BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0305.0007.p
         (102 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KFL5.1 B3KFL5_9BACI Putative uncharacterized protein                113   6e-24
B1DIV2.1 B1DIV2_9BACL Putative uncharacterized protein                 68   3e-10

>B3KFL5.1 B3KFL5_9BACI Putative uncharacterized protein
          Length = 104

 Score =  113 bits (282), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 59/103 (57%), Positives = 76/103 (73%), Gaps = 1/103 (0%)

Query: 1   MTDFSADQVVWTSKLKEAYGETVELEDEQGKSSIYDIIAEFEVGSRAYAVLAGSGKGAEQ 60
           M+DFS + +VWT  LKEA+GE+VELED++G   +YDI AEFEV  + YA+L    +  E+
Sbjct: 2   MSDFSVENIVWTQALKEAFGESVELEDDKGHLEVYDIAAEFEVDGQGYAILVQPDRTDEE 61

Query: 61  -EILRIVVSPDGLPELESIVDDEEWEDVSELYDELTFPADESD 102
            E+LRIV + DG  EL +I DDEEWE+VSELYDELTFP  + D
Sbjct: 62  YEVLRIVKNADGGLELATIDDDEEWENVSELYDELTFPEGDED 104


>B1DIV2.1 B1DIV2_9BACL Putative uncharacterized protein
          Length = 98

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 2/87 (2%)

Query: 16  KEAYGETVELEDEQGKSSIYDIIAEFEVGSRAYAVLAGSGKGAEQEI--LRIVVSPDGLP 73
           K  +G  +EL  E G    ++I AEF++G   YA L       EQE+   R++++ +G P
Sbjct: 10  KSGFGNVIELVSEHGSLDKFEIKAEFQLGPYVYAALQSPDMKKEQEVELFRVILTDNGEP 69

Query: 74  ELESIVDDEEWEDVSELYDELTFPADE 100
           +LE+I DD+EWE  +E YD+L F  DE
Sbjct: 70  QLETIEDDDEWELAAEAYDDLLFANDE 96


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.308    0.130    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 657,740,358
Number of extensions: 25987830
Number of successful extensions: 64075
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 64106
Number of HSP's successfully gapped: 2
Length of query: 102
Length of database: 3,060,696,203
Length adjustment: 70
Effective length of query: 32
Effective length of database: 2,401,225,153
Effective search space: 76839204896
Effective search space used: 76839204896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 126 (53.1 bits)