BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0305.0033.p (438 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5G4.1 B3K5G4_9BACI Extracellular solute-binding protein family 1 664 0.0 A4ITD1.1 A4ITD1_GEOTN Sugar ABC transporter sugar-binding protein 341 9e-92 B4BR63.1 B4BR63_9BACI Extracellular solute-binding protein family 1 340 2e-91 Q2BFH8.1 Q2BFH8_9BACI Sugar ABC transporter sugar-binding protein 339 3e-91 Q8ES69.1 Q8ES69_OCEIH Sugar ABC transporter sugar-binding protein 338 6e-91 >B3K5G4.1 B3K5G4_9BACI Extracellular solute-binding protein family 1 Length = 431 Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/394 (79%), Positives = 357/394 (90%) Query: 44 ETVTLNMMHPWTSPNVDNEVYKARIAKFEEEHPNIVIKQDGVPSAQYKTKLRTLAAANNL 103 E VTLN+MHPWTSPNVDNEVYK RIA+FE++HP+I+IKQDGV + +YKTKLRTLAAANNL Sbjct: 37 EKVTLNIMHPWTSPNVDNEVYKERIAEFEKQHPDIIIKQDGVAATEYKTKLRTLAAANNL 96 Query: 104 ADINVVWPGADLEPLVEGSLVEPIDSLMDNWKAILPETALAGFNIGGKQYAIPTKQTFVD 163 +DINVVWPGADL PLV G L+ P+D LMDNWK ILPE ALAGFN G Q+A+PTKQTFVD Sbjct: 97 SDINVVWPGADLAPLVAGDLLMPLDDLMDNWKDILPEDALAGFNQNGSQFAVPTKQTFVD 156 Query: 164 IIYYNKDMFAQVGYTEFPDTYDKLIDAVKKLKAAGITPISLGNKEQWPLQSSYLSIIGDR 223 IIYYNK+MFA VGY +FP TYD+ IDAVKKLK AGITPISLGNKE+WPLQSS+LSIIGDR Sbjct: 157 IIYYNKEMFAGVGYDQFPATYDEFIDAVKKLKEAGITPISLGNKEKWPLQSSFLSIIGDR 216 Query: 224 FTGSDFLSKVMKKEAKFTDPDFVKAISVIDELTKLDAFNTDANNMDSVQGQDYFIQGKAA 283 + GSDFL K++ KEAKFTDP++VKAI+VIDEL+KL AFNTDANNMDSVQGQDYFIQGKAA Sbjct: 217 YVGSDFLQKILNKEAKFTDPEYVKAIAVIDELSKLGAFNTDANNMDSVQGQDYFIQGKAA 276 Query: 284 MHISSSTVDARIRINNDEGAKFGIALFPSVNGGKGDPVKSAGVVQYGIAIKSGLDEKTKA 343 MHISSSTVD RIRINN+EG KFGIALFPSV GG GDPVKSAGVVQYGI+IK GL ++ KA Sbjct: 277 MHISSSTVDGRIRINNEEGDKFGIALFPSVPGGSGDPVKSAGVVQYGISIKKGLSDEKKA 336 Query: 344 AAEEFMKYFVSEDLYKELIRNGVVVPATVEIPEDASPYLKEMLELTSKGTAPVFDSIIPT 403 AAEEF+K+FV+EDLYK+LI GVVVPA VEIPEDASPYLKEMLELT+KGTAPVFDS+IPT Sbjct: 337 AAEEFIKFFVNEDLYKDLISKGVVVPANVEIPEDASPYLKEMLELTNKGTAPVFDSVIPT 396 Query: 404 QVVDVVQNGIQALTVGRGTPEQVAKDAQEAVDQL 437 QV DV+QNG+QALT+GRGTPE++A++ QEA D + Sbjct: 397 QVTDVMQNGLQALTIGRGTPEELAQEVQEAFDSM 430 >A4ITD1.1 A4ITD1_GEOTN Sugar ABC transporter sugar-binding protein Length = 428 Score = 341 bits (874), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 164/392 (41%), Positives = 244/392 (62%) Query: 46 VTLNMMHPWTSPNVDNEVYKARIAKFEEEHPNIVIKQDGVPSAQYKTKLRTLAAANNLAD 105 + L + WT +N VYK I+KF E+H +I I + +P QY+TKLRT AA N L D Sbjct: 36 IELTLWTDWTEDRPENTVYKDMISKFNEQHDDIKIVLETIPHDQYETKLRTQAAGNQLPD 95 Query: 106 INVVWPGADLEPLVEGSLVEPIDSLMDNWKAILPETALAGFNIGGKQYAIPTKQTFVDII 165 + VWPG LVE + P+D ++D WK +PE+ L + + G YAIP+ + +I Sbjct: 96 MMRVWPGERTSVLVESGALLPLDPIIDQWKESIPESILDDYAVKGSYYAIPSNVSLTSLI 155 Query: 166 YYNKDMFAQVGYTEFPDTYDKLIDAVKKLKAAGITPISLGNKEQWPLQSSYLSIIGDRFT 225 +YNK++ + GY++FP TY+ L + L GITPISLGNK WPLQS Y+S I DRFT Sbjct: 156 FYNKELLKKAGYSDFPTTYEDLKKLIVALNKEGITPISLGNKATWPLQSVYISTIADRFT 215 Query: 226 GSDFLSKVMKKEAKFTDPDFVKAISVIDELTKLDAFNTDANNMDSVQGQDYFIQGKAAMH 285 GSDFL V+ + F D +F++A+SVIDELTKL+AFN D N +D ++ FI+G AAMH Sbjct: 216 GSDFLPNVLSGKGSFVDKNFIQALSVIDELTKLNAFNEDMNTIDEATARNEFIKGSAAMH 275 Query: 286 ISSSTVDARIRINNDEGAKFGIALFPSVNGGKGDPVKSAGVVQYGIAIKSGLDEKTKAAA 345 + S I N + G+A P+ GGKG+P +GV GIA+ S L ++ + AA Sbjct: 276 FAGSWAIGPILDNVENIDNIGVAPLPTFEGGKGEPSSISGVAGGGIALSSQLTKEEQEAA 335 Query: 346 EEFMKYFVSEDLYKELIRNGVVVPATVEIPEDASPYLKEMLELTSKGTAPVFDSIIPTQV 405 EF+K++ SE LY+ L++ ++VP VE+ K G APV+D+ +P ++ Sbjct: 336 FEFLKFYYSETLYQNLVKANIIVPVNVEMDSQTPAIFKTANSFVQGGLAPVYDATLPAEL 395 Query: 406 VDVVQNGIQALTVGRGTPEQVAKDAQEAVDQL 437 D++ NG+QA+T+G +P+++AK+ Q+A++++ Sbjct: 396 TDIINNGLQAITLGEKSPKELAKEMQDALEKM 427 >B4BR63.1 B4BR63_9BACI Extracellular solute-binding protein family 1 Length = 428 Score = 340 bits (871), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 164/392 (41%), Positives = 243/392 (61%) Query: 46 VTLNMMHPWTSPNVDNEVYKARIAKFEEEHPNIVIKQDGVPSAQYKTKLRTLAAANNLAD 105 + L + WT +N VYK I+KF E+H +I I + +P QY+TKLRT AA N L D Sbjct: 36 IELTLWTDWTEDRPENTVYKDMISKFNEQHDDIKIVLETIPHDQYETKLRTQAAGNQLPD 95 Query: 106 INVVWPGADLEPLVEGSLVEPIDSLMDNWKAILPETALAGFNIGGKQYAIPTKQTFVDII 165 + VWPG LVE + P+D ++D WK +PE+ L + + G YAIP+ + +I Sbjct: 96 MMRVWPGERTSVLVESGALLPLDPIIDQWKESIPESILDDYAVKGSYYAIPSNVSLTSLI 155 Query: 166 YYNKDMFAQVGYTEFPDTYDKLIDAVKKLKAAGITPISLGNKEQWPLQSSYLSIIGDRFT 225 +YNK++ + GY++FP TY+ L + L GITPISLGNK WPLQS Y+S I DRFT Sbjct: 156 FYNKELLKKAGYSDFPTTYEDLKKLIVALNKEGITPISLGNKATWPLQSVYISTIADRFT 215 Query: 226 GSDFLSKVMKKEAKFTDPDFVKAISVIDELTKLDAFNTDANNMDSVQGQDYFIQGKAAMH 285 GSDFL V+ F D +F++A+SVIDELTKL+AFN D N +D ++ FI+G AAMH Sbjct: 216 GSDFLPNVLSGNGSFVDKNFIQALSVIDELTKLNAFNEDMNTIDEATARNEFIKGSAAMH 275 Query: 286 ISSSTVDARIRINNDEGAKFGIALFPSVNGGKGDPVKSAGVVQYGIAIKSGLDEKTKAAA 345 + S I N + G+A P+ GGKG+P +GV GIA+ S L ++ + AA Sbjct: 276 FAGSWAIGPILDNVENIDNIGVAPLPTFEGGKGEPSSISGVAGGGIALSSQLTKEEQEAA 335 Query: 346 EEFMKYFVSEDLYKELIRNGVVVPATVEIPEDASPYLKEMLELTSKGTAPVFDSIIPTQV 405 EF+K++ SE LY+ L++ ++VP VE+ K G APV+D+ +P ++ Sbjct: 336 FEFLKFYYSETLYQNLVKANIIVPVNVEMDSQTPAIFKTANGFVQGGLAPVYDATLPAEL 395 Query: 406 VDVVQNGIQALTVGRGTPEQVAKDAQEAVDQL 437 D++ NG+QA+T+G +P+++AK+ Q+A++++ Sbjct: 396 TDIINNGLQAITLGEKSPKELAKEMQDALEKM 427 >Q2BFH8.1 Q2BFH8_9BACI Sugar ABC transporter sugar-binding protein Length = 424 Score = 339 bits (869), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 163/393 (41%), Positives = 247/393 (62%) Query: 44 ETVTLNMMHPWTSPNVDNEVYKARIAKFEEEHPNIVIKQDGVPSAQYKTKLRTLAAANNL 103 + V L + + WT +N YK + KF EEH +I + + +P QY+TKLRT AA N L Sbjct: 32 DAVELTLWNDWTEDRPENAAYKNMVEKFNEEHDDIEVVIEAIPHDQYETKLRTQAAGNQL 91 Query: 104 ADINVVWPGADLEPLVEGSLVEPIDSLMDNWKAILPETALAGFNIGGKQYAIPTKQTFVD 163 D+ VWPGA + PLVEG+ + ++ ++DNW+ +PE + + + G+ YAIP + Sbjct: 92 PDMFRVWPGARIAPLVEGNALLSLNEIVDNWEGTIPEGIMKDYAVDGEHYAIPGNISETS 151 Query: 164 IIYYNKDMFAQVGYTEFPDTYDKLIDAVKKLKAAGITPISLGNKEQWPLQSSYLSIIGDR 223 +IYYNK++ +Q G+ EFP TY++L ++ L ITPI+LGNK WPLQS Y+S I DR Sbjct: 152 LIYYNKELVSQAGFEEFPKTYEELKSLIEALNGEDITPIALGNKGIWPLQSVYISTIADR 211 Query: 224 FTGSDFLSKVMKKEAKFTDPDFVKAISVIDELTKLDAFNTDANNMDSVQGQDYFIQGKAA 283 FTGSDFL V+ + F D F+K++ VIDELTK++AFN D N +D Q ++ FI GK A Sbjct: 212 FTGSDFLPNVLNGDGSFEDEQFIKSLEVIDELTKMNAFNADMNTLDEAQARNNFISGKTA 271 Query: 284 MHISSSTVDARIRINNDEGAKFGIALFPSVNGGKGDPVKSAGVVQYGIAIKSGLDEKTKA 343 MH + S I + + G+A FP+ G +GD K AGV GIA+ S L + K Sbjct: 272 MHFAGSWAIGPILDSAENVDNIGVAPFPTFEGAEGDQEKIAGVAGGGIALNSKLSGEEKE 331 Query: 344 AAEEFMKYFVSEDLYKELIRNGVVVPATVEIPEDASPYLKEMLELTSKGTAPVFDSIIPT 403 AA EF+K+F SED+Y++L+ +VVPA +E+ +D + +L G +PV+D+ + Sbjct: 332 AAFEFLKFFYSEDMYQQLLEANIVVPADLEMGDDIPEIFQTANKLAQGGLSPVYDATLTP 391 Query: 404 QVVDVVQNGIQALTVGRGTPEQVAKDAQEAVDQ 436 ++ D++ NG+Q++T+G TPE++A + Q+ ++ Sbjct: 392 ELTDMINNGLQSITLGEKTPEELAAEMQKEAEK 424 >Q8ES69.1 Q8ES69_OCEIH Sugar ABC transporter sugar-binding protein Length = 426 Score = 338 bits (867), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 160/393 (40%), Positives = 250/393 (63%) Query: 46 VTLNMMHPWTSPNVDNEVYKARIAKFEEEHPNIVIKQDGVPSAQYKTKLRTLAAANNLAD 105 + L + + WT +N VYK I KF E++ I I + +P Y+ KLRT AA N L D Sbjct: 33 IELTLWNDWTEDRPENTVYKDIIEKFNEQNEEIQIVNESIPHDDYEIKLRTQAAGNQLPD 92 Query: 106 INVVWPGADLEPLVEGSLVEPIDSLMDNWKAILPETALAGFNIGGKQYAIPTKQTFVDII 165 + VWPG ++PLV+G+ + P++ ++D+W+ ++PE L + + G YAIP+ + ++ Sbjct: 93 MMRVWPGTRVQPLVQGNALLPLNPIIDHWEGMIPEEILQDYAVDGNYYAIPSNISETSLV 152 Query: 166 YYNKDMFAQVGYTEFPDTYDKLIDAVKKLKAAGITPISLGNKEQWPLQSSYLSIIGDRFT 225 +YNK++ ++ GY EFP TY+ +++LK+ +TPISLGNK WPLQS Y+S I DR+T Sbjct: 153 FYNKEIVSEAGYDEFPTTYEGFKSLIEELKSNDVTPISLGNKAIWPLQSVYISGIADRYT 212 Query: 226 GSDFLSKVMKKEAKFTDPDFVKAISVIDELTKLDAFNTDANNMDSVQGQDYFIQGKAAMH 285 GSDFL V+ E F D F+ A+SVIDELTKL+AFN D N +D Q ++ FI+G AMH Sbjct: 213 GSDFLGNVLNGEGTFEDEQFINALSVIDELTKLEAFNEDMNTVDEAQSRNEFIKGSTAMH 272 Query: 286 ISSSTVDARIRINNDEGAKFGIALFPSVNGGKGDPVKSAGVVQYGIAIKSGLDEKTKAAA 345 + S I + ++ G+A FPS GG+GDP K +GV GIA+ S L E + AA Sbjct: 273 FAGSWAIGPIMDSVEDVENIGVAAFPSFEGGEGDPSKISGVAGGGIAVNSNLSEAEQEAA 332 Query: 346 EEFMKYFVSEDLYKELIRNGVVVPATVEIPEDASPYLKEMLELTSKGTAPVFDSIIPTQV 405 EF+K++ SE+L+++L++ ++VPA VE+ + K+ + G +PV+D+ + ++ Sbjct: 333 FEFLKFYYSEELFQQLVQANIIVPADVEMDDSIPQVFKDANSMAQNGLSPVYDATLTPEL 392 Query: 406 VDVVQNGIQALTVGRGTPEQVAKDAQEAVDQLN 438 D++ NG+Q++T+G TPE++A + Q D+ N Sbjct: 393 TDIINNGLQSITLGDKTPEELAAEMQAEWDKSN 425 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,459,481,211 Number of extensions: 105071425 Number of successful extensions: 221869 Number of sequences better than 1.0e-05: 1066 Number of HSP's gapped: 221613 Number of HSP's successfully gapped: 1066 Length of query: 438 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 299 Effective length of database: 1,751,175,118 Effective search space: 523601360282 Effective search space used: 523601360282 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)