BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0305.0023.p (293 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1W441.1 C1W441_9MICO Carbohydrate ABC transporter membrane prot... 341 4e-92 Q02YI5.1 Q02YI5_LACLS ABC-type sugar transport system, permease ... 305 2e-81 B8I8V8.1 B8I8V8_CLOCE Binding-protein-dependent transport system... 303 1e-80 B5HTF8.1 B5HTF8_9ACTO Sugar transport system permease protein 296 2e-78 O86595.1 O86595_STRCO Putative sugar transport system permease p... 294 5e-78 >C1W441.1 C1W441_9MICO Carbohydrate ABC transporter membrane protein 1, CUT1 family Length = 273 Score = 341 bits (875), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 166/262 (63%), Positives = 208/262 (79%) Query: 32 SYLPVFKMFQYSFTSWNGFSKNMEYVGFDNYKTIFTKPEYFAVFKVSLYYFFATFVQMGL 91 +Y PV MF YS T W+G +K E+VG DN+ T+FTKPEYFAVFKVSLYYFFA+FVQMG+ Sbjct: 8 TYYPVINMFWYSVTDWDGLAKTKEFVGADNFITVFTKPEYFAVFKVSLYYFFASFVQMGI 67 Query: 92 ALYFATILSFNVRMKNWFKGILFFPTLLNGVAIGFIFLFFFKPEGTLNTILDLVGLGAWQ 151 ALYFATILSFN R KN+FKG+LFFP L+NGVAIGFIFL+FF+P+GTL+ ++ ++GLG Sbjct: 68 ALYFATILSFNTRFKNFFKGVLFFPYLINGVAIGFIFLYFFRPDGTLDALMGILGLGEHT 127 Query: 152 QKWLLNPQLINISLAFASVWRYMGMNFIIFLGAISSIGGDIYEASEIDGANRWHQFRHII 211 Q WL N + N SLA SVWRY G+NF++FLGAI SI G+IYEA+EIDGAN+WHQF +II Sbjct: 128 QHWLGNRDIANYSLAATSVWRYTGLNFVLFLGAIQSIPGEIYEAAEIDGANKWHQFLYII 187 Query: 212 IPSIKRILQLNLILAVSGAIGVFEIPYVMTGGSNGSGTFVIQTVDVAFKYSKLGLASAMA 271 PSI+ I+ L+ ILA+SG++ VFEIP+VMTGG+NG+ TFVI+TVD AFK++K+G ASAMA Sbjct: 188 APSIRPIIGLSFILAISGSLSVFEIPFVMTGGANGTETFVIKTVDTAFKFNKVGQASAMA 247 Query: 272 XXXXXXXXXXXXXQRVLIKEEK 293 Q+ L+ EEK Sbjct: 248 VVLLAIVLVVTWIQKRLVPEEK 269 >Q02YI5.1 Q02YI5_LACLS ABC-type sugar transport system, permease component Length = 317 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 156/290 (53%), Positives = 203/290 (70%), Gaps = 1/290 (0%) Query: 4 LSNMSYKNQRXXXXXXXXXXXXXXXXXXSYLPVFKMFQYSFTSWNGFSKNMEYVGFDNYK 63 L+ +S K Q+ SY P+ KM QYS T WNG S + +V F+NY+ Sbjct: 21 LNKLSQKAQKRLIIFAFTIVPLVLLLMFSYYPLVKMVQYSLTDWNGISPSSNFVDFENYE 80 Query: 64 TIFTKPEYFAVFKVSLYYFFATFVQMGLALYFATILSFNVRMKNWFKGILFFPTLLNGVA 123 +F+ P YF VFK SLYYF ++F Q+GLAL FATILSF V+ N++KGILFFP LLNGVA Sbjct: 81 KVFSNPNYFGVFKTSLYYFLSSFPQLGLALLFATILSFKVKFANFWKGILFFPYLLNGVA 140 Query: 124 IGFIFLFFFKPEGTLNTILDLVGLGAWQQKWLLNPQLINISLAFASVWRYMGMNFIIFLG 183 IGF+FL+F+ GTL+++L LVG+ WL N + NISL+F S+WRYMG NF+IFLG Sbjct: 141 IGFMFLYFYITGGTLDSLLHLVGI-QHVPLWLGNQSINNISLSFVSIWRYMGFNFLIFLG 199 Query: 184 AISSIGGDIYEASEIDGANRWHQFRHIIIPSIKRILQLNLILAVSGAIGVFEIPYVMTGG 243 AI S+ +IYEA+EIDGANRW+QFR IIIP+I+ IL LN+IL+VSG++ VFE+PY+MTGG Sbjct: 200 AIQSVDPEIYEAAEIDGANRWNQFRFIIIPAIRNILFLNIILSVSGSLSVFEVPYIMTGG 259 Query: 244 SNGSGTFVIQTVDVAFKYSKLGLASAMAXXXXXXXXXXXXXQRVLIKEEK 293 +NG+ TFVIQTV AF Y+++GLASAMA Q +L ++ Sbjct: 260 ANGTMTFVIQTVQTAFNYNQVGLASAMAVILLIIVVVVSAAQFILTQDRS 309 >B8I8V8.1 B8I8V8_CLOCE Binding-protein-dependent transport systems inner membrane component Length = 295 Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 147/289 (50%), Positives = 200/289 (69%) Query: 5 SNMSYKNQRXXXXXXXXXXXXXXXXXXSYLPVFKMFQYSFTSWNGFSKNMEYVGFDNYKT 64 SN+SYK Q+ SY P +F YS T W+G SK E+VG NY Sbjct: 3 SNLSYKVQKRIIIVAFLIIPLLLLAVFSYFPALNLFYYSLTKWDGISKTKEFVGLRNYVD 62 Query: 65 IFTKPEYFAVFKVSLYYFFATFVQMGLALYFATILSFNVRMKNWFKGILFFPTLLNGVAI 124 +F+K E F VFK SLYY + +Q+GLALYF++ILS+ VR K++FKG+LFFP LLNGVA+ Sbjct: 63 LFSKQENFIVFKNSLYYLGGSVIQIGLALYFSSILSYKVRFKSFFKGVLFFPYLLNGVAV 122 Query: 125 GFIFLFFFKPEGTLNTILDLVGLGAWQQKWLLNPQLINISLAFASVWRYMGMNFIIFLGA 184 F+F+ FF+PEGT+++++ +GLGA+ QKWL NP +IN SL S+WR+ G NFI+F GA Sbjct: 123 SFMFMLFFRPEGTMDSLITAIGLGAYTQKWLGNPGIINFSLVAVSIWRFFGYNFILFSGA 182 Query: 185 ISSIGGDIYEASEIDGANRWHQFRHIIIPSIKRILQLNLILAVSGAIGVFEIPYVMTGGS 244 I S+ ++YEA+EIDGANR+ QF ++ +P IKR+++LN+IL++SG+I FE+PY+MTGGS Sbjct: 183 IQSVPAEMYEATEIDGANRFQQFWYVTLPFIKRVIELNVILSISGSISAFEVPYIMTGGS 242 Query: 245 NGSGTFVIQTVDVAFKYSKLGLASAMAXXXXXXXXXXXXXQRVLIKEEK 293 NGS TFVI+TV+ AFK+ K GLASAM Q+ L + K Sbjct: 243 NGSMTFVIRTVESAFKWRKYGLASAMGIVLLIIVVLTTLLQKKLFGDNK 291 >B5HTF8.1 B5HTF8_9ACTO Sugar transport system permease protein Length = 302 Score = 296 bits (757), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 144/262 (54%), Positives = 193/262 (73%), Gaps = 1/262 (0%) Query: 32 SYLPVFKMFQYSFTSWNGFSKNMEYVGFDNYKTIFTKPEYFAVFKVSLYYFFATFVQMGL 91 +Y P+ M YSFT W+G S + Y G +NY+ +FT+P+ F VF VS YY A+ VQ+ L Sbjct: 38 TYAPIVNMLAYSFTDWDGVSPVLHYTGTENYQEVFTRPDLFEVFWVSGYYLAASAVQIVL 97 Query: 92 ALYFATILSFNVRMKNWFKGILFFPTLLNGVAIGFIFLFFFKPEGTLNTILDLVGLGAWQ 151 ALYFAT+LSFNVR +N+FKG+LFFP L+NGVAIGF+FL+FF+ GTL+++L L G+ Sbjct: 98 ALYFATVLSFNVRFRNFFKGVLFFPYLINGVAIGFVFLYFFQDGGTLDSVLSLFGVHT-D 156 Query: 152 QKWLLNPQLINISLAFASVWRYMGMNFIIFLGAISSIGGDIYEASEIDGANRWHQFRHII 211 WL P N SLA SVWRY+G+NF++FLGAI SI G++YEA+E+DGA RWHQFR+II Sbjct: 157 HAWLGTPASANTSLAGVSVWRYLGLNFVLFLGAIQSIPGELYEAAELDGAGRWHQFRYII 216 Query: 212 IPSIKRILQLNLILAVSGAIGVFEIPYVMTGGSNGSGTFVIQTVDVAFKYSKLGLASAMA 271 P IK +L L +IL++SG++ VFEIPY+MTGG+ G+ TFVIQTV++AF+++K GLASA A Sbjct: 217 APGIKPVLTLTVILSISGSLSVFEIPYIMTGGATGTETFVIQTVNLAFRFNKTGLASAAA 276 Query: 272 XXXXXXXXXXXXXQRVLIKEEK 293 QR L+ ++K Sbjct: 277 VVLLLIILLVTWVQRRLVPDDK 298 >O86595.1 O86595_STRCO Putative sugar transport system permease protein Length = 324 Score = 294 bits (753), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 142/262 (54%), Positives = 190/262 (72%), Gaps = 1/262 (0%) Query: 32 SYLPVFKMFQYSFTSWNGFSKNMEYVGFDNYKTIFTKPEYFAVFKVSLYYFFATFVQMGL 91 +Y+PV M YSFT W+G S + +YVG +NY IFT+PE VF VS YY A+ VQ+ + Sbjct: 60 TYVPVGNMIYYSFTDWDGVSPDRDYVGAENYTEIFTRPELLRVFAVSFYYLAASVVQIVI 119 Query: 92 ALYFATILSFNVRMKNWFKGILFFPTLLNGVAIGFIFLFFFKPEGTLNTILDLVGLGAWQ 151 ALYFA +LSF++R +N FKGILFFP L+NGVAIGF+FL+FF+ GTL+++L G G Sbjct: 120 ALYFAAVLSFDLRFRNLFKGILFFPYLINGVAIGFVFLYFFQDGGTLDSVLSWFGAGT-D 178 Query: 152 QKWLLNPQLINISLAFASVWRYMGMNFIIFLGAISSIGGDIYEASEIDGANRWHQFRHII 211 WL +P+ N S+A SVWR+ G+NF++FLGAI SI G++YEA+++DGA RW QFRHII Sbjct: 179 HAWLGSPESANTSMAGVSVWRFTGLNFVLFLGAIQSIPGELYEAAQLDGAGRWKQFRHII 238 Query: 212 IPSIKRILQLNLILAVSGAIGVFEIPYVMTGGSNGSGTFVIQTVDVAFKYSKLGLASAMA 271 PSI+ +L L++ILA+SG++ VFEIPY+MTGG+ + TFVIQTV AF+++K GLASA A Sbjct: 239 APSIRPVLSLSVILAISGSLSVFEIPYIMTGGATETSTFVIQTVKYAFQFNKTGLASACA 298 Query: 272 XXXXXXXXXXXXXQRVLIKEEK 293 QR L+ +EK Sbjct: 299 VVLLAIILLITWIQRRLVPDEK 320 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.142 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,537,955,692 Number of extensions: 63307277 Number of successful extensions: 212072 Number of sequences better than 1.0e-05: 5592 Number of HSP's gapped: 207133 Number of HSP's successfully gapped: 5592 Length of query: 293 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 159 Effective length of database: 1,798,280,193 Effective search space: 285926550687 Effective search space used: 285926550687 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)