BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0305.0013.p (432 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DGV3.1 B1DGV3_9BACL Extracellular solute-binding protein family 1 422 e-116 B3KAR3.1 B3KAR3_9BACI Extracellular solute-binding protein family 1 407 e-111 B3PG14.1 B3PG14_CELJU Bacterial extracellular solute-binding pro... 299 4e-79 C2I9S8.1 C2I9S8_VIBCH Putative uncharacterized protein 284 1e-74 B1DAF3.1 B1DAF3_9BACL Transcriptional regulator, AraC family 283 3e-74 >B1DGV3.1 B1DGV3_9BACL Extracellular solute-binding protein family 1 Length = 447 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 203/389 (52%), Positives = 269/389 (69%), Gaps = 2/389 (0%) Query: 29 GTGASPSGLSGTIVMLTNRIDLIEDGTFKSYADEFTKKYPEAHVEFEGLSNYATDILVRL 88 GT +PS LSGTI +LT R D + DGTF YA +F +KYP A +EFEGL+NYATDI VRL Sbjct: 54 GTTDAPSDLSGTIKVLTQRTDYVNDGTFDRYAAKFKEKYPNAKIEFEGLTNYATDIQVRL 113 Query: 89 STKDAGDVLLLPVNLPAKELKLFFEPLTPELAAQEKFTTFNIYDGKRYGLSTGSTTSGIV 148 +T +AGDVL++P L E +FEPL E F ++DGKRYGLSTG T GIV Sbjct: 114 TTGEAGDVLMIPAGLATSEYSKYFEPLPDEWFNNVYFADNTLFDGKRYGLSTGVNTQGIV 173 Query: 149 YNKQAFKKAGIERVPQTLDEFYAASAKLKQAGIIPLYMNYGAVWPLREWGNNLVNYMTGN 208 YNK+AF AGI++VP TLDE YA + KLK A I PLYMNYGA WP+ WG+ Y+ G+ Sbjct: 174 YNKKAFAAAGIDKVPTTLDELYADAEKLKAAKITPLYMNYGAQWPMGNWGDGSAWYVNGD 233 Query: 209 PDYLNNMVQENNPWKIDNEWGQAIAIARTMVAKGYVEDQLFSNNWEISKTKLAQGEAGMY 268 P + V E+ P+++DN WG I RT V KGYVE L++NNWE+SK ++A G+A MY Sbjct: 234 PQFATKQVSEDAPFQLDNAWGTLATIGRTFVEKGYVEKDLYTNNWEMSKGEVASGKAAMY 293 Query: 269 LQGNWTIRQILDAGAKSEDIGFFPFPYDNKPTHYAALNPDWFIGVSKFSKNKELAMAWVE 328 GNW I QI+ AGA SEDIGFFP PYDN + A L D+F+ VSK SKNKELA AWVE Sbjct: 294 FLGNWVIPQIIGAGAASEDIGFFPLPYDNSGKYNAPLGSDYFVAVSKDSKNKELAKAWVE 353 Query: 329 YFLKKTSYT--ANFLPSDSSEEPALPQYSEFLSYHPKLVEATVQTDAFIDMANRAKLSFW 386 +F+K++ Y + F+P D S + ++PQ +EF + +P L+E+ + ++AN+A++ Sbjct: 354 FFVKESGYVEDSGFMPIDKSAQSSIPQLAEFQALNPTLIESEATDPKYNEIANKAQIGIG 413 Query: 387 SGDYIQELLAAPDLQKSFDELNEKWKEAR 415 +GDY+QE + A DL+ +FD+LN+KWK+A+ Sbjct: 414 TGDYVQEYIVADDLKAAFDKLNKKWKDAK 442 >B3KAR3.1 B3KAR3_9BACI Extracellular solute-binding protein family 1 Length = 438 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 201/424 (47%), Positives = 280/424 (66%), Gaps = 9/424 (2%) Query: 1 MLTILVLLLMSAGCDSRSNNQVLPSPLPGTGAS----PSG---LSGTIVMLTNRIDLIED 53 +L + V +++A +++NN +P G S SG L G + +LT+R DL+ D Sbjct: 10 LLLLTVSSILAACGGNKTNNAGTEAPPSGNAGSEPTEASGEAELGGKLKVLTHRTDLVND 69 Query: 54 GTFKSYADEFTKKYPEAHVEFEGLSNYATDILVRLSTKDAGDVLLLPVNLPAKELKLFFE 113 GT Y + F KYP+A +EFEGL+NYATDI VRL+T +AGDVL++P L E +FE Sbjct: 70 GTLDKYVEAFKAKYPKAEIEFEGLTNYATDIQVRLTTGEAGDVLMIPTGLATSEYGKYFE 129 Query: 114 PLTPELAAQEKFTTFNIYDGKRYGLSTGSTTSGIVYNKQAFKKAGIERVPQTLDEFYAAS 173 PL + F +++GKRYG+STG T GIVYNK+AF+ AG+++VP TLDE YAA+ Sbjct: 130 PLPDTMFEDVYFADNTLFEGKRYGISTGVNTQGIVYNKKAFQAAGVDKVPTTLDELYAAA 189 Query: 174 AKLKQAGIIPLYMNYGAVWPLREWGNNLVNYMTGNPDYLNNMVQENNPWKIDNEWGQAIA 233 KLK A IIPLYMN+GA W + W +N Y+ G+P + + V E P+++DN WG Sbjct: 190 EKLKAADIIPLYMNFGAQWTMGNWADNSAWYVNGDPQFASKQVAEEAPFQVDNAWGILAN 249 Query: 234 IARTMVAKGYVEDQLFSNNWEISKTKLAQGEAGMYLQGNWTIRQILDAGAKSEDIGFFPF 293 I RT V K +VE L++NNWEISK ++A G+A MY GNW I Q++ AGA SEDIGFFP Sbjct: 250 IGRTFVQKEWVEKDLYTNNWEISKGEMASGKAAMYFLGNWVIPQVIGAGAASEDIGFFPL 309 Query: 294 PYDNKPTHYAALNPDWFIGVSKFSKNKELAMAWVEYFLKKTSYT--ANFLPSDSSEEPAL 351 PYDN + A L D+FI VSK SK+KELA AWV++F+K++ Y + F+P S E ++ Sbjct: 310 PYDNSGKYNAPLGSDYFIAVSKDSKSKELATAWVDFFVKESGYVEDSGFMPIIKSAESSI 369 Query: 352 PQYSEFLSYHPKLVEATVQTDAFIDMANRAKLSFWSGDYIQELLAAPDLQKSFDELNEKW 411 Q +EF S++P L+E+ F ++AN+A++ +GDY+QE + A DLQ +FD+LN KW Sbjct: 370 SQLAEFQSFNPTLIESEATDPKFNEIANKAQIGIGTGDYVQEYIVADDLQAAFDKLNAKW 429 Query: 412 KEAR 415 KEA+ Sbjct: 430 KEAK 433 >B3PG14.1 B3PG14_CELJU Bacterial extracellular solute-binding protein Length = 412 Score = 299 bits (766), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 140/391 (35%), Positives = 238/391 (60%), Gaps = 6/391 (1%) Query: 30 TGASPSGLSGTIVMLTNRIDLIEDGTFKSYADEFTKKYPEAHVEFEGLSNYATDILVRLS 89 + S + ++G I +NR+DL+ +G++ + EF +YP+A V+ +G+++Y + R Sbjct: 22 SAPSLAAVNGEITFFSNRVDLVTNGSYARWVKEFQIQYPQARVQVQGITDYEVAMPKRFE 81 Query: 90 TKDAGDVLLLPVNLPAKELKLFFEPLTPELAAQEK--FTTFNIYDGKRYGLSTGSTTSGI 147 ++ GDV+L+P ++P + +F PL L Q+K F Y GK Y + G G+ Sbjct: 82 ARNYGDVMLVPRDMPKQTYPKYFLPLN-GLQLQDKIYFADNWEYQGKHYAYTQGVIAEGL 140 Query: 148 VYNKQAFKKAGIERVPQTLDEFYAASAKLKQAGIIPLYMNYGAVWPLREWGNNLVNYMTG 207 VYNK+ FK AG+++ P TLDE + +A LK G +P+ +N GA WPL++W ++ G Sbjct: 141 VYNKRVFKAAGLDKPPATLDELFTIAATLKATGKVPIALNLGAAWPLQQWDKAVMG-AAG 199 Query: 208 NPDYLNNMVQENNPWKIDNEWGQAIAIARTMVAKGYVEDQLFSNNWEISKTKLAQGEAGM 267 + +Y NMV + P++ + Q++ IA + KGY E+ NNWE+SK + M Sbjct: 200 DGNYFANMVNDAQPFRAGKPYYQSLKIAHDLFTKGYSEEDFILNNWELSKHDFIANKTAM 259 Query: 268 YLQGNWTIRQILDAGAKSEDIGFFPFPYDNKPTHYAALNPDWFIGVSKFSKNKELAMAWV 327 GNW I Q++++G +SEDIGF PFP+DN A LN DW + VS++SK+ + A AW+ Sbjct: 260 LFLGNWVIPQLMESGMRSEDIGFIPFPFDNSGKPRAILNFDWGMAVSRYSKHPDTAKAWI 319 Query: 328 EYFLKKTSYT--ANFLPSDSSEEPALPQYSEFLSYHPKLVEATVQTDAFIDMANRAKLSF 385 E+ + K+++ A F+P+D S + Q ++++SY P++++A +++ FI +AN+A + F Sbjct: 320 EFIITKSNFADIAGFIPTDKSRRSPMAQLTQYMSYQPEIIQAAPESNDFIRLANKAGMDF 379 Query: 386 WSGDYIQELLAAPDLQKSFDELNEKWKEARE 416 SG YI+ +L +PD + S N++W++A+E Sbjct: 380 MSGGYIRNILLSPDFEGSMAYWNKRWRQAKE 410 >C2I9S8.1 C2I9S8_VIBCH Putative uncharacterized protein Length = 424 Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 138/391 (35%), Positives = 246/391 (62%), Gaps = 7/391 (1%) Query: 31 GASPSGLSGTIVMLTNRIDLIEDGTFKSYADEFTKKYPEA-HVEFEGLSNYATDILVRLS 89 G + + + G+I TNR DL+E G +K Y EF YP V+ G ++Y + R++ Sbjct: 32 GINQALVKGSITFYTNRTDLVEAGVYKRYEKEFKDIYPNVTEVKVIGFADYQGGLRPRMN 91 Query: 90 TKDAGDVLLLPVNLPAKELKLFFEPLTPELAAQEKFTTFNIYD--GKRYGLSTGSTTSGI 147 T D GD++L+ ++P+++ F+EPL L + E+ ++ ++ G YG+S G++ G+ Sbjct: 92 TGDYGDLVLILPSVPSEQYGNFYEPLNA-LYSPEQVYFYDAWENNGNAYGISMGNSVEGL 150 Query: 148 VYNKQAFKKAGIERVPQTLDEFYAASAKLKQAGIIPLYMNYGAVWPLREWGNNLVNYMTG 207 VYNK+ +KAG+E +TL +F+ A+ K+K G IPLY+N+GA WPL++W + + G Sbjct: 151 VYNKEVLEKAGVEVPIKTLSDFFDAAQKIKANGQIPLYINFGAQWPLQQW-DKFPLVVEG 209 Query: 208 NPDYLNNMVQENNPWKIDNEWGQAIAIARTMVAKGYVEDQLFSNNWEISKTKLAQGEAGM 267 N M+ ++ P+ D + +++++ + ++ G E L +N+WE SK +A+G+AGM Sbjct: 210 NDGVYERMLTQDKPFSGDTAYNKSLSVLKKLIDDGLTEKDLMTNSWEDSKNAIAKGDAGM 269 Query: 268 YLQGNWTIRQILDAGAKSEDIGFFPFPYDNKPTHYAALNPDWFIGVSKFSKNKELAMAWV 327 Y GNW I Q+++ GA S +IGF P P ++K A +N DW VSKFS NKE A A++ Sbjct: 270 YYLGNWVIPQVIERGAASNNIGFMPMPSNDKGELNAQMNHDWGYAVSKFSNNKETAKAYL 329 Query: 328 EYFLKKTSY--TANFLPSDSSEEPALPQYSEFLSYHPKLVEATVQTDAFIDMANRAKLSF 385 +Y ++ + + A F+P+ S++P+L Q +E++SY P +++ V + FI++ NR+K+ F Sbjct: 330 KYLIEDSDFEKIAGFIPTLKSKKPSLEQLNEYMSYEPNVIQTPVNSSTFIEVTNRSKIDF 389 Query: 386 WSGDYIQELLAAPDLQKSFDELNEKWKEARE 416 +SG YIQ+++ + + ++ ++L+ +W+ A++ Sbjct: 390 YSGGYIQDVITSKNFNEALEKLDSRWERAKK 420 >B1DAF3.1 B1DAF3_9BACL Transcriptional regulator, AraC family Length = 852 Score = 283 bits (723), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 146/385 (37%), Positives = 229/385 (59%), Gaps = 9/385 (2%) Query: 37 LSGTIVMLTNRIDLIEDGTFKSYADEFTKKYPEAHVEFEGLSNYATDILVRLSTKDAGDV 96 ++G +V TNR DL+ D K+YA +F +KYP+A VE E + +Y +R+++ + D+ Sbjct: 470 IAGKVVFTTNRTDLV-DTELKNYAAKFHEKYPDATVEIEAIKDYDQTTKIRMASNELADI 528 Query: 97 LLLPVNLPAKELKLFFEPLTPELAAQEK--FTTFNIYDGKRYGLSTGSTTSGIVYNKQAF 154 L+P + +L F+ PL +L ++ F DGK YG+S+GS G+ YNK+AF Sbjct: 529 SLIPGTVKNSDLPNFYLPLD-DLGLNDRIYFKDNRSQDGKLYGISSGSAAMGVTYNKKAF 587 Query: 155 KKAGIERVPQTLDEFYAASAKLKQAGIIPLYMNYGAVWPLREWGNNLVNYMTGNPDYLNN 214 +AGI VP+TLDE YAA+ KLK AGIIPL N+ WPL W + +P N Sbjct: 588 AQAGITEVPKTLDELYAAAEKLKAAGIIPLATNFKDKWPLYGWDQEAFIF-ANDPSLHNT 646 Query: 215 MVQENNPWKIDNEWGQAIAIARTMVAKGYVEDQLFSNNWEISKTKLAQGEAGMYLQGNWT 274 M ++ P+ +D QA +I + MV GYVE L S NWE SK +A G+ M+L GNW Sbjct: 647 MATQDEPFAVDGPHWQAFSILKKMVDGGYVEKDLMSTNWEGSKKDVASGKIAMFLLGNWV 706 Query: 275 IRQILDAGAKSEDIGFFPFPYDNKPTHYAALNPDWFIGVSKFSKNKELAMAWVEYFLKKT 334 + Q++D GA +ED+GFFP P DN L D++ G+ K S+N E A A++++ ++++ Sbjct: 707 VPQVVDNGAAAEDVGFFPLPLDNSGEAKVILASDYYYGIDKNSENPETAKAFLKFLIEES 766 Query: 335 SYT--ANFLPSDSSEEPALPQYSEFLSYHPKLVEATVQTDAFIDMANRAKLSFWSGDYIQ 392 Y A F+P ++P L Q +EF++ +PK++E + D ++ +AN K+ F + + Q Sbjct: 767 GYDDYAGFIPVLKDKKPKLAQLNEFMATNPKVIEMAAENDDYLAIAN--KMQFDTSAFAQ 824 Query: 393 ELLAAPDLQKSFDELNEKWKEAREG 417 + + D++ FD N+KWK+A++ Sbjct: 825 DAIMGKDMKAVFDSYNKKWKDAKKA 849 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,683,868,105 Number of extensions: 120702015 Number of successful extensions: 305340 Number of sequences better than 1.0e-05: 466 Number of HSP's gapped: 305247 Number of HSP's successfully gapped: 466 Length of query: 432 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 293 Effective length of database: 1,751,175,118 Effective search space: 513094309574 Effective search space used: 513094309574 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)