BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0001.p (386 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAW8.1 B3KAW8_9BACI Aminotransferase class I and II 350 1e-94 C0Z7H4.1 C0Z7H4_BREBN Threonine-phosphate decarboxylase EC=4.1.1.81 296 2e-78 C1TJJ7.1 C1TJJ7_9FIRM L-threonine-O-3-phosphate decarboxylase 194 2e-47 B1DLT4.1 B1DLT4_9BACL L-threonine-O-3-phosphate decarboxylase 191 1e-46 C5BGU6.1 C5BGU6_EDWIC Threonine-phosphate decarboxylase, putativ... 186 3e-45 >B3KAW8.1 B3KAW8_9BACI Aminotransferase class I and II Length = 374 Score = 350 bits (898), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 187/351 (53%), Positives = 230/351 (65%), Gaps = 1/351 (0%) Query: 1 MLEKYGHGGDLLTAAELYGNGSGGAFVDFSANINXXXXXXXXXXXXRDAVSAVTAYPDPG 60 ++E YGHGGD+ TAA YG + AF+D+SANIN + +SAV YPDPG Sbjct: 8 LIEVYGHGGDVETAAAAYGRAAS-AFLDYSANINPLGPPQGVMAALEEGMSAVIRYPDPG 66 Query: 61 HRRLKSLLAESLGVDREWITVGNGAAESMXXXXXXXXPRRVGIVEPCFSEYRQLAGQFGA 120 HR K LLAE LG D + I VGNGAAE M PR VG+V+PCFSEYR+L+ +FG+ Sbjct: 67 HREFKRLLAEELGTDAQCILVGNGAAECMALLLLGLQPRTVGVVDPCFSEYRELSLKFGS 126 Query: 121 EVLPVRGTKEQGYRAGVQSIAGLLEQVDLLFLGQPNNPNGVQYXXXXXXXXXXXXERCGT 180 ++ V G E+ +RA + L+ DL+F+GQPNNPNGVQY E+ GT Sbjct: 127 DIRSVCGQPERDWRADKADMMELIACTDLVFVGQPNNPNGVQYSLEEIRELAACAEQEGT 186 Query: 181 VLAVDEAFIDFIPEERRQSLLPELKSYRHTVLIRSMTKFYAIPGLRLGFTIAAPELAAAM 240 L +DEAFIDFIP E RQ+L+PEL Y T+++RSMTKFYAIPGLRLG+T+A P++ AM Sbjct: 187 WLVLDEAFIDFIPPEDRQTLMPELLDYPRTIIVRSMTKFYAIPGLRLGYTVAHPDVIRAM 246 Query: 241 SGKQVTWSVNGLALLAGEACLRSGRGYEERTXXXXXXXXXXXXXXXXXXXCEVPLGEANF 300 +GKQVTWSVNGLALLAGEACL SGR YE T +V GEANF Sbjct: 247 AGKQVTWSVNGLALLAGEACLGSGREYELDTLQLIRVEREKLIHGLRALGLDVTPGEANF 306 Query: 301 LLLGLPAPWSAAALQEKLGRRGLLVRSCAMYPGLAPGHIRVAVKSREDNAR 351 LL+ LP PW+A Q+++GRRG+LVRSCAMYPGL HIR+AVK N R Sbjct: 307 LLMELPRPWNAGTFQQEMGRRGVLVRSCAMYPGLGERHIRLAVKDAGSNDR 357 >C0Z7H4.1 C0Z7H4_BREBN Threonine-phosphate decarboxylase EC=4.1.1.81 Length = 371 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 158/352 (44%), Positives = 211/352 (59%), Gaps = 3/352 (0%) Query: 1 MLEKYGHGGDLLTAAELYGNGSGGAFVDFSANINXXXXXXXXXXXXRDAVSAVTAYPDPG 60 ++E YGHGGDLLTAA+ +G G F+D+SANIN +++AV YPDPG Sbjct: 6 VIETYGHGGDLLTAAQRFGR-EPGQFLDYSANINPLGMPASVREMLLASLAAVAHYPDPG 64 Query: 61 HRRLKSLLAESLGVDREWITVGNGAAESMXXXXXXXXPRRVGIVEPCFSEYRQLAGQFGA 120 HR + LA+ L + EW+ NGAAE+M P+ VG+V PCFSEY QL+ Q+GA Sbjct: 65 HRVFRRALAKRLQMSEEWLLPANGAAEAMALAILGLSPQTVGVVYPCFSEYAQLSEQYGA 124 Query: 121 EVLPVRGTKEQGYRAGVQSIAGLLEQVDLLFLGQPNNPNGVQYXXXXXXXXXXXXERCGT 180 V+ G + GY+ + + L Q DL+F+G PNNP G+ Y + T Sbjct: 125 RVIGCFGKEANGYKPDPEELYTLFAQTDLVFVGSPNNPTGILYQPDELRQMAEWAQETNT 184 Query: 181 VLAVDEAFIDFIPEERRQSLLPELKSYRHTVLIRSMTKFYAIPGLRLGFTIAAPELAAAM 240 L VDEAF+DF+ EER+ +L +L+ + +L+RSMTK YAIPGLRLG+ IA P++ A M Sbjct: 185 WLVVDEAFLDFVEEERQYTLAMQLERFPRVILMRSMTKMYAIPGLRLGYAIAHPDVIAKM 244 Query: 241 SGKQVTWSVNGLALLAGEACLRSGRGYEERTXXXXXXXXXXXXXXXXXXX-CEVPLGEAN 299 KQV+WSVN LALLAGE CL+ + YEE+T +V EAN Sbjct: 245 RQKQVSWSVNALALLAGELCLQE-QAYEEQTRRLIKTERAYLTDCIRSELGWKVWPSEAN 303 Query: 300 FLLLGLPAPWSAAALQEKLGRRGLLVRSCAMYPGLAPGHIRVAVKSREDNAR 351 FLLL P A LQ +LG++G+L+R+CAMYPGL +RVAV+ RE+N R Sbjct: 304 FLLLRSPEGLPAEQLQARLGKKGVLIRNCAMYPGLTAHDVRVAVRGREENER 355 >C1TJJ7.1 C1TJJ7_9FIRM L-threonine-O-3-phosphate decarboxylase Length = 366 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 117/349 (33%), Positives = 174/349 (49%), Gaps = 2/349 (0%) Query: 4 KYGHGGDLLTAAELYGNGSGGAFVDFSANINXXXXXXXXXXXXRDAVSAVTAYPDPGHRR 63 ++ HGG+L A+E +G F+DFSANIN + ++++TAYPDP R Sbjct: 5 QHIHGGNLKVASEKFGY-EQRQFIDFSANINPLGPSPRAMLAMSEGLASITAYPDPDCRE 63 Query: 64 LKSLLAESLGVDREWITVGNGAAESMXXXXXXXXPRRVGIVEPCFSEYRQLAGQFGAEVL 123 L + LA L + + I GNGA E + ++ + P FSEY G EV Sbjct: 64 LTAALAGYLHIGSDNILFGNGATELIYLLVDVFKYKKALVCAPTFSEYGLAVLSRGGEVA 123 Query: 124 PVRGTKEQGYRAGVQSIAGLLEQVDLLFLGQPNNPNGVQYXXXXXXXXXXXXERCGTVLA 183 + +E + V+ I L V++LFL PNNP G C ++A Sbjct: 124 EILLAEEDNFALPVEEIIARLPSVEILFLCNPNNPTGRLCSKQDILRIAAAARECSCMVA 183 Query: 184 VDEAFIDFIPEERRQSLLPELKSYRHTVLIRSMTKFYAIPGLRLGFTIAAPELAAAMSGK 243 VDEAF+DF+ E+ S+L E + + +++ S+TK++ IPGLRLG +A+ E+ A + Sbjct: 184 VDEAFMDFVEEKDNYSVLEEALNRDNLIVLYSLTKYFGIPGLRLGTAVASREIIARLKAA 243 Query: 244 QVTWSVNGLALLAGEACLRSGRGYEERTXXXXXXXXXXXXXXXXXXXCEVPLGEANFLLL 303 + WSVN LA +AG L + +V G AN+LL+ Sbjct: 244 KDPWSVNTLAQIAGVHSLADAEYIKNTKILVTQEREFLEEALQRIVGLKVYHGVANYLLI 303 Query: 304 GLP-APWSAAALQEKLGRRGLLVRSCAMYPGLAPGHIRVAVKSREDNAR 351 + +++ E+LGRRG+LVR CA + GL ++RVAVK REDN R Sbjct: 304 NIKDTQYTSQVFVEQLGRRGVLVRDCASFKGLGNNYLRVAVKKREDNLR 352 >B1DLT4.1 B1DLT4_9BACL L-threonine-O-3-phosphate decarboxylase Length = 363 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/351 (34%), Positives = 167/351 (47%), Gaps = 10/351 (2%) Query: 1 MLEKYGHGGDLLTAAELYGNGSGGAFVDFSANINXXXXXXXXXXXXRDAVSAVTAYPDPG 60 MLE+YGHGGDL TA E +G F+DFS+N+N + YPDP Sbjct: 1 MLERYGHGGDLRTAEETFG-FPARQFIDFSSNMNPFGPPDGVRRALVHYAEQIDRYPDPA 59 Query: 61 HRRLKSLLAESLGVDREWITVGNGAAESMXXXXXXXXPRRVGIVEPCFSEYRQLAGQFGA 120 R L++ LA+ VD + I +GNGAAE + P + PCF+EY + G Sbjct: 60 VRGLRTKLAQLHRVDEQSILIGNGAAELIDLVVRALRPSVTALAYPCFTEYGDAVMKTGG 119 Query: 121 EVLPVRGTKEQGYRAGVQSIAGLLEQVDLLFLGQPNNPNGVQYXXXXXXXXXXXXERCGT 180 + PV + + + I + +G PNNP G G Sbjct: 120 SITPVMLSADNEFVLNSTMIED--SEAAFYMIGSPNNPTG----QLVDPALIMKLVYSGA 173 Query: 181 VLAVDEAFIDFIPEERRQSLLPELKSYRHTVLIRSMTKFYAIPGLRLGFTIAAPELAAAM 240 + VDEAF+DF+PEE + +LL E + +IRSMTKFYA+PG+RLG+ + P A + Sbjct: 174 TVVVDEAFMDFVPEEEKYTLLREAAVHERLFVIRSMTKFYAVPGIRLGYMVGTPHKIAEL 233 Query: 241 SGKQVTWSVNGLALLAGEACLRSGRGYEERTXXXXXXXXXXXXXXXXXXXCEVPLGEANF 300 QV WSVN LA GEA L + Y RT V G+ N+ Sbjct: 234 RRLQVPWSVNSLAQQIGEAVLEE-KEYAVRTMNWLLEERPWLIGKLEELGFRVIPGKVNY 292 Query: 301 LLLGLPAP--WSAAALQEKLGRRGLLVRSCAMYPGLAPGHIRVAVKSREDN 349 LL+ LP +AA LQ ++GR G+L+R + + GL + R AVK R N Sbjct: 293 LLVRLPDIPGLTAAGLQYEMGRMGILIRDASHFIGLDESYCRFAVKLRHQN 343 >C5BGU6.1 C5BGU6_EDWIC Threonine-phosphate decarboxylase, putative EC=4.1.1.81 Length = 358 Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 123/347 (35%), Positives = 165/347 (47%), Gaps = 8/347 (2%) Query: 7 HGGDLLTAAELYGNGSGGAFVDFSANINXXXXXXXXXXXXRDAVSAVTAYPDPGHRRLKS 66 HGGD++ AE G S DFSANIN +S YPD +R L Sbjct: 6 HGGDVIGVAERLGV-SALNLTDFSANINPLGMPDSLRQALHHHLSLAQPYPDIEYRALYR 64 Query: 67 LLAESLGVDREWITVGNGAAESMXXXXXXXXPRRVGIVEPCFSEYRQLAGQFGAEVLPVR 126 LA+ GVD WI GNG E + PRR ++ P F+EYR+ + G + Sbjct: 65 ALADHHGVDAGWIVAGNGETELIFALADALRPRRALLLTPGFAEYRRALQRVGCAIQTHP 124 Query: 127 GTKEQGYRAGVQSIAGLLEQVDLLFLGQPNNPNGVQYXXXXXXXXXXXXERCGTVLAVDE 186 G++ +A L +D LF+ PNNP G+ + G L VDE Sbjct: 125 LKAGNGFQVDEDLLAALTADLDCLFICTPNNPTGLTPDPALLLVLAERCQHLGIRLIVDE 184 Query: 187 AFIDFIPEERRQSLLPELKSYRHTVLIRSMTKFYAIPGLRLGFTIAA-PELAAAMSGKQV 245 AF DFI +E ++P+L + ++RS+TKFYAI GLRLG+ ++A L A + +Q+ Sbjct: 185 AFWDFITDE--AGMIPQLARFSCLCVLRSLTKFYAIAGLRLGYLLSADASLTARLRARQM 242 Query: 246 TWSVNGLALLAGEACLRSGRGYEERTXXXXXXXX-XXXXXXXXXXXCEVPLGEANFLLLG 304 WS+N A LAGE LR R Y++ T +V G AN+L L Sbjct: 243 PWSINAFAALAGEVVLRD-RAYQQATHRWLAQERPFLYSALAALPSLQVWPGRANYLFLR 301 Query: 305 LPAPWSAAALQEKLGRRGLLVRSCAMYPGLAPGHIRVAVKSREDNAR 351 P LQ+ L GLL+R CA YPGL P + RV V+ R DN R Sbjct: 302 CDRP--QICLQQALLSHGLLIRRCADYPGLDPRYYRVCVRLRSDNLR 346 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,868,253,321 Number of extensions: 72435303 Number of successful extensions: 138015 Number of sequences better than 1.0e-05: 2083 Number of HSP's gapped: 136143 Number of HSP's successfully gapped: 2083 Length of query: 386 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 249 Effective length of database: 1,770,017,148 Effective search space: 440734269852 Effective search space used: 440734269852 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)