BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0305.0024.p (277 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I8V7.1 B8I8V7_CLOCE Binding-protein-dependent transport system... 369 e-100 C4IM30.1 C4IM30_CLOBU Sugar transport system permease protein 337 8e-91 B1QZ77.1 B1QZ77_CLOBU Sugar transport system permease protein 337 8e-91 C1W442.1 C1W442_9MICO Carbohydrate ABC transporter membrane prot... 329 1e-88 B5GAK6.1 B5GAK6_9ACTO Sugar transport system permease protein 325 3e-87 >B8I8V7.1 B8I8V7_CLOCE Binding-protein-dependent transport systems inner membrane component Length = 278 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 174/277 (62%), Positives = 228/277 (82%) Query: 1 MHTLKYNLASFFKYLTLILGALMALVPIVVVFFASLKTNKEYASTGPLTLPENWLNFSNY 60 M + K N KY+TL++ + +AL+PIVVV F S KT+ EY ++ PL P++WLNFSN+ Sbjct: 1 MASKKINTFDVLKYITLLIASFIALLPIVVVLFISFKTSSEYTNSNPLMPPKDWLNFSNF 60 Query: 61 SKAFIDGNMLLGFMNTIIIVLISIAGATLTGSMMAYILARFRFKGSKLLMGAFLLATLIP 120 AF DG ML GF+NT+II+ + + GA + G+M+AY+L RF+FKGS L++GAFLLATLIP Sbjct: 61 HDAFSDGGMLRGFVNTVIIMAVVLFGAIIIGTMVAYVLDRFKFKGSGLVVGAFLLATLIP 120 Query: 121 GVTTQVATFQIINSLELFNTRWAPILMYLGTDIIAVYIFMQFLDSISESLDESAMLDGAS 180 G+TTQVAT+++IN+L L NTR AP+++ +GTDII++YIF+QF+ +IS +LDESAM++GAS Sbjct: 121 GITTQVATYKVINALHLQNTRLAPMILGVGTDIISIYIFIQFISNISVALDESAMIEGAS 180 Query: 181 YWTIYWRIILPLLSPAIVTVIIVKGVNIYNDFYTPFLYMPKSSLQVVSTALFKFKGPYGS 240 Y+TIY RIILPLL PAI TV+I+KG +YNDFYTP LYMPKSSL VST+L++F+GPYG Sbjct: 181 YFTIYRRIILPLLKPAIATVVIIKGTGVYNDFYTPLLYMPKSSLGTVSTSLYRFQGPYGG 240 Query: 241 QWEVICAAIMIAIIPTLIAFIALQKYIYNGFAQGSVK 277 +WEVICA ++IAIIPTLIAFI+LQKY YNGF GSVK Sbjct: 241 RWEVICAGVIIAIIPTLIAFISLQKYFYNGFTGGSVK 277 >C4IM30.1 C4IM30_CLOBU Sugar transport system permease protein Length = 282 Score = 337 bits (863), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 164/274 (59%), Positives = 215/274 (78%), Gaps = 3/274 (1%) Query: 4 LKYNLASFFKYLTLILGALMALVPIVVVFFASLKTNKEYASTGPLTLPENWLNFSNYSKA 63 L YN+ KY LIL ++ ++PI+ V FAS KT EYAST LTLPE++ NF N+ +A Sbjct: 11 LIYNIC---KYAFLILLVIVFILPILTVLFASFKTGTEYASTSVLTLPESFFNFDNFIEA 67 Query: 64 FIDGNMLLGFMNTIIIVLISIAGATLTGSMMAYILARFRFKGSKLLMGAFLLATLIPGVT 123 F GNML GF NT+II++ S+AGA LTGSM AY+ +RF+ K +K + G FL+A +IP + Sbjct: 68 FTKGNMLNGFKNTVIILIFSLAGAVLTGSMAAYVFSRFKSKFTKFVNGMFLVAVMIPAIA 127 Query: 124 TQVATFQIINSLELFNTRWAPILMYLGTDIIAVYIFMQFLDSISESLDESAMLDGASYWT 183 TQVATFQII++L LFNTR API++Y+GTDI+ +YIF+QFLD+IS SLDESA++DGA+Y+ Sbjct: 128 TQVATFQIISALGLFNTRLAPIILYIGTDIMTIYIFLQFLDNISVSLDESAIIDGANYFQ 187 Query: 184 IYWRIILPLLSPAIVTVIIVKGVNIYNDFYTPFLYMPKSSLQVVSTALFKFKGPYGSQWE 243 I+++IILPLLSPA++TV+I KGV +YNDFYTPFLY P + L +ST LFKFKGP+G+ WE Sbjct: 188 IFFKIILPLLSPAVITVLITKGVGLYNDFYTPFLYTPSADLLTLSTTLFKFKGPFGAHWE 247 Query: 244 VICAAIMIAIIPTLIAFIALQKYIYNGFAQGSVK 277 VI A I++ +IPTLI F+ LQK IY+G GSVK Sbjct: 248 VISAGIIVVMIPTLIVFLTLQKQIYSGLVSGSVK 281 >B1QZ77.1 B1QZ77_CLOBU Sugar transport system permease protein Length = 282 Score = 337 bits (863), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 164/274 (59%), Positives = 215/274 (78%), Gaps = 3/274 (1%) Query: 4 LKYNLASFFKYLTLILGALMALVPIVVVFFASLKTNKEYASTGPLTLPENWLNFSNYSKA 63 L YN+ KY LIL ++ ++PI+ V FAS KT EYAST LTLPE++ NF N+ +A Sbjct: 11 LIYNIC---KYAFLILLVIVFILPILTVLFASFKTGTEYASTSVLTLPESFFNFDNFIEA 67 Query: 64 FIDGNMLLGFMNTIIIVLISIAGATLTGSMMAYILARFRFKGSKLLMGAFLLATLIPGVT 123 F GNML GF NT+II++ S+AGA LTGSM AY+ +RF+ K +K + G FL+A +IP + Sbjct: 68 FTKGNMLNGFKNTVIILIFSLAGAVLTGSMAAYVFSRFKSKFTKFVNGMFLVAVMIPAIA 127 Query: 124 TQVATFQIINSLELFNTRWAPILMYLGTDIIAVYIFMQFLDSISESLDESAMLDGASYWT 183 TQVATFQII++L LFNTR API++Y+GTDI+ +YIF+QFLD+IS SLDESA++DGA+Y+ Sbjct: 128 TQVATFQIISALGLFNTRLAPIILYIGTDIMTIYIFLQFLDNISVSLDESAIIDGANYFQ 187 Query: 184 IYWRIILPLLSPAIVTVIIVKGVNIYNDFYTPFLYMPKSSLQVVSTALFKFKGPYGSQWE 243 I+++IILPLLSPA++TV+I KGV +YNDFYTPFLY P + L +ST LFKFKGP+G+ WE Sbjct: 188 IFFKIILPLLSPAVITVLITKGVGLYNDFYTPFLYTPSADLLTLSTTLFKFKGPFGAHWE 247 Query: 244 VICAAIMIAIIPTLIAFIALQKYIYNGFAQGSVK 277 VI A I++ +IPTLI F+ LQK IY+G GSVK Sbjct: 248 VISAGIIVVMIPTLIVFLTLQKQIYSGLVSGSVK 281 >C1W442.1 C1W442_9MICO Carbohydrate ABC transporter membrane protein 2, CUT1 family Length = 273 Score = 329 bits (844), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 152/274 (55%), Positives = 212/274 (77%), Gaps = 1/274 (0%) Query: 4 LKYNLASFFKYLTLILGALMALVPIVVVFFASLKTNKEYASTGPLTLPENWLNFSNYSKA 63 +K A+ KY +LI+ L+ L+PI V+F A+ KT +E+ TGP +P+++ N N+ A Sbjct: 1 MKQITATTLKYFSLIVACLVTLLPIGVIFMAAFKTKQEFRDTGPFDVPQSF-NLDNFVTA 59 Query: 64 FIDGNMLLGFMNTIIIVLISIAGATLTGSMMAYILARFRFKGSKLLMGAFLLATLIPGVT 123 F G M+ GF+NT+II+ ++I G + G+M AY + RFRF+G L++G FLLATL+P VT Sbjct: 60 FTKGQMVQGFVNTVIILAVAITGTIIIGTMAAYAIDRFRFRGRTLVLGGFLLATLVPAVT 119 Query: 124 TQVATFQIINSLELFNTRWAPILMYLGTDIIAVYIFMQFLDSISESLDESAMLDGASYWT 183 TQVATFQ+INSL L+NTR A +L+++GTDI+++YIF+QF+ SI +SLDE+A+LDGA++ T Sbjct: 120 TQVATFQVINSLGLYNTRAAVMLLFMGTDIVSIYIFVQFMRSIDKSLDEAAVLDGANHLT 179 Query: 184 IYWRIILPLLSPAIVTVIIVKGVNIYNDFYTPFLYMPKSSLQVVSTALFKFKGPYGSQWE 243 IY RIILPLL PAI TV+I+KG+ IYN+FY PFLYMP L V+ST+LF+FKGP+G+QWE Sbjct: 180 IYGRIILPLLKPAIATVVIIKGIAIYNEFYIPFLYMPSRDLGVISTSLFRFKGPFGAQWE 239 Query: 244 VICAAIMIAIIPTLIAFIALQKYIYNGFAQGSVK 277 VI A ++I +IPTL+ F+ LQ+YIYNG G+ K Sbjct: 240 VISAGVIIVLIPTLLLFLFLQRYIYNGLTSGATK 273 >B5GAK6.1 B5GAK6_9ACTO Sugar transport system permease protein Length = 295 Score = 325 bits (832), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 152/271 (56%), Positives = 206/271 (76%) Query: 7 NLASFFKYLTLILGALMALVPIVVVFFASLKTNKEYASTGPLTLPENWLNFSNYSKAFID 66 LA+ KY TL+L + + +VP+ + SL+T KE + L LP +WLNF NY+ AF D Sbjct: 25 RLATALKYATLVLASAVVVVPLAAILLTSLRTGKEVSKDPGLALPHDWLNFHNYTVAFTD 84 Query: 67 GNMLLGFMNTIIIVLISIAGATLTGSMMAYILARFRFKGSKLLMGAFLLATLIPGVTTQV 126 G+M+ +NT I++ S+AG L GSM AY + RF F+ KL++GAFL+A+L+P VTTQV Sbjct: 85 GHMVRALLNTAFILVFSVAGTVLIGSMTAYAVDRFHFRFKKLVLGAFLVASLVPSVTTQV 144 Query: 127 ATFQIINSLELFNTRWAPILMYLGTDIIAVYIFMQFLDSISESLDESAMLDGASYWTIYW 186 AT++I+N+L + +TRWAP+L+Y+GTDI+++YIF+QF+ SI SLDE+A LDGAS +TIY Sbjct: 145 ATYRIVNNLGVMDTRWAPVLLYMGTDIVSIYIFLQFIRSIPVSLDEAARLDGASSFTIYR 204 Query: 187 RIILPLLSPAIVTVIIVKGVNIYNDFYTPFLYMPKSSLQVVSTALFKFKGPYGSQWEVIC 246 RIILPLL PA+ TV+IVKGV IYNDFY PFLYMP L +ST+LF+FKGPYG+ WEVI Sbjct: 205 RIILPLLKPAVATVVIVKGVAIYNDFYIPFLYMPSEDLGTISTSLFRFKGPYGAHWEVIS 264 Query: 247 AAIMIAIIPTLIAFIALQKYIYNGFAQGSVK 277 A + I+P+L+ F+ALQ++IYNGFA G+ K Sbjct: 265 AGAALVIVPSLLVFLALQRFIYNGFAAGATK 295 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.141 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,513,256,901 Number of extensions: 58696801 Number of successful extensions: 255526 Number of sequences better than 1.0e-05: 6959 Number of HSP's gapped: 247715 Number of HSP's successfully gapped: 6965 Length of query: 277 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 143 Effective length of database: 1,798,280,193 Effective search space: 257154067599 Effective search space used: 257154067599 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)