8_GEOTN LmbE-related protein Length = 217 Score = 272 bits (695), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 128/220 (58%), Positives = 162/220 (73%), Gaps = 11/220 (5%) Query: 9 QRILVVFPHPDDEAFAASGTLAMYIDSGAQVTYACLTLGEMGRNMGIPPFASRVTLPAIR 68 Q +LVVFPHPDDEAF SGT+A Y+ SG VTYACLTLGEMGRNMG+PPFA+R TLP IR Sbjct: 4 QHVLVVFPHPDDEAFGVSGTIAQYVQSGTPVTYACLTLGEMGRNMGVPPFANRETLPLIR 63 Query: 69 KEELAASCLAIGIRDLRMLGFHDKMIEFEDQQRLDNEIMALLQELRPSLVITFYPGYSVH 128 ++EL +C +GI DLR+LG+ DK +EFED++ L + I A++ E PSLVITFYPGYSVH Sbjct: 64 RQELEEACRVLGIHDLRLLGYRDKTVEFEDEEELADRIAAIVSETNPSLVITFYPGYSVH 123 Query: 129 PDHDATGAAVIRTIGRLPAAERPLVHCVAFASNHERAIGKADVIVDVTAFLEQKMASIRA 188 PDHDA GAAVIR + R P +RP V+CVAF+ N E+ +G+ D++ DV++ ++ K+A+IRA Sbjct: 124 PDHDACGAAVIRALKRWPKEQRPTVYCVAFSKNCEQDLGQPDIVHDVSSVIDTKLAAIRA 183 Query: 189 HRSQ----FQAAELVGNQELTDEEIRARFGTEPFWTYRFD 224 HRSQ QAA G+ A TE FWTYR+D Sbjct: 184 HRSQTEGLMQAASKRGDA-------LAWLKTERFWTYRWD 216 >C5D596.1 C5D596_9BACI LmbE family protein Length = 217 Score = 271 bits (692), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 128/216 (59%), Positives = 162/216 (75%), Gaps = 2/216 (0%) Query: 9 QRILVVFPHPDDEAFAASGTLAMYIDSGAQVTYACLTLGEMGRNMGIPPFASRVTLPAIR 68 + ILVVFPHPDDEAF SGTLA + ++G +TYACLTLGEMGRNMG+PPFA+R TLP IR Sbjct: 3 RHILVVFPHPDDEAFGVSGTLAQHAENGTPITYACLTLGEMGRNMGVPPFANRETLPLIR 62 Query: 69 KEELAASCLAIGIRDLRMLGFHDKMIEFEDQQRLDNEIMALLQELRPSLVITFYPGYSVH 128 K+EL +C IGI DLR+LG+ DK IEFED++ L + I ++ E PSLVITFYPGYSVH Sbjct: 63 KKELEEACKTIGIHDLRLLGYRDKTIEFEDEELLADRIGEIVAETNPSLVITFYPGYSVH 122 Query: 129 PDHDATGAAVIRTIGRLPAAERPLVHCVAFASNHERAIGKADVIVDVTAFLEQKMASIRA 188 PDHDA GAAVIR + RLP +RP+VHCVAF+ N E+ +GK DVI DV+A +++K+A+I+A Sbjct: 123 PDHDACGAAVIRALKRLPKDKRPVVHCVAFSKNCEQDLGKPDVIRDVSAVIDKKLAAIQA 182 Query: 189 HRSQFQAAELVGNQELTDEEIRARFGTEPFWTYRFD 224 HRSQ + + D + TE FWTY++D Sbjct: 183 HRSQTEGLMKAAAKRGGD--VLEWLKTERFWTYKWD 216 >Q5L2Y8.1 Q5L2Y8_GEOKA Hypothetical conserved protein Length = 217 Score = 271 bits (692), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 130/220 (59%), Positives = 162/220 (73%), Gaps = 11/220 (5%) Query: 9 QRILVVFPHPDDEAFAASGTLAMYIDSGAQVTYACLTLGEMGRNMGIPPFASRVTLPAIR 68 + +LVVFPHPDDEAF SGT+A + +G VTYACLTLGEMGRNMG+PPFA+R TLP IR Sbjct: 4 RHVLVVFPHPDDEAFGVSGTIAEHAQNGTPVTYACLTLGEMGRNMGVPPFANRETLPHIR 63 Query: 69 KEELAASCLAIGIRDLRMLGFHDKMIEFEDQQRLDNEIMALLQELRPSLVITFYPGYSVH 128 K+EL +C +GI DLR+LG+ DK +EFED++ L ++I A++ E PSLVITFYPGYSVH Sbjct: 64 KQELEEACRILGIHDLRLLGYRDKTVEFEDEEELADQIAAIVAETNPSLVITFYPGYSVH 123 Query: 129 PDHDATGAAVIRTIGRLPAAERPLVHCVAFASNHERAIGKADVIVDVTAFLEQKMASIRA 188 PDHDA GAAVIR + R P ERP VHCVAFA N E+ +G+ DV+ DV++ ++ K+A+IRA Sbjct: 124 PDHDACGAAVIRALKRWPKEERPTVHCVAFAKNCEQDLGQPDVVRDVSSVIDTKLAAIRA 183 Query: 189 HRSQ----FQAAELVGNQELTDEEIRARFGTEPFWTYRFD 224 HRSQ QAA G+ A TE FWTYR+D Sbjct: 184 HRSQTEGLMQAASKRGDA-------LAWLKTERFWTYRWD 216 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,269,551,390 Number of extensions: 47547070 Number of successful extensions: 113373 Number of sequences better than 1.0e-05: 500 Number of HSP's gapped: 113303 Number of HSP's successfully gapped: 500 Length of query: 224 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 93 Effective length of database: 1,826,543,238 Effective search space: 169868521134 Effective search space used: 169868521134 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)