BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0305.0039.p (173 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5F9.1 B3K5F9_9BACI Glycoside hydrolase family 3 domain protein 214 2e-54 B0KDG0.1 B0KDG0_THEP3 Glycoside hydrolase, family 3 domain protein 157 4e-37 Q9JRQ1.1 Q9JRQ1_THEET Xylosidase/arabinosidase 157 4e-37 P96090.1 P96090_THEBR Beta-xylo-glucosidase 156 5e-37 C3R040.1 C3R040_9BACE Glycoside hydrolase 155 1e-36 >B3K5F9.1 B3K5F9_9BACI Glycoside hydrolase family 3 domain protein Length = 774 Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 97/161 (60%), Positives = 124/161 (77%) Query: 1 VNPSGKLPVSLPRSSGQLPVYYNQKDPGRPRVYVDMPSAPLYPFGHGLSYTRFEYSSVAL 60 VNPSGKLPVS+PRS GQLPVYYNQK+ GRPR YVDMPS PLYPFG GLSY+ FEY S A+ Sbjct: 601 VNPSGKLPVSIPRSVGQLPVYYNQKNAGRPRPYVDMPSKPLYPFGFGLSYSSFEYGSPAI 660 Query: 61 SADSISAGDLKAGREVAASIKVRNTGTSRGMETVQLYIRARESGITRRIAELKGFHKITL 120 S + ++ +L++G V ++V+N+G +G E VQLYI+A +SGITRR+ ELKGF K+ L Sbjct: 661 SQNEVTLDELRSGSRVEVCVEVKNSGKLKGDEVVQLYIQADQSGITRRLRELKGFKKVML 720 Query: 121 QPNEEKTVTFRLGVEELGVWNTAMKFAPVPCRVTVMAGGSS 161 +P + TVTF+LG EEL +WN M + VPCRV+++ GG S Sbjct: 721 EPGDSTTVTFKLGFEELAIWNRNMDYDVVPCRVSIVVGGHS 761 >B0KDG0.1 B0KDG0_THEP3 Glycoside hydrolase, family 3 domain protein Length = 784 Score = 157 bits (396), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 81/168 (48%), Positives = 108/168 (64%), Gaps = 8/168 (4%) Query: 2 NPSGKLPVSLPRSSGQLPVYYNQK-DPGRPRV---YVDMPSAPLYPFGHGLSYTRFEYSS 57 NP GKLP+S+P+S GQLPVYY K GR YV++ + PLYPFG+GLSYT F Y++ Sbjct: 594 NPGGKLPISIPQSVGQLPVYYYHKPSGGRSHWKGDYVELSTKPLYPFGYGLSYTEFSYTN 653 Query: 58 VALSADSISAGDLKAGREVAASIKVRNTGTSRGMETVQLYIRARESGITRRIAELKGFHK 117 + +S +S D R V S+ ++NTGT +G E VQLYI +TR + ELKGF + Sbjct: 654 LNISNRKVSLRD----RMVEISVDIKNTGTLKGDEVVQLYIHQEALSVTRPVKELKGFKR 709 Query: 118 ITLQPNEEKTVTFRLGVEELGVWNTAMKFAPVPCRVTVMAGGSSADTQ 165 ITL EEKTV F+L +E+LG ++ M++ P RV VM G SS D + Sbjct: 710 ITLDAGEEKTVIFKLSIEQLGFYDENMEYVVEPGRVDVMIGSSSEDIR 757 >Q9JRQ1.1 Q9JRQ1_THEET Xylosidase/arabinosidase Length = 784 Score = 157 bits (396), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 81/168 (48%), Positives = 108/168 (64%), Gaps = 8/168 (4%) Query: 2 NPSGKLPVSLPRSSGQLPVYYNQK-DPGRPRV---YVDMPSAPLYPFGHGLSYTRFEYSS 57 NP GKLP+S+P+S GQLPVYY K GR YV++ + PLYPFG+GLSYT F Y++ Sbjct: 594 NPGGKLPISIPQSVGQLPVYYYHKPSGGRSHWKGDYVELSTKPLYPFGYGLSYTEFSYTN 653 Query: 58 VALSADSISAGDLKAGREVAASIKVRNTGTSRGMETVQLYIRARESGITRRIAELKGFHK 117 + +S +S D R V S+ ++NTGT +G E VQLYI +TR + ELKGF + Sbjct: 654 LNISNRKVSLRD----RMVEISVDIKNTGTLKGDEVVQLYIHQEALSVTRPVKELKGFKR 709 Query: 118 ITLQPNEEKTVTFRLGVEELGVWNTAMKFAPVPCRVTVMAGGSSADTQ 165 ITL EEKTV F+L +E+LG ++ M++ P RV VM G SS D + Sbjct: 710 ITLDAGEEKTVIFKLSIEQLGFYDENMEYVVEPGRVDVMIGSSSEDIR 757 >P96090.1 P96090_THEBR Beta-xylo-glucosidase Length = 730 Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 81/168 (48%), Positives = 108/168 (64%), Gaps = 8/168 (4%) Query: 2 NPSGKLPVSLPRSSGQLPVYYNQK-DPGRPRV---YVDMPSAPLYPFGHGLSYTRFEYSS 57 NP GKLP+S+P+S GQLPVYY K GR YV++ + PLYPFG+GLSYT F Y++ Sbjct: 540 NPGGKLPISIPQSVGQLPVYYYHKPSGGRSHWKGDYVELSTKPLYPFGYGLSYTEFSYTN 599 Query: 58 VALSADSISAGDLKAGREVAASIKVRNTGTSRGMETVQLYIRARESGITRRIAELKGFHK 117 + +S +S D R V S+ ++NTGT +G E VQLYI +TR + ELKGF + Sbjct: 600 LNISNRKVSLRD----RMVEISVDIKNTGTLKGDEVVQLYIHQEALSVTRPVKELKGFKR 655 Query: 118 ITLQPNEEKTVTFRLGVEELGVWNTAMKFAPVPCRVTVMAGGSSADTQ 165 ITL EEKTV F+L +E+LG ++ M++ P RV VM G SS D + Sbjct: 656 ITLDAGEEKTVIFKLSIEQLGFYDENMEYVVEPGRVDVMIGSSSEDIR 703 >C3R040.1 C3R040_9BACE Glycoside hydrolase Length = 733 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 83/178 (46%), Positives = 105/178 (58%), Gaps = 13/178 (7%) Query: 2 NPSGKLPVSLPRSSGQLPVYYNQKDPGRPRV-------YVDMPSAPLYPFGHGLSYTRFE 54 NPSGKLP++ P+ +GQ+P+YY K GRP Y+D+P+ P YPFG+GLSYT F Sbjct: 562 NPSGKLPMTFPQHNGQIPLYYQYKSTGRPTALGGWCAKYIDIPTEPAYPFGYGLSYTTFN 621 Query: 55 YSSVALSADSISAGDLKAGREVAASIKVRNTGTSRGMETVQLYIRARESGITRRIAELKG 114 YS V L GD K G ++ V NTG G E VQLY+R + ITR I ELKG Sbjct: 622 YSDVKLLP-----GDGK-GTYTRVAVTVTNTGKCEGEEVVQLYVRDEVASITRPIKELKG 675 Query: 115 FHKITLQPNEEKTVTFRLGVEELGVWNTAMKFAPVPCRVTVMAGGSSADTQAAELVIT 172 F KI L P E KTVTF + E+LG +N MKF T+M GG+S D Q + ++ Sbjct: 676 FEKIKLSPGESKTVTFDVKDEQLGFYNNQMKFIVEKGDFTLMVGGNSRDLQEIKYILN 733 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.132 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,024,054,966 Number of extensions: 40773511 Number of successful extensions: 94380 Number of sequences better than 1.0e-05: 1316 Number of HSP's gapped: 92184 Number of HSP's successfully gapped: 1317 Length of query: 173 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 47 Effective length of database: 1,873,648,313 Effective search space: 88061470711 Effective search space used: 88061470711 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)