BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0305.0006.p
         (102 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KFL4.1 B3KFL4_9BACI Putative uncharacterized protein                130   4e-29
B1DIV3.1 B1DIV3_9BACL Putative uncharacterized protein                113   5e-24
A8VTZ9.1 A8VTZ9_9BACI Aminotransferase, class V                        60   9e-08
A7Z732.1 Y2448_BACA2 UPF0473 protein RBAM_024480                       55   1e-06
B4ALT5.1 B4ALT5_BACPU YrzB                                             53   7e-06

>B3KFL4.1 B3KFL4_9BACI Putative uncharacterized protein
          Length = 100

 Score =  130 bits (327), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/75 (88%), Positives = 73/75 (97%)

Query: 23 NEEEFEVIMKFEVDGSDAKYMMVVPLDSEDEESDEVYAFRYEEDGDDLQLFMIENDEEWA 82
          NEEEFEVIMKFEVDGSDAKYMMVVP +S +EE+DEVYAFRYEEDG+DL+LFMIE+DEEWA
Sbjct: 23 NEEEFEVIMKFEVDGSDAKYMMVVPRESAEEETDEVYAFRYEEDGEDLKLFMIEDDEEWA 82

Query: 83 IVEETFNTLVDELDG 97
          IVEETFNTLV+ELDG
Sbjct: 83 IVEETFNTLVEELDG 97


>B1DIV3.1 B1DIV3_9BACL Putative uncharacterized protein
          Length = 97

 Score =  113 bits (283), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/74 (77%), Positives = 69/74 (93%)

Query: 23 NEEEFEVIMKFEVDGSDAKYMMVVPLDSEDEESDEVYAFRYEEDGDDLQLFMIENDEEWA 82
          NEEEFEVIMKFEVDGSD+KYMMVVPL SE++E DEVYAFRYEE+GDDL+L+ IE++EEW 
Sbjct: 22 NEEEFEVIMKFEVDGSDSKYMMVVPLASENDEEDEVYAFRYEEEGDDLKLYTIEDEEEWN 81

Query: 83 IVEETFNTLVDELD 96
          +VEETFNTL+ E++
Sbjct: 82 MVEETFNTLLGEME 95


>A8VTZ9.1 A8VTZ9_9BACI Aminotransferase, class V
          Length = 100

 Score = 59.7 bits (143), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 3/70 (4%)

Query: 27 FEVIMKFEVDGSDAKYMMVVPLDSE--DEESDEVYAFRYEED-GDDLQLFMIENDEEWAI 83
          FEV+  F+VD ++  Y++V P  S+  DEE  EV+AF YEED   ++ LF IE+DEEW +
Sbjct: 27 FEVLFTFDVDATEKSYIVVTPEGSQADDEEEVEVHAFLYEEDEQGEMTLFPIESDEEWEM 86

Query: 84 VEETFNTLVD 93
          VEE  NT  D
Sbjct: 87 VEELLNTFSD 96


>A7Z732.1 Y2448_BACA2 UPF0473 protein RBAM_024480
          Length = 93

 Score = 55.5 bits (132), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 2/76 (2%)

Query: 23 NEEEFEVIMKFEVDGSDAKYMMVVPLDSEDEESDEVYAFRYE--EDGDDLQLFMIENDEE 80
          NE+  EV+  FE D  +  Y++  P+D++D++  E++A  +E  E+G+D +L  IE DEE
Sbjct: 16 NEQLCEVLFTFENDTFNKSYVLYYPIDAQDDDEIEIHASSFEPNENGEDGELMPIETDEE 75

Query: 81 WAIVEETFNTLVDELD 96
          W ++EET NT + E D
Sbjct: 76 WEMIEETLNTFLAEED 91


>B4ALT5.1 B4ALT5_BACPU YrzB
          Length = 94

 Score = 53.1 bits (126), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 2/74 (2%)

Query: 23 NEEEFEVIMKFEVDGSDAKYMMVVPLDSEDEESDEVYA--FRYEEDGDDLQLFMIENDEE 80
          NE+  EV+  FE D  +  Y++  P+  +D E  E++A  F   E+G+D +L  IE DEE
Sbjct: 16 NEQLCEVLFTFESDHFNKSYVLYYPISEQDNEEIEIHASSFTPNENGEDGELEPIETDEE 75

Query: 81 WAIVEETFNTLVDE 94
          W ++EET NT +D+
Sbjct: 76 WDMIEETLNTFLDQ 89


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.310    0.134    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 555,176,961
Number of extensions: 22281112
Number of successful extensions: 55236
Number of sequences better than 1.0e-05: 76
Number of HSP's gapped: 55482
Number of HSP's successfully gapped: 76
Length of query: 102
Length of database: 3,060,696,203
Length adjustment: 70
Effective length of query: 32
Effective length of database: 2,401,225,153
Effective search space: 76839204896
Effective search space used: 76839204896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 126 (53.1 bits)