BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0305.0008.p (346 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DIV0.1 B1DIV0_9BACL Aminodeoxychorismate lyase 329 2e-88 B3KFL6.1 B3KFL6_9BACI Aminodeoxychorismate lyase 312 2e-83 A9U7B3.1 A9U7B3_PHYPA Predicted protein (Fragment) 231 7e-59 C0ZAS4.1 C0ZAS4_BREBN Putative uncharacterized protein yrrL 217 1e-54 A5D3C6.1 A5D3C6_PELTS Predicted periplasmic solute-binding protein 184 1e-44 >B1DIV0.1 B1DIV0_9BACL Aminodeoxychorismate lyase Length = 365 Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 170/324 (52%), Positives = 215/324 (66%), Gaps = 2/324 (0%) Query: 25 YVWNGMQPAKPGQPVTFTIEKGMGSSEIADLLEDNGIIRKGLFFKGYLKWVKEGSSFKAG 84 YVWNG++P PG+PV I KG + ++D LE++GII+ FK YLK EGS F+AG Sbjct: 39 YVWNGLKPTAPGEPVRIEIAKGASAFTVSDTLEEHGIIKNSFLFKYYLKAKNEGSHFQAG 98 Query: 85 TYTAAPGDTYDALIARLNAGDVVKKATVVFTIPEGYTARQIADKLAVAWNQKPEVFLKII 144 Y +PG D +IA+LN+GD V ++ + FTIPEG+T QIADKL+ FL + Sbjct: 99 VYDLSPGMENDEIIAKLNSGDTVAESMIRFTIPEGFTLLQIADKLSEEKLIDKHKFLTLA 158 Query: 145 DSGAGLEAVSRL-GIPENSQLRHRLEGYLFPETYELVKESTPEQVVEAMLEQLEKKLDSV 203 DS G E + IP + +L HRLEGYLFPETYEL K ST E +++ M+ +L+ KLD++ Sbjct: 159 DSAPGWEGAEAVKSIPADDKLHHRLEGYLFPETYELKKGSTEEDILKRMMAELDTKLDTL 218 Query: 204 G-GWQAKLKERGLSLHELLTVASLXXXXXXXXXXXPIVAGVIYNRLDKGQKLEIDATVQY 262 GW L ER L+LH+LLT+ASL P+VAGVIYNRL KG L+IDATVQY Sbjct: 219 PEGWSDVLAERKLTLHQLLTIASLIEREVVVDEERPVVAGVIYNRLAKGMPLQIDATVQY 278 Query: 263 LLDKQKERLYEKDLKVDSPYNTYKNEXXXXXXXXXXXXXXXKAALEPKASDYYFYVTKKD 322 LLDK KERLYEKDL++DSPYNTYK + KAAL P+ +DY++YVTKKD Sbjct: 279 LLDKPKERLYEKDLQIDSPYNTYKIDGLPPGPIASPSLASIKAALYPEKNDYFYYVTKKD 338 Query: 323 GSQGHLFGKTYKEHLANIKKSEQN 346 GSQ HLF KTYKEHL NI+ S + Sbjct: 339 GSQTHLFAKTYKEHLKNIETSNKT 362 >B3KFL6.1 B3KFL6_9BACI Aminodeoxychorismate lyase Length = 347 Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 159/324 (49%), Positives = 212/324 (65%), Gaps = 2/324 (0%) Query: 24 WYVWNGMQPAKPGQ-PVTFTIEKGMGSSEIADLLEDNGIIRKGLFFKGYLKWVKEGSSFK 82 +YVWNG+QP + + PV FT+E GM +S IADLLE+ G+I+ L KGYLK EGS Sbjct: 20 FYVWNGLQPVQSSETPVEFTVESGMSTSSIADLLEEKGLIKNALILKGYLKLSGEGSRLM 79 Query: 83 AGTYTAAPGDTYDALIARLNAGDVVKKATVVFTIPEGYTARQIADKLAVAWNQKPEVFLK 142 AGTY A PG + L++++N G+V + V FTIPEGYT Q+A+ +A + FL+ Sbjct: 80 AGTYEATPGTPFQELLSKMNNGEVKPEEMVRFTIPEGYTILQMAETIARESGIDEKEFLE 139 Query: 143 IIDSGAGLEAVSRLGIPENSQLRHRLEGYLFPETYELVKES-TPEQVVEAMLEQLEKKLD 201 ++D +G IP + LRH LEGYLFP TYEL K+ T + + E ML++ EK+L Sbjct: 140 VVDQPSGWNVPIAEEIPAEANLRHHLEGYLFPATYELPKKDLTAKGIAETMLKETEKRLA 199 Query: 202 SVGGWQAKLKERGLSLHELLTVASLXXXXXXXXXXXPIVAGVIYNRLDKGQKLEIDATVQ 261 + W+++L+ RG++ HEL+T+ASL +VAGVIYNRLD+ +LEIDATVQ Sbjct: 200 EIPDWESQLEARGVTFHELMTIASLVEREVVADQERALVAGVIYNRLDEDMRLEIDATVQ 259 Query: 262 YLLDKQKERLYEKDLKVDSPYNTYKNEXXXXXXXXXXXXXXXKAALEPKASDYYFYVTKK 321 YLLDK KERL DL+V+SPYNTY+ + +AAL P+ SDY FYVTKK Sbjct: 260 YLLDKPKERLLYADLEVESPYNTYRQKGLPPGPISSPSLESIQAALNPEKSDYLFYVTKK 319 Query: 322 DGSQGHLFGKTYKEHLANIKKSEQ 345 DG+Q HLF KTYKEHL NI+ S++ Sbjct: 320 DGTQEHLFAKTYKEHLKNIEASKK 343 >A9U7B3.1 A9U7B3_PHYPA Predicted protein (Fragment) Length = 500 Score = 231 bits (589), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 123/241 (51%), Positives = 153/241 (63%) Query: 78 GSSFKAGTYTAAPGDTYDALIARLNAGDVVKKATVVFTIPEGYTARQIADKLAVAWNQKP 137 GS F+AGTY A PG TYD LIA+LN+G+VVK + TIPEGYT QIA + A P Sbjct: 1 GSRFQAGTYEAKPGVTYDQLIAKLNSGEVVKAEMIRITIPEGYTLEQIAKTVGEASQSDP 60 Query: 138 EVFLKIIDSGAGLEAVSRLGIPENSQLRHRLEGYLFPETYELVKESTPEQVVEAMLEQLE 197 F+K+ D+G E + IP ++ L+H+ EGYLFP+TYE K + E+++ MLEQ++ Sbjct: 61 AAFVKLADTGGQTEVPAFKEIPTDTSLKHKAEGYLFPDTYEFKKGTGQEEILTRMLEQMQ 120 Query: 198 KKLDSVGGWQAKLKERGLSLHELLTVASLXXXXXXXXXXXPIVAGVIYNRLDKGQKLEID 257 KLD + KLK GL+LHE+LTVASL P+VAGVIYNRL K KLEID Sbjct: 121 SKLDQIPDLDQKLKAHGLTLHEMLTVASLVEREVVVDKERPLVAGVIYNRLHKEMKLEID 180 Query: 258 ATVQYLLDKQKERLYEKDLKVDSPYNTYKNEXXXXXXXXXXXXXXXKAALEPKASDYYFY 317 ATVQY L + KERL KDLKVDSPYNTY + +AAL P+ASDY +Y Sbjct: 181 ATVQYALKEPKERLLYKDLKVDSPYNTYLHPGLPPGPICSPSIASIEAALSPEASDYLYY 240 Query: 318 V 318 V Sbjct: 241 V 241 >C0ZAS4.1 C0ZAS4_BREBN Putative uncharacterized protein yrrL Length = 363 Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/324 (40%), Positives = 174/324 (53%), Gaps = 4/324 (1%) Query: 24 WYVWNGMQPAKPGQPV-TFTIEKGMGSSEIADLLEDNGIIRKGLFFKGYLKWVKEGSSFK 82 WYV+ +QP Q V I G +I LLE+ G+IR F Y+K+ K Sbjct: 43 WYVYQQLQPVAGEQTVKNVAIPSGSSVQKIGRLLEEQGLIRDADVFNYYVKYKGVAPDLK 102 Query: 83 AGTYTAAPGDTYDALIARLNAGDVVKKATVVFTIPEGYTARQIADKLAVAWNQKPEVFLK 142 AG Y G D ++ + G+ V A FTIPEG+ QIAD L + FLK Sbjct: 103 AGEYQFTTGQAIDEILTAMVEGNTVINANR-FTIPEGWNVDQIADHLDKEGIVEKAAFLK 161 Query: 143 IIDSGAGLEAVSRLGIPENSQLRHRLEGYLFPETYELVKESTPEQVVEAMLEQLEKKLDS 202 ++ GA E IP+ + ++RLEGYLFPETYE+ K++T +VV ML Q +K+ Sbjct: 162 EVNEGAFPEYPFVAAIPKQADRKNRLEGYLFPETYEVDKDTTAHEVVSRMLAQFQKEWKP 221 Query: 203 VGGWQAKLKERGLSLHELLTVASLXXXXXXXXXXXPIVAGVIYNRLDKGQKLEIDATVQY 262 W +LK+R L+L E + +AS+ P+VAGV YNR+ L+ DATVQ+ Sbjct: 222 --EWTEQLKQRHLTLDEAVNLASIVEREVTVDKERPLVAGVYYNRIRDKWPLQADATVQF 279 Query: 263 LLDKQKERLYEKDLKVDSPYNTYKNEXXXXXXXXXXXXXXXKAALEPKASDYYFYVTKKD 322 +L KQ++RL +DLKV SPYNTY N +A + P DY+FYVTKKD Sbjct: 280 ILGKQRDRLTFEDLKVKSPYNTYTNPGLPPGPIANPGRASLEAVVNPAKHDYFFYVTKKD 339 Query: 323 GSQGHLFGKTYKEHLANIKKSEQN 346 G+ H F KT +EH AN KKS N Sbjct: 340 GTSEHYFSKTLQEHEANDKKSRGN 363 >A5D3C6.1 A5D3C6_PELTS Predicted periplasmic solute-binding protein Length = 353 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 108/297 (36%), Positives = 160/297 (53%), Gaps = 10/297 (3%) Query: 43 IEKGMGSSEIADLLEDNGIIRKGLFFKGYLKWVKEGSSFKAGTYTAAPGDTYDALIARLN 102 I G + ++ +L+ N ++R L F Y +W KAG Y + G + ++ L Sbjct: 61 IPVGATAGQVGKILKQNSLVRSSLGFTLYCRWKGLDGQIKAGEYLLSNGLSTPDILRELV 120 Query: 103 AGDVVKKATVVFTIPEGYTARQIADKLAVAWNQKPEVFLKIIDSGAGLEAVSRLGIPENS 162 G + A FT+PEG+T+ QIAD LA E F + G + R +P++ Sbjct: 121 DG---RLAVQTFTVPEGFTSAQIADLLASMGLADRERFFEAAAGGDFPYSFLR-DLPKD- 175 Query: 163 QLRHRLEGYLFPETYELVKESTPEQVVEAMLEQLEKKLDSVGGWQAKLKERGLSLHELLT 222 R RLEGYLFP+TY++ + S+ +++ ML + EK+++ + + + GL+LH+ +T Sbjct: 176 --RRRLEGYLFPDTYQVARGSSEASIIDMMLRRFEKEMNDLD-YHTRAGRLGLTLHQAVT 232 Query: 223 VASLXXXXXXXXXXXPIVAGVIYNRLDKGQKLEIDATVQYLLDKQKERLYEKDLKVDSPY 282 VAS+ PI+AGVIYNR+ L+IDATVQY + K ++Y KDL++DSPY Sbjct: 233 VASMVEREAVLEEERPIIAGVIYNRMAMSMPLQIDATVQYAIGTVKPKIYYKDLEIDSPY 292 Query: 283 NTYKNEXXXXXXXXXXXXXXXKAALEPKASDYYFYVTKKDGSQGHLFGKTYKEHLAN 339 NTYKNE AA+ P +DY +YV K DGS H F +T EH AN Sbjct: 293 NTYKNEGLPPGPIAMPGRSSLLAAVNPARTDYLYYVAKPDGS--HAFARTLDEHNAN 347 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,851,496,748 Number of extensions: 72036354 Number of successful extensions: 153338 Number of sequences better than 1.0e-05: 1225 Number of HSP's gapped: 150279 Number of HSP's successfully gapped: 1240 Length of query: 346 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 210 Effective length of database: 1,779,438,163 Effective search space: 373682014230 Effective search space used: 373682014230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)