BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0305.0025.p (341 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9KK55.1 A9KK55_CLOPH Glycosidase PH1107-related 513 e-143 C4IM31.1 C4IM31_CLOBU Putative glycosidase 508 e-142 B1QZ78.1 B1QZ78_CLOBU Putative uncharacterized protein 508 e-142 A8SR08.1 A8SR08_9FIRM Putative uncharacterized protein 499 e-139 A8S9U1.1 A8S9U1_9FIRM Putative uncharacterized protein 494 e-138 >A9KK55.1 A9KK55_CLOPH Glycosidase PH1107-related Length = 340 Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust. Identities = 239/339 (70%), Positives = 279/339 (82%), Gaps = 1/339 (0%) Query: 1 MKEVKLTASQNIPNMPWQDRPAGNDNPVWRHSDNPVIKRNPAKGVARIFNSAVVAYEGSF 60 M +V + ++N+PN+PWQ++P PVWR+S+NP+I+RNP GVARIFNSAV+ Y+G F Sbjct: 1 MSQVTMY-TENLPNIPWQEKPTDCPGPVWRYSENPIIRRNPLPGVARIFNSAVIPYQGEF 59 Query: 61 LGVFRVEDNTTRPHLRMGHSVDGLDWKIDDEPIQFVDEAGEPYMPRYAYDPRLVKVEDTY 120 +GVFR E P L +G+S D + W + E I FV+E GE YMPRYAYDPRL+KVEDTY Sbjct: 60 IGVFRGEQINGVPQLYLGYSKDAIHWTYEKEKIAFVNEKGESYMPRYAYDPRLIKVEDTY 119 Query: 121 YIIWCTDFYGAAIGVAKTRDFKTFISLENPFLPFNRNGVLFPRKINGNFVMLSRPSDSGH 180 YIIWCTDFYGAA+G+AKT DFKTFI LENPF+PFNRNGV+FPRKINGNFV+LSRPSDSGH Sbjct: 120 YIIWCTDFYGAALGLAKTNDFKTFIRLENPFIPFNRNGVMFPRKINGNFVLLSRPSDSGH 179 Query: 181 TPFGDVFLSESPDFVYWGKHRHVMTKGGQGWWQSTKIGGGPAPIETTEGWLMFYHGVTGT 240 TPFGDVF+SESPD VYWGKHRHVMT+G WWQS KIGGG APIET+EGWL+FYHGV GT Sbjct: 180 TPFGDVFVSESPDLVYWGKHRHVMTRGYNQWWQSLKIGGGAAPIETSEGWLLFYHGVIGT 239 Query: 241 CNGLVYSMGAVILDKDEPSKVKYRSKNFVLTPEEWYEERGFVNNVLFPCATLNDAETGRI 300 CNG VYSMGA ILD D PS VKYRS NF+LTPE YEE+GFV NV+FPCA L DA +G+I Sbjct: 240 CNGYVYSMGAAILDIDNPSIVKYRSGNFILTPEMDYEEKGFVANVVFPCAALTDAASGKI 299 Query: 301 AIYYGAADTYVGLAYTTVEEIVNYVIATHEEVGDDAGLG 339 AIYYGAAD+YVGLA+TTV+EIV Y+I H GDD +G Sbjct: 300 AIYYGAADSYVGLAFTTVDEIVTYIIENHVANGDDNTIG 338 >C4IM31.1 C4IM31_CLOBU Putative glycosidase Length = 338 Score = 508 bits (1308), Expect = e-142, Method: Compositional matrix adjust. Identities = 235/331 (70%), Positives = 277/331 (83%) Query: 11 NIPNMPWQDRPAGNDNPVWRHSDNPVIKRNPAKGVARIFNSAVVAYEGSFLGVFRVEDNT 70 N+PNMPWQ++P G + P+WRH++NP+I RNP +GVARIFNSAVV Y G F+GVFR E Sbjct: 8 NLPNMPWQEKPEGFNGPIWRHTENPIIGRNPVEGVARIFNSAVVPYNGEFIGVFRGETIN 67 Query: 71 TRPHLRMGHSVDGLDWKIDDEPIQFVDEAGEPYMPRYAYDPRLVKVEDTYYIIWCTDFYG 130 RPH+ +GHS D ++W+ D E I FVDE G+PY P YAYDPRLVKVED Y++IWC DF G Sbjct: 68 GRPHIYLGHSKDAINWEFDKERINFVDEDGKPYQPLYAYDPRLVKVEDEYFVIWCGDFDG 127 Query: 131 AAIGVAKTRDFKTFISLENPFLPFNRNGVLFPRKINGNFVMLSRPSDSGHTPFGDVFLSE 190 AAIG+AKT DFKTF+ LENPFLPFNRNGVLFP+KI+G +VMLSRPSD+GHTPFGD+FL++ Sbjct: 128 AAIGIAKTTDFKTFVRLENPFLPFNRNGVLFPKKIDGKYVMLSRPSDNGHTPFGDIFLTK 187 Query: 191 SPDFVYWGKHRHVMTKGGQGWWQSTKIGGGPAPIETTEGWLMFYHGVTGTCNGLVYSMGA 250 SPD YWG+HR VM KGG GWWQS KIG GPAPIET EGWL+FYHGVTGTCNGLVYSM A Sbjct: 188 SPDLKYWGEHRIVMQKGGNGWWQSIKIGCGPAPIETDEGWLIFYHGVTGTCNGLVYSMSA 247 Query: 251 VILDKDEPSKVKYRSKNFVLTPEEWYEERGFVNNVLFPCATLNDAETGRIAIYYGAADTY 310 ILDK PSKV YR+ + +LTPEEWYEERGFV+NV+FPCATL DAE+G+IAIYYGAADTY Sbjct: 248 AILDKKCPSKVLYRAGSIMLTPEEWYEERGFVSNVIFPCATLTDAESGKIAIYYGAADTY 307 Query: 311 VGLAYTTVEEIVNYVIATHEEVGDDAGLGKI 341 VGLAYTTVEE V ++ +E +G DA G++ Sbjct: 308 VGLAYTTVEETVKFIKEHNELIGLDATDGRM 338 >B1QZ78.1 B1QZ78_CLOBU Putative uncharacterized protein Length = 338 Score = 508 bits (1308), Expect = e-142, Method: Compositional matrix adjust. Identities = 235/331 (70%), Positives = 277/331 (83%) Query: 11 NIPNMPWQDRPAGNDNPVWRHSDNPVIKRNPAKGVARIFNSAVVAYEGSFLGVFRVEDNT 70 N+PNMPWQ++P G + P+WRH++NP+I RNP +GVARIFNSAVV Y G F+GVFR E Sbjct: 8 NLPNMPWQEKPEGFNGPIWRHTENPIIGRNPVEGVARIFNSAVVPYNGEFIGVFRGETIN 67 Query: 71 TRPHLRMGHSVDGLDWKIDDEPIQFVDEAGEPYMPRYAYDPRLVKVEDTYYIIWCTDFYG 130 RPH+ +GHS D ++W+ D E I FVDE G+PY P YAYDPRLVKVED Y++IWC DF G Sbjct: 68 GRPHIYLGHSKDAINWEFDKERINFVDEDGKPYQPLYAYDPRLVKVEDEYFVIWCGDFDG 127 Query: 131 AAIGVAKTRDFKTFISLENPFLPFNRNGVLFPRKINGNFVMLSRPSDSGHTPFGDVFLSE 190 AAIG+AKT DFKTF+ LENPFLPFNRNGVLFP+KI+G +VMLSRPSD+GHTPFGD+FL++ Sbjct: 128 AAIGIAKTTDFKTFVRLENPFLPFNRNGVLFPKKIDGKYVMLSRPSDNGHTPFGDIFLTK 187 Query: 191 SPDFVYWGKHRHVMTKGGQGWWQSTKIGGGPAPIETTEGWLMFYHGVTGTCNGLVYSMGA 250 SPD YWG+HR VM KGG GWWQS KIG GPAPIET EGWL+FYHGVTGTCNGLVYSM A Sbjct: 188 SPDLKYWGEHRIVMQKGGNGWWQSIKIGCGPAPIETDEGWLIFYHGVTGTCNGLVYSMSA 247 Query: 251 VILDKDEPSKVKYRSKNFVLTPEEWYEERGFVNNVLFPCATLNDAETGRIAIYYGAADTY 310 ILDK PSKV YR+ + +LTPEEWYEERGFV+NV+FPCATL DAE+G+IAIYYGAADTY Sbjct: 248 AILDKKCPSKVLYRAGSIMLTPEEWYEERGFVSNVIFPCATLTDAESGKIAIYYGAADTY 307 Query: 311 VGLAYTTVEEIVNYVIATHEEVGDDAGLGKI 341 VGLAYTTVEE V ++ +E +G DA G++ Sbjct: 308 VGLAYTTVEETVKFIKEHNELIGLDATDGRM 338 >A8SR08.1 A8SR08_9FIRM Putative uncharacterized protein Length = 341 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 234/342 (68%), Positives = 282/342 (82%), Gaps = 4/342 (1%) Query: 1 MKEVKLTASQNIPNMPWQDRPAGN--DNPVWRHSDNPVIKRNPAKGVARIFNSAVVAYEG 58 M EVK+ S+ +PN+PWQDRPA + D P+WR+++NP+I RNPAKGVARIFNSAVV +EG Sbjct: 1 MSEVKMF-SEPVPNVPWQDRPANDNHDAPIWRYTENPIIGRNPAKGVARIFNSAVVPFEG 59 Query: 59 SFLGVFRVEDNTTRPHLRMGHSVDGLDWKIDDEPIQFVDEAGEPYMPRYAYDPRLVKVED 118 F+GVFR E P++ +G S D + W I +E I+FVDE GE +MP YAYDPRLVKVED Sbjct: 60 KFVGVFRGEQVNGIPYIYLGESEDAIHWNISEEKIKFVDENGEEFMPIYAYDPRLVKVED 119 Query: 119 TYYIIWCTDFYGAAIGVAKTRDFKTFISLENPFLPFNRNGVLFPRKINGNFVMLSRPSDS 178 TYY IWC DFYGAAIG+AK++D KTF+ +ENPFLPFNRN VLFPRKINGNFVMLSRPSDS Sbjct: 120 TYYAIWCQDFYGAAIGIAKSKDLKTFVRIENPFLPFNRNAVLFPRKINGNFVMLSRPSDS 179 Query: 179 GHTPFGDVFLSESPDFVYWGKHRHVMTKGGQGWWQSTKIGGGPAPIETTEGWLMFYHGVT 238 GHTPFGD+F+SESPD VYWGKHRHVM K + WW+S KIGGG APIET+EGWL+FYHGV+ Sbjct: 180 GHTPFGDIFVSESPDMVYWGKHRHVMGKSSE-WWESLKIGGGAAPIETSEGWLLFYHGVS 238 Query: 239 GTCNGLVYSMGAVILDKDEPSKVKYRSKNFVLTPEEWYEERGFVNNVLFPCATLNDAETG 298 GTCNG VYS+G ILD D PS VKYR +NF+LTPEEWYEERGFV NV FPCAT++D+E+G Sbjct: 239 GTCNGYVYSIGGAILDIDNPSIVKYRCENFLLTPEEWYEERGFVPNVCFPCATIHDSESG 298 Query: 299 RIAIYYGAADTYVGLAYTTVEEIVNYVIATHEEVGDDAGLGK 340 +IAIYYGAAD+YVGLA+T ++EIV+Y+ + D +G+ Sbjct: 299 KIAIYYGAADSYVGLAFTKLDEIVDYIKSHSVVTTSDTEIGR 340 >A8S9U1.1 A8S9U1_9FIRM Putative uncharacterized protein Length = 339 Score = 494 bits (1272), Expect = e-138, Method: Compositional matrix adjust. Identities = 231/333 (69%), Positives = 274/333 (82%), Gaps = 3/333 (0%) Query: 1 MKEVKLTASQNIPNMPWQDRPAGNDNPVWRHSDNPVIKRNPAKGVARIFNSAVVAYEGSF 60 M VK+ +PN+PWQ++PA PVWR+S+NP+I RNP +GVARIFNSAVV YEG F Sbjct: 1 MSNVKMFCDA-LPNIPWQEKPADVTAPVWRYSENPIIDRNPVEGVARIFNSAVVPYEGKF 59 Query: 61 LGVFRVEDNTTRPHLRMGHSVDGLDWKIDDEPIQFVDEAGEPYMPRYAYDPRLVKVEDTY 120 +GVFR E P++ +G S DG+ W D + I FV+E GEP+MP YAYDPRLVKVEDTY Sbjct: 60 IGVFRGEQVDGIPYIYLGRSEDGIHWNFDKDKIPFVNEKGEPFMPVYAYDPRLVKVEDTY 119 Query: 121 YIIWCTDFYGAAIGVAKTRDFKTFISLENPFLPFNRNGVLFPRKINGNFVMLSRPSDSGH 180 YIIWC DFYGA+IG+AKT DFKTF+ +ENPF+PFNRN VLFPRKING + +LSRPSDSGH Sbjct: 120 YIIWCQDFYGASIGIAKTTDFKTFVRIENPFIPFNRNAVLFPRKINGMYTLLSRPSDSGH 179 Query: 181 TPFGDVFLSESPDFVYWGKHRHVMTKGGQGWWQSTKIGGGPAPIETTEGWLMFYHGVTGT 240 TPFGD+FLS+SPD +WG+HRHVM+KG WW+S KIGGG APIET+EGWL+FYHGVTGT Sbjct: 180 TPFGDIFLSQSPDMEFWGRHRHVMSKGSN-WWESVKIGGGAAPIETSEGWLLFYHGVTGT 238 Query: 241 CNGLVYSMGAVILDKDEPSKVKYRSKNFVLTPEEWYEERGFVNNVLFPCATLNDAETGRI 300 CNG VYS+G ILDKDEPSKV YR NF+LTPE+WYEERGFV NV FPCATL DA+TGRI Sbjct: 239 CNGFVYSIGGAILDKDEPSKVLYRCGNFLLTPEKWYEERGFVPNVCFPCATLQDADTGRI 298 Query: 301 AIYYGAADTYVGLAYTTVEEIVNYVIATHEEVG 333 A+YYG AD+YVGLA+TTV+E+V+Y I TH+ G Sbjct: 299 ALYYGCADSYVGLAFTTVDEVVDY-IKTHDNAG 330 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.139 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,344,160,885 Number of extensions: 108635959 Number of successful extensions: 192220 Number of sequences better than 1.0e-05: 284 Number of HSP's gapped: 191394 Number of HSP's successfully gapped: 285 Length of query: 341 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 205 Effective length of database: 1,779,438,163 Effective search space: 364784823415 Effective search space used: 364784823415 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)