BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0305.0027.p (694 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFL9.1 B3KFL9_9BACI Histidine kinase HAMP region domain protein 468 e-129 B1DIU9.1 B1DIU9_9BACL Methyl-accepting chemotaxis sensory transd... 360 4e-97 B3KA88.1 B3KA88_9BACI Histidine kinase HAMP region domain protein 233 4e-59 C2UGT0.1 C2UGT0_BACCE Methyl-accepting chemotaxis protein 140 5e-31 B7R8X8.1 B7R8X8_9THEO Methyl-accepting chemotaxis protein signal... 139 7e-31 >B3KFL9.1 B3KFL9_9BACI Histidine kinase HAMP region domain protein Length = 724 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 279/679 (41%), Positives = 416/679 (61%), Gaps = 12/679 (1%) Query: 18 LHPSKSLGVRLFLVFFIATMGIVLSLGYTSYSVARQTIENNALSSNQQTVEQTAEKLDVI 77 ++P+KS+G+RLFL+F A + V+ LGY SY+ A+ TIE NA + NQQT+ QT+EK+D+I Sbjct: 52 MNPAKSVGIRLFLIFLSAIVFFVIVLGYLSYNKAKDTIEKNAANGNQQTIIQTSEKIDII 111 Query: 78 LLRFEDSLGQLFYNRDIQEAVRQGSISTASSAERNSQTERINSELDRWITSVKGVQAVYL 137 L ++E++ Q+FY+ ++Q+ + + + S + + I +L ITS ++A+YL Sbjct: 112 LDKYENAGRQIFYDIELQKLLSEYTDKKLSEYDAFTVERTIRDKLSNQITSDSAIRAIYL 171 Query: 138 VPLKNEFPVSATGTKDNAFMKGIREASWFKQLKEKPHS-LWITQGLKQGDTSGVFHFAKS 196 +P K E +SA + +++ K + E SW+ +LKE +W+ G + F A+S Sbjct: 172 IPSKGEKIISAGQSSESS--KTVLEQSWYAELKEGDKKIMWLPTMQNSG--APYFTIARS 227 Query: 197 MADESGGTG-YIAVCDISTKELDSQLSKVNLGLDSYIQLLTSKDELIASSQQQTDSYLRL 255 + + T Y+ + +++ LD+QL +NLG + +QL+ S + ++ SS + Sbjct: 228 LGSMNDLTSTYVVMFELNASVLDAQLKGINLGENGQLQLI-SPEGIVVSSSDSSIVGSET 286 Query: 256 GGTLFKGLTEASGS--LPTQDEKGKSILAVYGTLQSSGWRVLGVVPSENLVKDAGRILGT 313 T K + + + T+DE+G+++LAVY TL ++ W+++G V + L KDA IL Sbjct: 287 AWTFAKEFPADTKTDDVRTKDEEGRNVLAVYNTLSTNDWKLVGSVQTSELTKDASSILVI 346 Query: 314 TYXXXXXXXXXXXXXGLWMVRMVSRPLSRLRDLMFQGAEGDLRVRTSVASRDEIGQLSSS 373 T G+WMVRM++RP+ +L LM +GA+G+L VRT S+DEIGQLS+S Sbjct: 347 TLIVAAIDVIFAILIGIWMVRMIARPIGKLNLLMKEGAKGNLNVRTDHKSQDEIGQLSAS 406 Query: 374 FNVMMERITELVVHTNETAREVLETADALGNASRKTXXXXXXXXXXXXXXXXXXXSLALE 433 FN MME+IT LV T+ TA+EVL TA L +AS+KT SLA+E Sbjct: 407 FNDMMEQITGLVQQTSNTAQEVLRTAAELSDASKKTAISAKEIAVATEEIANGASSLAVE 466 Query: 434 ADRGNEMTAQISERMDMVISAAREMGSMAHHVGQSSEEGVVKLQELLHQTYTTGTMTDKL 493 A+RG+++T IS++M +V++A EMG A HV SSE G L +LL +T+ T MT + Sbjct: 467 AERGSDLTNNISKQMQIVVTANEEMGKSARHVESSSELGTKHLSDLLDKTHQTEDMTRSM 526 Query: 494 VMKVNDLKDTASSVMKVLEAMQSITQQTNILSLNASIXXXXXXXXXXXFTVVADEIRQLS 553 + KV+ LK+T SSV KVL+ +Q+IT+QTNILSLNA+I F VVADEIRQL+ Sbjct: 527 MHKVDGLKETTSSVAKVLDVLQNITKQTNILSLNATIEAARAGAAGKGFMVVADEIRQLA 586 Query: 554 EQSKRSIAMAAEITDKIMTDMHETVAALSEVSPLFDEQIVSVRNTSEIFVSVQGQMNHFI 613 +QS++SI M ++ITD+IM +M+ETV L + +PLF Q+ +V+ T++IFVSVQ QM FI Sbjct: 587 DQSRQSIDMVSQITDRIMAEMNETVQVLLDANPLFKGQMDAVKETNDIFVSVQQQMVEFI 646 Query: 614 SRLDSVGASIEGLNQSQYVLSDAIXXXXXXXXXXXXXXXXXXXXXXXXXEQQNVSDYLVD 673 RLDSV SI+ LN+SQ VLS+A+ EQQ+VS LV+ Sbjct: 647 DRLDSVTHSIDELNESQNVLSEAM---SNVSAVAEESSATSEEVASLSTEQQSVSSQLVN 703 Query: 674 LSAQLENASSMLKERLSKF 692 LS QLEN S+ LKE LS+F Sbjct: 704 LSTQLENVSNELKETLSRF 722 >B1DIU9.1 B1DIU9_9BACL Methyl-accepting chemotaxis sensory transducer Length = 718 Score = 360 bits (923), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 228/682 (33%), Positives = 374/682 (54%), Gaps = 14/682 (2%) Query: 19 HPSKSLGVRLFLVFFIATMGIVLSLGYTSYSVARQTIENNALSSNQQTVEQTAEKLDVIL 78 +P KS+G +LFL+ F++ + VL +G +YS + +E+ S++ +T+ Q + LD+IL Sbjct: 44 NPLKSVGTKLFLIIFVSIIACVLVVGQMAYSKTKTIVEDKVSSASFETIVQASANLDIIL 103 Query: 79 LRFEDSLGQLFYNRDIQEAVRQGSISTASSAERNSQTERINSELDRWITSVKGVQAVYLV 138 +ED Q+ +++ + V ST + +Q + + L + S K V YL+ Sbjct: 104 KTYEDLSMQIMIDKEFHKLVSTLEDSTEAFDLFEAQKD-LGERLQNAVMSNKAVIGAYLL 162 Query: 139 PLKNEFPVSATGTKDNAFMKGIREASWFKQLKEKPHSL-WI-TQ--GLKQGDTSGVFHFA 194 PL ++ P GT A + ++ WF++ K + WI TQ G D + Sbjct: 163 PLDDKLPTITYGTASVAVAPDLMKSDWFEKTKTSKGGVNWIETQPTGFGTKDKLPSIGLS 222 Query: 195 KSMADES-GGTGYIAVCDISTKELDSQLSKVNLGLDSYIQLLTSKDELIASSQQQTDSYL 253 + M + + YI + +++ +++ + ++LG S I L+ S ++ I++ D+ L Sbjct: 223 RQMNNTTTNAASYILLIELNLEDIQEKYEDISLGEGSKIYLVDSDNKYISAP----DNSL 278 Query: 254 RLGGTLFKGLTEASGSLPTQDEKGKSILAVYGTLQSSGWRVLGVVPSENLVKDAGRILGT 313 G + K + GSL + +G+ +L+V+ TL ++GWR++G +P LVKDAG I Sbjct: 279 IGKGNVVKLNIDEEGSLKEKSTEGEEVLSVFKTLDTAGWRLVGTIPVNELVKDAGVINKM 338 Query: 314 TYXXXXXXXXXXXXXGLWMVRMVSRPLSRLRDLMFQGAEGDLRVRTSVASR-DEIGQLSS 372 T+ G+ ++R ++ PL +R+LM +G G+L VR+++ R DEIGQL Sbjct: 339 TWLIALVAMFIAIAIGMLVIRTIAMPLMAMRNLMNEGERGNLTVRSNITKRKDEIGQLGE 398 Query: 373 SFNVMMERITELVVHTNETAREVLETADALGNASRKTXXXXXXXXXXXXXXXXXXXSLAL 432 SFN MM +IT L T ++A EVL TA L + S+KT SLA+ Sbjct: 399 SFNKMMIQITALAKQTTQSADEVLSTAGELTDVSKKTAISAREISVATEEIASGASSLAV 458 Query: 433 EADRGNEMTAQISERMDMVISAAREMGSMAHHVGQSSEEGVVKLQELLHQTYTTGTMTDK 492 EA+RG+++T I+ +M V+ A M A V ++S++G + L+ +T T MT Sbjct: 459 EAERGSDLTGNINHQMKSVMDATGHMVESAGEVEKASQQGTAYMGLLIQKTGMTEEMTRS 518 Query: 493 LVMKVNDLKDTASSVMKVLEAMQSITQQTNILSLNASIXXXXXXXXXXXFTVVADEIRQL 552 +V KV+ LK + S++K+L+ + ++T+QTNILSLNA+I F VVADEIR+L Sbjct: 519 MVEKVDSLKLSTGSIVKILDVLNNLTKQTNILSLNATIEAARAGAAGKGFMVVADEIRKL 578 Query: 553 SEQSKRSIAMAAEITDKIMTDMHETVAALSEVSPLFDEQIVSVRNTSEIFVSVQGQMNHF 612 ++QS++SI + +IT+ IMT + ETV LS+ PLF EQI SV+ +++F++VQ QM F Sbjct: 579 ADQSRQSIDVVGQITETIMTQIEETVTVLSDAYPLFQEQIGSVKEANQLFLTVQNQMGQF 638 Query: 613 ISRLDSVGASIEGLNQSQYVLSDAIXXXXXXXXXXXXXXXXXXXXXXXXXEQQNVSDYLV 672 + +LDSV SI L+QSQ VL++A+ EQ ++S+ LV Sbjct: 639 VQKLDSVTNSITMLDQSQAVLTEAM---GNVSAVAQQSSATSEEVASLSTEQLSISNGLV 695 Query: 673 DLSAQLENASSMLKERLSKFTV 694 +LS +L+ S LKE LS+F + Sbjct: 696 NLSEKLDAVSRGLKESLSRFKI 717 >B3KA88.1 B3KA88_9BACI Histidine kinase HAMP region domain protein Length = 678 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 188/687 (27%), Positives = 338/687 (49%), Gaps = 22/687 (3%) Query: 15 LTRLHPSKSLGVRLFLVFFIATMGIVLSLGYTSYSVARQTIENNALSSNQQTVEQTAEKL 74 +T+ K++G++LF++FF + + +LG SYS+++ T+ + + ++Q A+KL Sbjct: 3 MTKRFQFKAVGMKLFVIFFTTIVLLSSALGLLSYSISKDTVMDQVSEATSGQMKQAADKL 62 Query: 75 DVILLRFEDSLGQLFYNRDIQEAVRQGSISTASSAERN-SQTE-RINSELDRWITSVKGV 132 D +L ++E + Q + ++E + ++STA R+ +Q E RI +L+ +S K + Sbjct: 63 DFLLAQYEAASRQWALDTVLREDLV--TVSTADIGIRDKTQAENRIREKLNGMASSDKRL 120 Query: 133 QAVYLVP--LKNEFPVSATGTKDNAFMKGIREASWFKQLKEKPHSLWIT---QGLKQGDT 187 Q + LV L+ + ++TG + G++ A + ++ +W +G + + Sbjct: 121 QGMRLVAPNLQAQSSYNSTGYSGMSSSDGVK-AKIDRIIQADGEPVWFPTEIKGFMENEN 179 Query: 188 SGVFHFAKSMAD-ESGGTGYIAVCDISTKELDSQLSKVNLGLDSYIQLLTSKDELIASSQ 246 + + + + ++ Y+ + D+ + + L+ + +G + ++++ + ++ Sbjct: 180 TATMTMGRLLKNLKNPNAQYVLLMDVKDEAVGEVLANLKIGNNGQMRIVAEDNRIV---H 236 Query: 247 QQTDSYLRLGGTL-FKGLTEASGSLPTQDEKGKSILAVYGTLQSSGWRVLGVVPSENLVK 305 + L L + E G T DE+ + VY L+++ W ++G P + V+ Sbjct: 237 DMDPAQLMLPSVITVPSDAEEGGIYYTADEQ----MVVYTPLKTAPWHMVGFAPVSDFVQ 292 Query: 306 DAGRILGTTYXXXXXXXXXXXXXGLWMVRMVSRPLSRLRDLMFQGAEGDLRVRTSVASRD 365 ++L T G +M+R V RPL+++ LM +G +G+LRVRT D Sbjct: 293 ATDKLLAVTLAVIVAAVLVAVLIGYYMMRTVGRPLNQMCSLMEEGEQGNLRVRTEFRRAD 352 Query: 366 EIGQLSSSFNVMMERITELVVHTNETAREVLETADALGNASRKTXXXXXXXXXXXXXXXX 425 EIG+L SFN MM +I+ LV TN +A+EVL TA+ L ASR T Sbjct: 353 EIGRLGQSFNRMMGQISALVDQTNASAKEVLVTAEELAEASRGTSLTAGEIAAAMEQIAQ 412 Query: 426 XXXSLALEADRGNEMTAQISERMDMVISAAREMGSMAHHVGQSSEEGVVKLQELLHQTYT 485 SLA+EA+R N++ I RM V + + + A V + + EG + L+ ++ Sbjct: 413 GSGSLAMEAERENQLAENIGVRMSKVSDTNQVIAAAADRVLRVTGEGAQHMDSLVEKSTR 472 Query: 486 TGTMTDKLVMKVNDLKDTASSVMKVLEAMQSITQQTNILSLNASIXXXXXXXXXXXFTVV 545 + +V LKD +S+ K+LE M IT QTN+LS+NA+I F VV Sbjct: 473 INQVNRAIVQNAEKLKDNTASIHKILELMSEITHQTNVLSINATIEAARAGAAGSGFMVV 532 Query: 546 ADEIRQLSEQSKRSIAMAAEITDKIMTDMHETVAALSEVSPLFDEQIVSVRNTSEIFVSV 605 A+E+R L+++SK SI + I ++ +V AL+ SPLFDEQ+ SV+ +F +V Sbjct: 533 ANEVRSLADRSKESIQTVGAMILDIRHEVQGSVDALTSASPLFDEQLHSVQEAQGVFDNV 592 Query: 606 QGQMNHFISRLDSVGASIEGLNQSQYVLSDAIXXXXXXXXXXXXXXXXXXXXXXXXXEQQ 665 + +M+ ++ + ++E L SQ L+D+I EQ Sbjct: 593 RHEMDALLTEISESTHAVEVLIDSQLALTDSI---SEASSIVQETSAATEEVASMSSEQF 649 Query: 666 NVSDYLVDLSAQLENASSMLKERLSKF 692 VS+ LV LS++LE S L++ L F Sbjct: 650 KVSEKLVGLSSRLEELSEGLRKSLVMF 676 >C2UGT0.1 C2UGT0_BACCE Methyl-accepting chemotaxis protein Length = 660 Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 118/511 (23%), Positives = 229/511 (44%), Gaps = 23/511 (4%) Query: 114 QTERINSELDRWITSVKGVQAVYLVPLKNEFPVSATGTKDNAFMKGIREASWFKQLKEKP 173 Q++ + S+ D++I ++ +Y N+F + G F E+SW+K + Sbjct: 90 QSQNVQSKFDQYIQLHPEIETIYTASSNNQFIHAPVGKIPEGF--NPLESSWYKDAVKAD 147 Query: 174 HSLWITQGLKQGDTSG-VFHFAKSMADESGGTGYIAVCDISTKELDSQLSKVNLGLDSYI 232 + ++ K T V AK AD+SG G D++ K++ + +G ++ Sbjct: 148 GEIIVSSPYKSKSTGNMVIAIAKQNADKSGVIG----VDLNIKDIVKTSKMIKIGKQGFV 203 Query: 233 QLLTSKDELIASSQQQTDSYLRLGGTLFKGLTEASGSLPTQDEKGKSILAVYGTLQSSGW 292 +++ ++ + +L TL L + + T G+ + T + +GW Sbjct: 204 SIVSQDKTIVVHPSLKPGE--KLDKTLVDELYKTEDGVITYSLNGEDRNISFKTNKKTGW 261 Query: 293 RVLGVVPSENLVKDAGRILGTTYXXXXXXXXXXXXXGLWMVRMVSRPLSRLRDLMFQGAE 352 ++ GV+P++ + + I T L++++ + PL +L + ++ Sbjct: 262 KIAGVMPTKEIEEATNPIFYKTLTIIGASLLLGGIVILFILKSIITPLRQLVISAQRISQ 321 Query: 353 GDLRVRTSVASRDEIGQLSSSFNVMMERITELVVHTNETAREVLETADALGNASRKTXXX 412 GDL + + S+DE+GQL SFN M E + ++ N +A V +++ L + + Sbjct: 322 GDLTEKIDIRSKDELGQLGGSFNTMAESLRNIISQINTSAGHVAASSEELTASVEQASVA 381 Query: 413 XXXXXXXXXXXXXXXXSLALEADRGNEMTAQISERMDMVISAAREMGSMAHHVGQSSEEG 472 E + G E+ +++ + V A E+ + + + Q + EG Sbjct: 382 TEQITKEMEEISNSAEVQNNEVESGAELIGEVTRNIQYVAENASEVSASSIYTKQKANEG 441 Query: 473 VVKLQELLHQTYT-------TGTMTDKLVMKVNDLKDTASSVMKVLEAMQSITQQTNILS 525 ++L+ QT T + + +D V+K+ D K + + +LEA+Q+I +QTN+L+ Sbjct: 442 ----EQLVEQTVTQMQSIHHSVSQSDN-VIKLLDKK--SQQIGSILEAIQNIAEQTNLLA 494 Query: 526 LNASIXXXXXXXXXXXFTVVADEIRQLSEQSKRSIAMAAEITDKIMTDMHETVAALSEVS 585 LNA+I F +VADE+R+L+EQS S + +I D+HETV A++EV Sbjct: 495 LNAAIEAARAGEQGRGFAIVADEVRKLAEQSSESSMEIGSLIKEIQADVHETVKAMNEVG 554 Query: 586 PLFDEQIVSVRNTSEIFVSVQGQMNHFISRL 616 I +T + F + N +S++ Sbjct: 555 VEVQSGIKVANDTKQSFYEISKSANDIVSKV 585 >B7R8X8.1 B7R8X8_9THEO Methyl-accepting chemotaxis protein signaling domain protein Length = 689 Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 110/480 (22%), Positives = 212/480 (44%), Gaps = 7/480 (1%) Query: 162 EASWFKQ-LKEKPHSLWITQGLKQGDTSGVFHFAKSMADESGGTGYIAVCDISTKELDSQ 220 E W+K + K +W AK++ D SG + DI+ ++L Sbjct: 158 ERPWYKDAVNAKGEPVWTKPYQDFVSKIPEITIAKAVFDSSGNLKGVVGIDITLEQLSKN 217 Query: 221 LSKVNLGLDSYIQLLTSKDELIASSQQQ---TDSYLRLGGTLFKGLTEASGSLPTQDEKG 277 ++ +N+G Y+ +LT +I ++ T Y G K + E S G Sbjct: 218 IASINIGKTGYLYILTKDGTVIVHPKKDMLFTSIYKYDFG---KKIMETDNSTVYYTFNG 274 Query: 278 KSILAVYGTLQSSGWRVLGVVPSENLVKDAGRILGTTYXXXXXXXXXXXXXGLWMVRMVS 337 A L++ GW+ + +E LV+D +I + +S Sbjct: 275 AYKFASVRNLEAFGWKAAVAMENEELVRDMNKITNFIITVSIVILLIGIVIAYFFSNSIS 334 Query: 338 RPLSRLRDLMFQGAEGDLRVRTSVASRDEIGQLSSSFNVMMERITELVVHTNETAREVLE 397 + ++ M + ++G++ VR V ++DE+G L++SFN M+E I +L+ + V Sbjct: 335 SGIKKVVTAMEEASQGNITVRADVKTKDEVGVLANSFNTMLEGIKKLIFDIKSVSESVNH 394 Query: 398 TADALGNASRKTXXXXXXXXXXXXXXXXXXXSLALEADRGNEMTAQISERMDMVISAARE 457 +A+ L AS + S A EA+ T + + +D + A E Sbjct: 395 SAENLAVASEQAAQATQDVAKAIEEIAQGASSQAKEAEESANATVVLGQLIDSSLKNAEE 454 Query: 458 MGSMAHHVGQSSEEGVVKLQELLHQTYTTGTMTDKLVMKVNDLKDTASSVMKVLEAMQSI 517 + +V S EG+V ++EL+ +T T + + N L + ++ + K++E + +I Sbjct: 455 INHEVENVNMVSNEGLVTIKELIEKTKHTIQANNNVKEATNYLLEKSAEIEKIVETITNI 514 Query: 518 TQQTNILSLNASIXXXXXXXXXXXFTVVADEIRQLSEQSKRSIAMAAEITDKIMTDMHET 577 QTN+LSLNA+I F VVADE+R+L+EQS ++ A + +I + ++ T Sbjct: 515 ADQTNLLSLNAAIEAARAGEAGRGFAVVADEVRKLAEQSSQAARNIANLIAEIQSTINNT 574 Query: 578 VAALSEVSPLFDEQIVSVRNTSEIFVSVQGQMNHFISRLDSVGASIEGLNQSQYVLSDAI 637 + + + +EQ V T ++F + + + +++++ S+ + + + + D+I Sbjct: 575 YRTVEDSTRSIEEQSEVVNTTKDVFEGILNAVKFIVEKIENLTKSLREIEEHKNRIVDSI 634 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.128 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,024,359,140 Number of extensions: 105233662 Number of successful extensions: 299566 Number of sequences better than 1.0e-05: 8657 Number of HSP's gapped: 289888 Number of HSP's successfully gapped: 8662 Length of query: 694 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 551 Effective length of database: 1,713,491,058 Effective search space: 944133572958 Effective search space used: 944133572958 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 135 (56.6 bits)