BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0305.0021.p (451 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6J2.1 B3K6J2_9BACI FAD dependent oxidoreductase 594 e-168 B3KER0.1 B3KER0_9BACI Putative uncharacterized protein 558 e-157 A6PNA6.1 A6PNA6_9BACT FAD dependent oxidoreductase 253 3e-65 C3QRN7.1 C3QRN7_9BACE FAD dependent oxidoreductase 245 8e-63 A7LWF2.1 A7LWF2_BACOV Putative uncharacterized protein 242 5e-62 >B3K6J2.1 B3K6J2_9BACI FAD dependent oxidoreductase Length = 450 Score = 594 bits (1531), Expect = e-168, Method: Compositional matrix adjust. Identities = 276/442 (62%), Positives = 349/442 (78%) Query: 2 KTITVPADQIPVSREVEVLVXXXXXXXXXXXXXXXXXXXSVLIVEQRGYLGGMGTAALVP 61 +T T+P +++P+ +V+V+V + L++EQRG+LGGMGT ALVP Sbjct: 5 RTWTLPPEELPIMNQVDVVVVGGGPTGIAAAIAAANNGANTLLIEQRGFLGGMGTTALVP 64 Query: 62 AFCPYTDHEKPVVRGIGLELLESMKQACGPDYMSRYGEQLDWVPIDAEVLKRVYEAKVLE 121 AFCP+TDHEKPV+RGIGLEL+E MK C P Y++ Y EQLDWVPID EVLKRVY+ +LE Sbjct: 65 AFCPFTDHEKPVIRGIGLELMERMKANCKPSYITEYKEQLDWVPIDVEVLKRVYDEALLE 124 Query: 122 SGAGLLYHTVVSQVVMGADGSRVDGVVIVNKSGRSYIGCRYVIDATGDADIAAMSGVAFQ 181 SGA +L+HT V Q+VM G V+G+V++NKSGRS + +YVIDATGDADIAA++G FQ Sbjct: 125 SGAKVLFHTFVGQLVMNPGGHGVNGLVLLNKSGRSIVEAKYVIDATGDADIAALAGAPFQ 184 Query: 182 KGGEQGELQPGTLCYVLSDVSYSRFHEYLKRTGDTGQIPALVQKAQAAGDLPQGRKEVSG 241 KGG+ GELQPGT+CY+L++V+ RF +Y++ +GDTGQIP VQ AQ+ GDLP GRKEVSG Sbjct: 185 KGGDAGELQPGTMCYLLTNVNRERFRQYMRDSGDTGQIPQAVQLAQSNGDLPPGRKEVSG 244 Query: 242 FSWISDTLVGVNFGHIFGIDGTQAEDLTRGAIEGRQGIKVQLDFLRKYVPGFEQAHLVTS 301 F+W+SD LVGVNFGH+FG+DGT+AEDLT+ A+EGR+ + +Q++FLRKYVPGFE AHLV++ Sbjct: 245 FAWVSDYLVGVNFGHVFGVDGTKAEDLTKAAVEGRKLVNIQVEFLRKYVPGFEDAHLVST 304 Query: 302 GEQIGIRETRRITGDYTLVKEDFMSMKSFPDDIARNSYFIDVHLADSQSQMDIQHLPSGR 361 GEQIGIRETRRI GDY LV++DF+SM+SF DDIARN+YFID+H+A S+ M+I HLP GR Sbjct: 305 GEQIGIRETRRIVGDYMLVQDDFISMRSFEDDIARNAYFIDIHMATSKENMEIHHLPPGR 364 Query: 362 SHGVPYRALLPVGVDNLWVAGRAASSDRVVQGSLRVMPNCFXXXXXXXXXXXXXXXSSMT 421 SHGVPYR+LLP G+ N+WVAGRAAS+DRVVQGSLRVMPNCF + T Sbjct: 365 SHGVPYRSLLPQGLANVWVAGRAASADRVVQGSLRVMPNCFAMGQAAGTAAAICAMTGST 424 Query: 422 SREVPIRELQNLLVRQGAWLGE 443 SREV I++LQ LL+ QGAWLGE Sbjct: 425 SREVDIKQLQRLLIEQGAWLGE 446 >B3KER0.1 B3KER0_9BACI Putative uncharacterized protein Length = 458 Score = 558 bits (1438), Expect = e-157, Method: Compositional matrix adjust. Identities = 262/441 (59%), Positives = 322/441 (73%) Query: 4 ITVPADQIPVSREVEVLVXXXXXXXXXXXXXXXXXXXSVLIVEQRGYLGGMGTAALVPAF 63 IT+P+ IPVSREV+VLV ++VEQRG+LGGMGT ALVPAF Sbjct: 5 ITLPSASIPVSREVDVLVIGGGASGIAAAIAAAKGGAKTMLVEQRGFLGGMGTVALVPAF 64 Query: 64 CPYTDHEKPVVRGIGLELLESMKQACGPDYMSRYGEQLDWVPIDAEVLKRVYEAKVLESG 123 CP+TD KP++RG+GL+L+E MKQAC P Y+ Y E LDWVPID EVLKRVY+ +LESG Sbjct: 65 CPFTDKRKPIIRGLGLQLMERMKQACDPQYLEEYQEMLDWVPIDPEVLKRVYDDAILESG 124 Query: 124 AGLLYHTVVSQVVMGADGSRVDGVVIVNKSGRSYIGCRYVIDATGDADIAAMSGVAFQKG 183 LYHT V VV D +V+GVV+VNK+GRS+I CRY+ID +GD DIAA++G FQKG Sbjct: 125 VTPLYHTFVYDVVRSEDRRKVEGVVVVNKTGRSFIPCRYIIDCSGDGDIAALAGAPFQKG 184 Query: 184 GEQGELQPGTLCYVLSDVSYSRFHEYLKRTGDTGQIPALVQKAQAAGDLPQGRKEVSGFS 243 GE GELQPG++CY+L++V RF YL+ +GDTGQ+ V+ A G LP+GRK +SG + Sbjct: 185 GEAGELQPGSMCYLLANVDRPRFTRYLEESGDTGQLHKTVELAIEDGALPEGRKSISGLA 244 Query: 244 WISDTLVGVNFGHIFGIDGTQAEDLTRGAIEGRQGIKVQLDFLRKYVPGFEQAHLVTSGE 303 W+SD LVGVNFGH+FG+DGT AEDLTRGAIEGR+ + QL F R+YVPGFE+AH+V SGE Sbjct: 245 WVSDYLVGVNFGHVFGVDGTLAEDLTRGAIEGRRTAERQLQFFRRYVPGFERAHMVASGE 304 Query: 304 QIGIRETRRITGDYTLVKEDFMSMKSFPDDIARNSYFIDVHLADSQSQMDIQHLPSGRSH 363 Q+GIRETRRI GDY L +DF++ +SFPDDIARN+Y+ID+HLA+S+S+M HLP G SH Sbjct: 305 QLGIRETRRIEGDYILTVDDFLAARSFPDDIARNAYYIDIHLANSKSEMTFNHLPPGVSH 364 Query: 364 GVPYRALLPVGVDNLWVAGRAASSDRVVQGSLRVMPNCFXXXXXXXXXXXXXXXSSMTSR 423 GVPYR +LPVG DNLWVAGR SSDR VQGSLRVMPNCF SR Sbjct: 365 GVPYRIMLPVGFDNLWVAGRCVSSDRAVQGSLRVMPNCFSMGQASGTAAALALRDGTGSR 424 Query: 424 EVPIRELQNLLVRQGAWLGEE 444 + + ELQ L+ Q WLGE+ Sbjct: 425 GISVAELQQRLLEQDVWLGED 445 >A6PNA6.1 A6PNA6_9BACT FAD dependent oxidoreductase Length = 445 Score = 253 bits (645), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 154/444 (34%), Positives = 234/444 (52%), Gaps = 16/444 (3%) Query: 8 ADQIPVSREVEVLVXXXXXXXXXXXXXXXXXXXSVLIVEQRGYLGGMGTAALVPAFCPYT 67 + QIP+S +V+V L++EQ G LGGMGT L+PA+CP++ Sbjct: 7 SKQIPLSSGWDVIVVGGGPAGSTAAAAASRLGAKTLVIEQTGALGGMGTQGLLPAWCPFS 66 Query: 68 DHEKPVVRGIGLELLESMKQACGPDYMSRYGEQLDWVPIDAEVLKRVYEAKVLESGAGLL 127 D EK + RG+ E++ + A P +LDWVPID E LKRVY+ V E+GA +L Sbjct: 67 DGEKMIYRGLA-EVVFNRASAFVP---QNEPGKLDWVPIDTEGLKRVYDGIVTENGAEVL 122 Query: 128 YHTVVSQVVMGADGSRVDGVVIVNKSGRSYIGCRYVIDATGDADIAAMSGVAFQKGGE-Q 186 +H+ V V +D +D +++ NK G + + +DATGD DIAA +G F+ G + Sbjct: 123 FHSFVCGVEKKSD-REIDALIVGNKRGLTAYQAKTYVDATGDGDIAAWAGADFEIGEKGT 181 Query: 187 GELQPGTLCYVLSDVSYSRFHEYLKRTGDTGQIPALVQKAQAAGDLPQGRKEVSGFSWIS 246 G+LQ TLC+ L +V + ++ G +++ A + P +++ Sbjct: 182 GKLQLSTLCFHLDNVDSFYYPHTVRNFIHGGDPRSVIHDIMADPEFPSINHPHLCNNFVG 241 Query: 247 DTLVGVNFGHIFGIDGTQAEDLTRGAIEGRQGIKVQLDFLRKYVP-GFEQAHLVTSGEQI 305 + VG N GH+ +D E ++RG I GR+ + + L K+ P F AH+ + + Sbjct: 242 PSTVGYNAGHL-ALDTLSPESVSRGMIAGRKLVSDYRNALAKHAPDAFGGAHIAATANLM 300 Query: 306 GIRETRRITGDYTLVKEDFMSMKSFPDDIARNSYFIDVHLADSQSQMDIQ-------HLP 358 G+RE RRI GDY L D++ +SF D+I RNSYFID+H DS + Q H Sbjct: 301 GVREGRRIRGDYVLSWRDYVERRSFDDEIGRNSYFIDIHGGDSSITSEAQALLKEKGHCE 360 Query: 359 SGRSHGVPYRALLPVGVDNLWVAGRAASSDRVVQGSLRVMPNCFXXXXXXXXXXXXXXXS 418 G SHG+PYR+L+P +DNL ++GR SSDR+V GS+RVMP C S Sbjct: 361 KGESHGIPYRSLVPEKLDNLLLSGRCISSDRIVYGSIRVMPVCLVTGEAAGTAAGLAVKS 420 Query: 419 SMTS-REVPIRELQNLLVRQGAWL 441 + + + EL+ L++ A++ Sbjct: 421 GVLNLHHADVTELRAELLKNSAYI 444 >C3QRN7.1 C3QRN7_9BACE FAD dependent oxidoreductase Length = 463 Score = 245 bits (625), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 137/362 (37%), Positives = 206/362 (56%), Gaps = 12/362 (3%) Query: 42 VLIVEQRGYLGGMGTAALVPAFCPYTDHEKPVVRGIGLELLESMKQACGPDYMSRYGEQL 101 L++E G LGGMGTA +VPA+CP++D EK + RG+ ++ E+ K+ + ++L Sbjct: 72 TLLIEAMGQLGGMGTAGMVPAWCPFSDGEKIIYRGLAEKIFEASKKGVPHERK----QKL 127 Query: 102 DWVPIDAEVLKRVYEAKVLESGAGLLYHTVVSQVVMGADGSRVDGVVIVNKSGRSYIGCR 161 +WV I+ E L +VY+ V +SGA +L+ + V+ V M A+ + +D +++ NKSG + Sbjct: 128 NWVNINPEYLMQVYDQMVADSGAQVLFFSRVAAVEMSANDT-IDAIIVANKSGLVAFKAK 186 Query: 162 YVIDATGDADIAAMSGVAFQKGGEQGELQPGTLCYVLSDVSYSRFHEYLKRTGDTGQIPA 221 IDATGD D+AA +G +F+KGGE G +Q TLC+ ++V S + + + T + Sbjct: 187 VFIDATGDGDVAAWAGASFKKGGEDGVVQSSTLCFSFANVD-SYHYNLIGPSLHTSNKNS 245 Query: 222 LVQKAQAAGDLPQGRKEVSGFSWISDTLVGVNFGHIFGIDGTQAEDLTRGAIEGRQGIKV 281 + +G P K + + I +V N GHI +D T D TR GRQ + Sbjct: 246 PIYDVIKSGKYPLIGKHFNS-NLIGPDVVQFNAGHIDNVDSTDPWDTTRAMATGRQIAEQ 304 Query: 282 QLDFLRKYVP-GFEQAHLVTSGEQIGIRETRRITGDYTLVKEDFMSMKSFPDDIARNSYF 340 L+ L++ P F A +V + +G+R++RRI GDYT +D++ K+F D+I RN Y+ Sbjct: 305 YLEALKEVRPKAFGSAFVVKTASLLGVRDSRRIEGDYTFTFQDWLERKTFEDEIGRNCYY 364 Query: 341 IDVHLADSQSQMDIQHLPSGRSHGVPYRALLPVGVDNLWVAGRAASSDRVVQGSLRVMPN 400 IDVH + G SHG+PYR L P G+ NL VAGR S+D GSLRVMP Sbjct: 365 IDVHKPGHKE----TRYKKGESHGIPYRCLTPKGLKNLLVAGRCISTDEEAFGSLRVMPP 420 Query: 401 CF 402 C Sbjct: 421 CL 422 >A7LWF2.1 A7LWF2_BACOV Putative uncharacterized protein Length = 463 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 206/364 (56%), Gaps = 16/364 (4%) Query: 42 VLIVEQRGYLGGMGTAALVPAFCPYTDHEKPVVRGIGLELLESMKQACGPDYMSRYGEQL 101 L++E G LGGMGTA +VPA+CP++D EK + RG+ ++ E+ ++ + ++L Sbjct: 72 TLLIEAMGQLGGMGTAGMVPAWCPFSDGEKIIYRGLAEKIFEASRKGVPHERK----QKL 127 Query: 102 DWVPIDAEVLKRVYEAKVLESGAGLLYHTVVSQVVMGADGSRVDGVVIVNKSGRSYIGCR 161 +WV I+ E L +VY+ V ESGA +L+ + V+ V M AD + VD +++ NKSG + Sbjct: 128 NWVNINPEYLMQVYDRMVAESGAKVLFFSRVAAVEMSADDT-VDAIIVANKSGLVAFKAK 186 Query: 162 YVIDATGDADIAAMSGVAFQKGGEQGELQPGTLCYVLSDV-SYSRFHEYLKRTGDTGQIP 220 IDATGD D+A +G +F+KGGE G LQ TLC+ ++V SY+ + + + T Sbjct: 187 VFIDATGDGDVATWAGASFKKGGEDGILQSSTLCFSFANVDSYN--YNLIGPSLHTSNKN 244 Query: 221 ALVQKAQAAGDLPQ-GRKEVSGFSWISDTLVGVNFGHIFGIDGTQAEDLTRGAIEGRQGI 279 + + A +G P GR S I +V N GHI +D T TR GRQ Sbjct: 245 SPIFDAIKSGKYPLIGRHFNSNL--IGPDVVQFNAGHIDNVDSTDPWATTRAMATGRQIA 302 Query: 280 KVQLDFLRKYVPG-FEQAHLVTSGEQIGIRETRRITGDYTLVKEDFMSMKSFPDDIARNS 338 + L+ L++ P F A +V + +G+R++RRI GDYT +D++ K+F D+I RN Sbjct: 303 EQYLEALKELQPKTFGSAFVVKTASLLGVRDSRRIEGDYTFTFQDWLERKTFEDEIGRNC 362 Query: 339 YFIDVHLADSQSQMDIQHLPSGRSHGVPYRALLPVGVDNLWVAGRAASSDRVVQGSLRVM 398 Y+IDVH + G SHG+PYR L P G+ NL AGR S+D GSLRVM Sbjct: 363 YYIDVHKPGHKE----TRYKKGESHGIPYRCLTPKGMKNLLTAGRCISTDEEAFGSLRVM 418 Query: 399 PNCF 402 P C Sbjct: 419 PPCL 422 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,527,201,942 Number of extensions: 102384502 Number of successful extensions: 211386 Number of sequences better than 1.0e-05: 223 Number of HSP's gapped: 210827 Number of HSP's successfully gapped: 235 Length of query: 451 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 312 Effective length of database: 1,751,175,118 Effective search space: 546366636816 Effective search space used: 546366636816 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)