BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0305.0018.p (316 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DGV4.1 B1DGV4_9BACL Putative uncharacterized protein 459 e-127 B3KAR2.1 B3KAR2_9BACI Putative uncharacterized protein 450 e-125 C1W389.1 C1W389_9MICO Putative uncharacterized protein 427 e-118 Q02YI3.1 Q02YI3_LACLS Putative uncharacterized protein 337 8e-91 A8S9T0.1 A8S9T0_9FIRM Putative uncharacterized protein 329 3e-88 >B1DGV4.1 B1DGV4_9BACL Putative uncharacterized protein Length = 314 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 214/306 (69%), Positives = 247/306 (80%), Gaps = 1/306 (0%) Query: 5 NEYVGGVTWGFMGRRGTWANDAAKTSMELMQSVTGANWTAIAFSAIQATPQSTEIPYWEE 64 NEYV G+TWG+ G RGTWA+ A+ SM M + NW AIA +A Q TPQST IPYWEE Sbjct: 6 NEYVNGMTWGWTGVRGTWASPEAEHSMSEMTKLN-VNWVAIALAANQETPQSTVIPYWEE 64 Query: 65 PTVTDDEVLWAIRTAKSLGLKVCLKPIVNCADGTWRAHINFFDKDVPCEPKWSDWFSSYT 124 PTVTD EVLWAIR AK GLKVCLKP+VNC +GTWRAHINFFD +VP EP W++WF SY Sbjct: 65 PTVTDGEVLWAIREAKRHGLKVCLKPVVNCTNGTWRAHINFFDDEVPGEPSWAEWFRSYR 124 Query: 125 AFILHFAAIAEESGCEMFCIGCELVMSDRRAAQWRALIAEVRKVYHGILTYNCDKYQEDN 184 +FI H+A IAE GCEM CIGCE+V +D+R +WRALIAEVR++Y G++TYNCDKYQE+ Sbjct: 125 SFIKHYAVIAEAEGCEMLCIGCEMVQTDKRDKEWRALIAEVREIYSGLITYNCDKYQEER 184 Query: 185 VTWWDALDVISSSGYYPGQDWEAQLDRIEGVVKQHNKPFFFMEAGCPSRTGSAAIPNDWS 244 VTWWDA+D+ISSSGYYP WEAQLDRIE VK +KPFFFMEAGCPSR GS A PNDWS Sbjct: 185 VTWWDAVDIISSSGYYPIDQWEAQLDRIEAAVKSWDKPFFFMEAGCPSREGSLARPNDWS 244 Query: 245 LKGEPSEDEQKRYYEAMFHSCERREWVRGFMLWDWPAQLYPLEEAAENDDYCMYGKSAAH 304 L G PSE EQKRYYEAMF +C +REW++G+MLWDWPA+LY EEAA NDDYCMYGK AA Sbjct: 245 LPGSPSELEQKRYYEAMFAACSKREWMQGYMLWDWPARLYKSEEAASNDDYCMYGKIAAE 304 Query: 305 IIKEYY 310 +I E+Y Sbjct: 305 VISEHY 310 >B3KAR2.1 B3KAR2_9BACI Putative uncharacterized protein Length = 318 Score = 450 bits (1157), Expect = e-125, Method: Compositional matrix adjust. Identities = 209/308 (67%), Positives = 251/308 (81%), Gaps = 1/308 (0%) Query: 5 NEYVGGVTWGFMGRRGTWANDAAKTSMELMQSVTGANWTAIAFSAIQATPQSTEIPYWEE 64 E V G+TWG+ G RG+W A+ SME M + NW AIA SA+QATPQSTEIP+ EE Sbjct: 8 TEKVCGMTWGWTGVRGSWTGPEAEFSMERMADMD-VNWVAIALSAVQATPQSTEIPFREE 66 Query: 65 PTVTDDEVLWAIRTAKSLGLKVCLKPIVNCADGTWRAHINFFDKDVPCEPKWSDWFSSYT 124 PTVTDDEV WAIR AKSLGLKVCLKP+VN A+GTWRAHINFFD++VP EP W++WF SY Sbjct: 67 PTVTDDEVRWAIRKAKSLGLKVCLKPVVNVANGTWRAHINFFDEEVPGEPSWAEWFRSYG 126 Query: 125 AFILHFAAIAEESGCEMFCIGCELVMSDRRAAQWRALIAEVRKVYHGILTYNCDKYQEDN 184 FI H+A IAEE CEM C+GCE+V +D+R A+WRALIA+VR VY G++TYNCDKYQE+ Sbjct: 127 EFIRHYAEIAEEERCEMLCVGCEMVQADKRDAEWRALIADVRNVYGGLVTYNCDKYQEER 186 Query: 185 VTWWDALDVISSSGYYPGQDWEAQLDRIEGVVKQHNKPFFFMEAGCPSRTGSAAIPNDWS 244 V WWDA+D+ISSSGYYP WE QLDRIEG V++ NKPFFFMEAGCPSR GSAA PNDWS Sbjct: 187 VGWWDAVDIISSSGYYPIDQWEEQLDRIEGTVRRWNKPFFFMEAGCPSREGSAARPNDWS 246 Query: 245 LKGEPSEDEQKRYYEAMFHSCERREWVRGFMLWDWPAQLYPLEEAAENDDYCMYGKSAAH 304 L G PSE+EQ++YYEAMF +C +REW++G+MLWDWPA+LY +EEA+ NDDYCMYGK A Sbjct: 247 LPGGPSEEEQRQYYEAMFAACAKREWMQGYMLWDWPARLYGVEEASLNDDYCMYGKLAEE 306 Query: 305 IIKEYYSS 312 +K +Y++ Sbjct: 307 TVKTFYAA 314 >C1W389.1 C1W389_9MICO Putative uncharacterized protein Length = 313 Score = 427 bits (1097), Expect = e-118, Method: Compositional matrix adjust. Identities = 197/307 (64%), Positives = 234/307 (76%) Query: 7 YVGGVTWGFMGRRGTWANDAAKTSMELMQSVTGANWTAIAFSAIQATPQSTEIPYWEEPT 66 Y+ G+TWG+ G RGTW DAAK SM LM NWTAI F+A Q T ST I Y +EPT Sbjct: 5 YIAGMTWGWTGVRGTWTGDAAKHSMTLMAQRLHVNWTAITFAAHQDTAWSTTIHYEDEPT 64 Query: 67 VTDDEVLWAIRTAKSLGLKVCLKPIVNCADGTWRAHINFFDKDVPCEPKWSDWFSSYTAF 126 VTDDE+ AI A +LGL+VCLKP+VN +DGTWRAHINFFD DVPCEP W WF SYT F Sbjct: 65 VTDDEIRTAISQAHNLGLQVCLKPVVNVSDGTWRAHINFFDHDVPCEPTWGQWFDSYTRF 124 Query: 127 ILHFAAIAEESGCEMFCIGCELVMSDRRAAQWRALIAEVRKVYHGILTYNCDKYQEDNVT 186 I+H+A IAE+ MFCIGCE+V +DRRA QWR +I VR+VY G++TYNCDKYQEDNVT Sbjct: 125 IVHYARIAEDMNVAMFCIGCEMVNTDRRANQWRDVIHAVRQVYSGLITYNCDKYQEDNVT 184 Query: 187 WWDALDVISSSGYYPGQDWEAQLDRIEGVVKQHNKPFFFMEAGCPSRTGSAAIPNDWSLK 246 WWDA+DVISSSGYYP W+ +LDRIE VV++ NKPFFFMEAGCPSR GS +PNDW+L Sbjct: 185 WWDAVDVISSSGYYPHGTWDTELDRIENVVRRENKPFFFMEAGCPSREGSQHLPNDWNLV 244 Query: 247 GEPSEDEQKRYYEAMFHSCERREWVRGFMLWDWPAQLYPLEEAAENDDYCMYGKSAAHII 306 GEPS Q ++Y+ FH+C+ R WVRGFMLWDWPA LY +EAA NDDYC+Y K A + Sbjct: 245 GEPSGAAQAQWYDDAFHACDTRPWVRGFMLWDWPAHLYHPDEAATNDDYCLYEKPAERTV 304 Query: 307 KEYYSSK 313 ++YY + Sbjct: 305 RKYYDAH 311 >Q02YI3.1 Q02YI3_LACLS Putative uncharacterized protein Length = 309 Score = 337 bits (864), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 159/303 (52%), Positives = 207/303 (68%), Gaps = 1/303 (0%) Query: 8 VGGVTWGFMGRRGTWANDAAKTSMELMQSVTGANWTAIAFSAIQATPQSTEIPYWEEPTV 67 + ++G+ + G N+ A+ SM ++ T N + A QA ST I W+ Sbjct: 4 IKAASFGYYAKEGELNNEYAQWSMRTLKERTNINTIILTIVAEQANAHSTSIN-WQTMPP 62 Query: 68 TDDEVLWAIRTAKSLGLKVCLKPIVNCADGTWRAHINFFDKDVPCEPKWSDWFSSYTAFI 127 D+E+ IR A+SLGL V LKP++NCADGTWRA+INFFD DV CEPKWSDWF +Y F+ Sbjct: 63 KDEEIKATIRYAQSLGLDVILKPMINCADGTWRAYINFFDIDVVCEPKWSDWFLAYRNFL 122 Query: 128 LHFAAIAEESGCEMFCIGCELVMSDRRAAQWRALIAEVRKVYHGILTYNCDKYQEDNVTW 187 LH+A IA+E G MF +GCELV SD R A+WR LI +VR Y G++TYNCDKYQED++TW Sbjct: 123 LHYAKIAQEFGATMFVVGCELVSSDHREAEWRKLIDDVRGSYKGLITYNCDKYQEDHLTW 182 Query: 188 WDALDVISSSGYYPGQDWEAQLDRIEGVVKQHNKPFFFMEAGCPSRTGSAAIPNDWSLKG 247 WDA+DVISSSGYYP W+ +L RIE VVK++NKPFFF EAG PS G +PNDW+ KG Sbjct: 183 WDAVDVISSSGYYPYNQWDKELLRIEKVVKKYNKPFFFCEAGAPSVEGGDLLPNDWTNKG 242 Query: 248 EPSEDEQKRYYEAMFHSCERREWVRGFMLWDWPAQLYPLEEAAENDDYCMYGKSAAHIIK 307 + S + Q R+YE M +C + ++V GF LWDW AQ+Y ++A + DY Y K A +IK Sbjct: 243 KVSLEAQTRFYEGMLSACAKVDFVLGFGLWDWKAQIYSAKQATNDIDYAFYNKPAEKLIK 302 Query: 308 EYY 310 +YY Sbjct: 303 DYY 305 >A8S9T0.1 A8S9T0_9FIRM Putative uncharacterized protein Length = 309 Score = 329 bits (843), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 160/310 (51%), Positives = 209/310 (67%), Gaps = 7/310 (2%) Query: 1 MSLQNEYVGGVTWGFMGRRGTWANDAAKTSMELMQSVTGANWTAIAFSAIQATPQSTEIP 60 M L++ + G V + RRG ++ A SM M T ANW ++ S IQ+ P S EI Sbjct: 1 MELKHNFYG-VNFAPFPRRGVLNSETAHRSMTAMVEATAANWVILSPSGIQSGPYSEEID 59 Query: 61 YWEEPTVTDDEVLWAIRTAKSLGLKVCLKPIVNCADGTWRAHINFFDKDVPCEPKWSDWF 120 + + T TD+E+ AIR AK LGL+V LKP VNCA+G WRA I+FFD DVPCE +WS WF Sbjct: 60 WNTDATPTDEELCSAIRFAKQLGLQVALKPTVNCANGVWRARISFFDHDVPCETQWSGWF 119 Query: 121 SSYTAFILHFAAIAEESGCEMFCIGCELVMSDRRAAQWRALIAEVRKVYHGILTYNCDKY 180 ++YTAF H+AA+AE GC +F GCE+ M++ R +WRALIA VR+ YHG ++YNCDKY Sbjct: 120 ANYTAFQTHYAALAEAEGCGLFLTGCEMTMTEHRETEWRALIAAVRQQYHGPVSYNCDKY 179 Query: 181 QEDNVTWWDALDVISSSGYYPGQDWEAQLDRIEGVVKQHNKPFFFMEAGCPSRTGSAAIP 240 ED+V WWDA+D I+SSGYYP +DWE QLDRIE V +++ KP F EAGC + TGS+A+P Sbjct: 180 GEDHVNWWDAVDCIASSGYYPLKDWENQLDRIEAVSQKYKKPVLFSEAGCMNITGSSAVP 239 Query: 241 NDWSLKGEPSEDEQKRYYEAMFHSCERREWVRGFMLWDWPAQLYPLEEAAENDDYCMYGK 300 N+W LKG ++ EQ +YEAMF +C +R WV GF +WDWPA + Y + G+ Sbjct: 240 NNWELKGTRNDLEQADWYEAMFSACAKRPWVMGFGVWDWPADTRAVSA------YAVSGR 293 Query: 301 SAAHIIKEYY 310 AA II Y Sbjct: 294 PAAKIIHNAY 303 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.133 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,060,352,619 Number of extensions: 83545842 Number of successful extensions: 177844 Number of sequences better than 1.0e-05: 49 Number of HSP's gapped: 177761 Number of HSP's successfully gapped: 49 Length of query: 316 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 181 Effective length of database: 1,788,859,178 Effective search space: 323783511218 Effective search space used: 323783511218 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)