BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0305.0037.p (530 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5G0.1 B3K5G0_9BACI Response regulator receiver 505 e-141 Q2BFH4.1 Q2BFH4_9BACI Putative uncharacterized protein 269 6e-70 Q8ES65.1 Q8ES65_OCEIH Hypothetical conserved protein 256 4e-66 B1DHC5.1 B1DHC5_9BACL Two component transcriptional regulator, A... 186 6e-45 C2H7P8.1 C2H7P8_ENTFC Response regulator 156 6e-36 >B3K5G0.1 B3K5G0_9BACI Response regulator receiver Length = 523 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 258/520 (49%), Positives = 357/520 (68%), Gaps = 6/520 (1%) Query: 8 NANGLKMLIVDDEPIICKGLRLTIDWAALGIEVIGEAYDGEEALQVMANTEVDFLLSDIR 67 + +KMLIVDDEP+IC+GL TIDWA G+EV+ EAYDG EALQV+ E+D +L+DIR Sbjct: 3 HVKTVKMLIVDDEPVICQGLHYTIDWADYGVEVVAEAYDGNEALQVVQEHEIDLVLTDIR 62 Query: 68 MEGMDGLQLAEQVGQRYPEVRMVIISGYEDFDYARQAMRLGVNDYLLKPVNVDELTGVVG 127 MEGMDGLQLA+++ R+P++R+++ISGYE+F+YARQA++L V DYLLKPV++DEL V Sbjct: 63 MEGMDGLQLAKELKLRHPQIRVIMISGYEEFEYARQAIKLDVTDYLLKPVDIDELVAAVT 122 Query: 128 KLADEIRXXXXXXXXXGGKDEVKLWLTHMARHG-IAYRRAVPPSL-QGAQFRILATQLGS 185 + ++IR G + +LWL+ MA H + +AVP L GA+++++ATQL Sbjct: 123 GIVEDIRQDTRVD---GSSKDAELWLSDMAAHNETSLTKAVPGDLVNGAEYKLMATQLEK 179 Query: 186 FHERYAELGQEKYEQLQEQWVSRLHQRLSLPGLRLVSIFDHENLLITLGVSDHWMEPQEW 245 F A + ++ LQ W+ + + L G+R +S+F H+NLL+TL ++D ++W Sbjct: 180 FSNLAASVSEQDLTMLQHVWIRTVRESLETSGIRQISVFVHKNLLLTLLMTDQPRPKRQW 239 Query: 246 RVLLDRLMEELIPEAELHCGVSQVYADATETADRCTEAAELLRYSVLGQAVVLDQEAVRQ 305 +L +++ E L+ VS YA +TA C+E LL Y L Q +LD+E + Sbjct: 240 EEILQAMLDAWPEEHRLYGAVSDAYASPDQTAAICSEVRALLPYYALEQRPLLDREYKSE 299 Query: 306 WSGVREPAALDIADMVQKLVAALFKQDAGETGGLVSEMLQFFRRESYLLHEIMTVYEELF 365 R D ADMV KL ALFKQDA L+ M +FFR + YLL +++ V +EL Sbjct: 300 VDNGRAKHDFDSADMVSKLSVALFKQDAEMLEELIDGMFRFFRDQRYLLTDMVNVCDELS 359 Query: 366 ALLRQRLRKSGITGMDYG-RQVPDLYLYNSYEALEELIRKDMADLLELIEQNGTDRSYWI 424 +LRQRLR+SG+T +++G + DL ++N +A+ I ++ DLL+LI++ G DRS+WI Sbjct: 360 IMLRQRLRQSGLTQLEHGLERTIDLEVFNHPDAIRLAISSEVFDLLQLIDRVGIDRSFWI 419 Query: 425 VEKAKRYIEAQYRTDLKASEVAAWLKITPSYFSYIFKQSTGKGFTEYMNELRIEQAKALL 484 +EKAK+Y+ Y +DLKASEVAA+LKITPSYFS IFKQSTGK F+EYMNELRI +A+ LL Sbjct: 420 IEKAKKYMADHYLSDLKASEVAAYLKITPSYFSNIFKQSTGKSFSEYMNELRINEARKLL 479 Query: 485 ASTHDKVFEIADQVGYKEYKYFVTVFKSYTGMTPKEYRGL 524 +T DKVFEIAD+VGYKEYKYFV+VFK YTGMTPK+YR L Sbjct: 480 LTTQDKVFEIADRVGYKEYKYFVSVFKLYTGMTPKKYRVL 519 >Q2BFH4.1 Q2BFH4_9BACI Putative uncharacterized protein Length = 515 Score = 269 bits (687), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 183/537 (34%), Positives = 282/537 (52%), Gaps = 41/537 (7%) Query: 8 NANGLKMLIVDDEPIICKGLRLTIDWAALGIEVIGEAYDGEEAL-QVMANTEVDFLLSDI 66 N KMLIVDDEP+IC+GL TI W IEV G A+DGEEA+ +V VD +++DI Sbjct: 3 NNMTFKMLIVDDEPMICRGLAYTIPWEEHQIEVAGLAHDGEEAMNKVKELNGVDIVITDI 62 Query: 67 RMEGMDGLQLAEQVGQRYPEVRMVIISGYEDFDYARQAMRLGVNDYLLKPVNVDELTGVV 126 RM DGL LA + +RYP+ R+++ISGY++F YA++A++LGV DYLLKPVN+DEL V Sbjct: 63 RMPNKDGLDLAAFLKERYPQTRIIMISGYDEFKYAQKAIQLGVEDYLLKPVNIDELLEVA 122 Query: 127 GKLADEIRXXXXXXXXXGGKDEVKLWLTHMARHGIAYRRAVPPSLQGAQFRILATQ---- 182 K+ EI ++++L R+ I + P+ + A +L T Sbjct: 123 QKITKEIHQRQAERRQ---HEQIRL------RNLIYHHVFDYPTDETAGNDLLETTPCFA 173 Query: 183 LGSFHERYAELGQEKYEQLQEQ---WVSRLHQRLSLPGLRLVSIFDHENLLITLGVSDHW 239 S ++ A G E+ + Q W + + +R VSIF ENLL+T V Sbjct: 174 FISMKKQDAITGAAHPEEEKAQKARWKKSIDDAFAEIDVRSVSIFMSENLLLTCLVE--- 230 Query: 240 MEPQEWRVLLDRLMEELIPEAELHCGVSQVY--ADATETADRCTEAAELLRYSVLGQAVV 297 Q + DR+ +L C S V+ +D ++A LR V + + Sbjct: 231 ---QSDSLAKDRI-------GKLVCEDSWVFLLSDHAVPLGSLSQAIGPLREGV--RHLP 278 Query: 298 LDQEAVRQWSGVREPAALDIA---DMVQKLVAALFKQDAGETGGLVSEMLQFFRRESYLL 354 ++ E + S + + + M +KL+ A+ + D + V ++ + + +LL Sbjct: 279 INSEKIFFCSELEKAESRSTPYPEQMEEKLIQAILRVDQNQIEEHVHLLVNYLKSNQFLL 338 Query: 355 HEIMTVYEELFALLRQRLR----KSGITGMDYGRQVPDLYLYNSYEALEELIRKDMADLL 410 E +++ + LR RL+ K Q +L + SY + +D+ + Sbjct: 339 EESISICRRMSRGLRSRLKSLGQKDSFHFPSVFEQGAELLIAESYAVFGGWLLQDIERAI 398 Query: 411 ELIEQNGTDRSYWIVEKAKRYIEAQYRTDLKASEVAAWLKITPSYFSYIFKQSTGKGFTE 470 + D W++E+A YI Y++++KA EVA + ITP+YFS +FKQ TGK F E Sbjct: 399 HVFNLKAADNKDWLIERALEYIRTYYKSEIKAQEVADVVNITPNYFSSLFKQKTGKSFNE 458 Query: 471 YMNELRIEQAKALLASTHDKVFEIADQVGYKEYKYFVTVFKSYTGMTPKEYRGLRAS 527 Y+N +R+E+AK LL T K+ EIA+Q G+ EYKYFV VF+ ++GMTP +YR LR++ Sbjct: 459 YVNHMRVEEAKTLLEETPFKINEIAEQAGFHEYKYFVEVFRKFSGMTPTQYRKLRST 515 >Q8ES65.1 Q8ES65_OCEIH Hypothetical conserved protein Length = 517 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 169/542 (31%), Positives = 283/542 (52%), Gaps = 59/542 (10%) Query: 13 KMLIVDDEPIICKGLRLTIDWAALGIEVIGEAYDGEEALQVMANTE-VDFLLSDIRMEGM 71 ++LIVDDEPII GL+ TI W IE + A DG +A++ + +D +LSD+RM M Sbjct: 5 RILIVDDEPIIRLGLQQTIPWEKYQIEKVEIACDGLDAIRKIDGLGGIDLVLSDVRMPNM 64 Query: 72 DGLQLAEQVGQRYPEVRMVIISGYEDFDYARQAMRLGVNDYLLKPVNVDELTGVVGKLAD 131 DGLQLA + + +P+ + ++ISGY++F YA++A++ GV DYLLKPV+++EL V L Sbjct: 65 DGLQLASYLHKNHPQTKTMLISGYDEFAYAKKAIQSGVKDYLLKPVDINELESKVNSLVK 124 Query: 132 EIRXXXXXXXXXGGKDEVKL---WLTHMARHGIAYRRAVPPSLQGAQFRILATQLGSFHE 188 E+ K+ + + H I+ R P ++ F I + G + Sbjct: 125 ELEAEQHVKNKTRQKEIRNIIFQQIYHFPEETISVNRY--PDIKIYPF-ISTLKYG---K 178 Query: 189 RYAELGQEKYEQLQEQWVSRLHQRLSLPGLRLVSIFDHENLLITLGVS--DHWMEPQEWR 246 + +L ++ +QW ++Q + G SIF H N L+T + D + P E Sbjct: 179 KINQLSEQGLTFFNQQWKDTINQATEMLGFDAESIFVHRNQLLTCLIQPIDSQINPIE-- 236 Query: 247 VLLDRLMEELIPEAELHCGV-SQVYADATETADRCTEAAELLRYSVLGQAVVLDQEAVRQ 305 + ELI + S + T+ + + + Y L +R+ Sbjct: 237 ------VAELITHKHSFSFIWSDSVINVTDLKAKYNQLKTIHNYLPL----------IRE 280 Query: 306 WSGVREPAALDIADMV-------QKLVAALFKQDA---GETGGLVSEMLQFFRRESYLLH 355 + +D +DM ++L+ LF++ + ++ + +FRR S+LL Sbjct: 281 HDVIFSNYQMDRSDMQAYPYEIERELIETLFRRKPLQHNQVEKWITTLFDYFRRHSFLLQ 340 Query: 356 E-----------IMTVYEELFALLRQRLRKSGITGMDYGRQVPDLYLYNSYEALEELIRK 404 E IM YE L + +L + +D L+LYNSY +++ L + Sbjct: 341 EVQDVCNHMLKVIMKEYEALLGEISVKLDCHFLNDVD-------LFLYNSYSSIQYLFEQ 393 Query: 405 DMADLLELIEQNGTDRSYWIVEKAKRYIEAQYRTDLKASEVAAWLKITPSYFSYIFKQST 464 D+ +++ + + +++ W++++A+RYI +RT +K EVA + ++ +YFS +FKQ T Sbjct: 394 DLELIMKKLAHHKLEKADWLIKQAERYINEYFRTTIKVQEVADVINVSSNYFSTLFKQKT 453 Query: 465 GKGFTEYMNELRIEQAKALLASTHDKVFEIADQVGYKEYKYFVTVFKSYTGMTPKEYRGL 524 G+ F EY+N+LR+E+AK+LL +T KV EI+ QVG++EYKYFV+VFK ++G+TP YR L Sbjct: 454 GENFNEYVNKLRVEEAKSLLINTPFKVSEISIQVGFQEYKYFVSVFKKFSGLTPTNYRKL 513 Query: 525 RA 526 A Sbjct: 514 TA 515 >B1DHC5.1 B1DHC5_9BACL Two component transcriptional regulator, AraC family Length = 532 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 157/538 (29%), Positives = 247/538 (45%), Gaps = 37/538 (6%) Query: 13 KMLIVDDEPIICKGLRLTIDWAALGIEVIGEAYDGEEALQVMANTEVDFLLSDIRMEGMD 72 ++LIVDDE G+++ IDWAA IE++GEA DG EAL++M VD LL+DIRM MD Sbjct: 3 RLLIVDDEERARTGIKMLIDWAAHRIEIVGEARDGAEALEIMEGKGVDILLTDIRMPVMD 62 Query: 73 GLQLAEQVGQRYPEVRMVIISGYEDFDYARQAMRLGVNDYLLKPVNVDELTGVVGKLADE 132 GL+L +QV + +P VR +I+SG+++F YA++AM GV YLLKP E+ +V KL +E Sbjct: 63 GLELIQQVSKVHPAVRCIIMSGHDEFAYAQKAMASGVAHYLLKPSRRQEILDLVIKLTEE 122 Query: 133 I----RXXXXXXXXXGGKDEVKLWLTHMARHGIAYRRAVPP-------------SLQGAQ 175 I R G E +L A +A PP S Sbjct: 123 IAEERRENEKLEGLRSGFRESFPFLKEYALSRLALTE-TPPYDRLLNNLMLSDISFPLPF 181 Query: 176 FRILATQLGSFHERYAELGQEKYEQLQEQWVSRLHQRLSLPGLRLVSIFDHENLLITLGV 235 F L Q+ + H G E L + + + + P R + F+H + ++ L Sbjct: 182 FGALIVQIDNLHLVQQRFGSVDIE-LFKYALKNIAEETFAPLCRCAA-FEHNDDVVLLMN 239 Query: 236 SDHWMEPQEWRVLLDRLMEELIPEAE------LHCGVSQVYADATETADRCTEAAELLRY 289 ++ W++ + LL E + AE + G+ D EA + L Sbjct: 240 AEEWLDAK----LLLPYAEAVQHNAEGYLKFTVSVGIGSFDRDIRHFRPSFQEAEKALNA 295 Query: 290 SVL-GQAVVLDQ-EAVRQWSGVREPAALDIADMVQKLVAALFKQDAGETGGLVSEMLQFF 347 G A + D EA + L+ V + A+ K + G + + L Sbjct: 296 KFYEGSAKITDYLEAAEEEDFTHTSYPLESEKAV---LQAIVKGEEALIRGSLQDFLASL 352 Query: 348 RRESYLLHEIM-TVYEELFALLRQRLRKSGITGMDYGRQVPDLYLYNSYEALEELIRKDM 406 + ES + ++Y FAL R + ++ +G + ++ + LE ++ Sbjct: 353 QPESSSKENVSNSIYALYFALYRDCIERNVNVMEVFGSGLNEIPRMMARSGLEHIVATLT 412 Query: 407 ADLLELIEQ-NGTDRSYWIVEKAKRYIEAQYRTDLKASEVAAWLKITPSYFSYIFKQSTG 465 L++ +Q + + E Y+ +R D+ VA + +TP Y SY+FKQ Sbjct: 413 DTALKIADQLSARKNGNKLFESILAYVHEHFRLDISRESVAREVYVTPGYISYLFKQQMQ 472 Query: 466 KGFTEYMNELRIEQAKALLASTHDKVFEIADQVGYKEYKYFVTVFKSYTGMTPKEYRG 523 F EY++ +RIE A LL ++ +IA + GY++ KYF VFK +TGMTP +YR Sbjct: 473 TSFIEYLHRIRIEYASRLLKDPSLRISDIAHESGYQDEKYFFQVFKKHTGMTPTQYRN 530 >C2H7P8.1 C2H7P8_ENTFC Response regulator Length = 481 Score = 156 bits (394), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 140/528 (26%), Positives = 234/528 (44%), Gaps = 65/528 (12%) Query: 13 KMLIVDDEPIICKGLRLTIDWAALGIEVIGEAYDGEEALQVMANTEVDFLLSDIRMEGMD 72 ++L+VDDE +I GL+ IDW +LG +++ A + +E L V+ +D +++D+ M ++ Sbjct: 3 QVLLVDDEYMILNGLKKIIDWKSLGFQIVATAENAKEGLSVLEQQRIDLVVTDVTMPEIN 62 Query: 73 GLQLAEQVGQRYPEVRMVIISGYEDFDYARQAMRLGVNDYLLKPVNVDELTGVVGKLADE 132 GL+ E + + +I+SGY++FDY ++ M+LG +YL+KPVN EL + K+ Sbjct: 63 GLEFIEAAQKEHHNFEFMILSGYQEFDYLKEGMQLGAVNYLMKPVNKFELIESLKKIKTR 122 Query: 133 IRXXXXXXXXXGGKDEVKL--WLTHMARHGIAYRRAVPPSLQGAQFRILATQLGSFHERY 190 + E+ WL A + + Q RI+ QL H+ Sbjct: 123 LDQQNEQKNQQEIYQELLFSQWLNEELD--EASEEEIIGQISEKQHRIVLIQLSRIHDPL 180 Query: 191 AELGQEKYEQL---QEQWVSRLHQRLSLPG--LRLVSIFDHENLLITLGVSDHWMEPQEW 245 ++++Q+ Q + R+ L L + F EN+ QEW Sbjct: 181 INTWLKEHQQIFYYQRNYGDRILITLLLEADEVDRFCCFVQENI-----------PDQEW 229 Query: 246 RVLLDRLMEEL--IPE----AELHCGVSQVYADATETADRCTEAAELLRYSVLGQAVVLD 299 + + + L IPE A+ + + Q Y D E + Y++ QA + Sbjct: 230 LISIGEETDSLDKIPETFQQAKDNLQLHQFYGDKDEH----------VFYAI--QATI-- 275 Query: 300 QEAVRQWSGVREPAALDIADMVQKLVAALFKQDAGETGGLVSEMLQFFRRESYLLHEIMT 359 +E +S R D QK++ F+Q L + M + R S+LL M Sbjct: 276 KEQTIDFSSFRRVLQNKRLDDAQKMITDFFEQ-----FQLAAMMPEDIRYSSFLL--FME 328 Query: 360 VYEELFALLRQRLRKSGITGMDYGRQVPDLYLYNSYEALEELIRKDMADLLELIEQNGTD 419 + EL L + + GI + + V +L+ LL ++++ Sbjct: 329 IQRELIDLEDEEYLQ-GIEKIHQAKTVQELHQL----------------LLSFVQKHQRQ 371 Query: 420 RSYW-IVEKAKRYIEAQYRTDLKASEVAAWLKITPSYFSYIFKQSTGKGFTEYMNELRIE 478 + Y VEK + Y+ L EV+ L + Y +FK+ T K F+ Y+N LR+E Sbjct: 372 KKYSGNVEKVIEILHQHYQEPLTLKEVSESLHLNVMYLGQLFKKETKKSFSAYLNHLRME 431 Query: 479 QAKALLASTHDKVFEIADQVGYKEYKYFVTVFKSYTGMTPKEYRGLRA 526 +AK LL ++ V EIA ++GY YF +FK G +PKEYR R Sbjct: 432 KAKQLLLHSNQNVNEIASEIGYNNTTYFSKLFKKIVGRSPKEYREKRG 479 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,101,565,262 Number of extensions: 127110221 Number of successful extensions: 450183 Number of sequences better than 1.0e-05: 11550 Number of HSP's gapped: 462136 Number of HSP's successfully gapped: 12279 Length of query: 530 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 389 Effective length of database: 1,732,333,088 Effective search space: 673877571232 Effective search space used: 673877571232 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)