BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0305.0005.p (139 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFL3.1 B3KFL3_9BACI Holliday junction resolvase YqgF 213 4e-54 B1DIV4.1 B1DIV4_9BACL Holliday junction resolvase YqgF 212 7e-54 C0ZAS2.1 C0ZAS2_BREBN Putative Holliday junction resolvase 184 3e-45 C0GKI3.1 C0GKI3_9FIRM Holliday junction resolvase YqgF 178 1e-43 C2MR21.1 C2MR21_BACCE Holliday junction resolvase 171 1e-41 >B3KFL3.1 B3KFL3_9BACI Holliday junction resolvase YqgF Length = 137 Score = 213 bits (542), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 99/135 (73%), Positives = 118/135 (87%) Query: 1 MMKMLGLDYGDRRIGVATSDIFGWTAQALETIERRGNGNEFERIRELVKEHEIGEIVVGL 60 M K++GLDYGDRRIGVA SD FGWTAQ +E IERR + E +RI LVK++E+GEIVVGL Sbjct: 1 MKKIMGLDYGDRRIGVAISDAFGWTAQGVEVIERRRDEGELDRIAALVKDNEVGEIVVGL 60 Query: 61 PKNMNGSVGPRGEICIEFADQLREELKMPVHLWDERLTTVSAERMLIEGDVSRKKRKGIV 120 PKNMNG++GPRGEIC+EFA+ LRE L +PVHLWDERL+TVSAER L+E DVSRKKRK +V Sbjct: 61 PKNMNGTIGPRGEICMEFANTLRESLSLPVHLWDERLSTVSAERTLLEADVSRKKRKQVV 120 Query: 121 DKMAAALILQNFLDA 135 DKMAA+LILQN+LD+ Sbjct: 121 DKMAASLILQNYLDS 135 >B1DIV4.1 B1DIV4_9BACL Holliday junction resolvase YqgF Length = 138 Score = 212 bits (540), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 97/138 (70%), Positives = 117/138 (84%) Query: 2 MKMLGLDYGDRRIGVATSDIFGWTAQALETIERRGNGNEFERIRELVKEHEIGEIVVGLP 61 M+ +GLDYGDR IGVA SD FGWTAQ LET+ +R +G E +RI ELVKEHE+ EIVVGLP Sbjct: 1 MRTMGLDYGDRNIGVAVSDAFGWTAQGLETVHKRRDGGEMDRIAELVKEHEVTEIVVGLP 60 Query: 62 KNMNGSVGPRGEICIEFADQLREELKMPVHLWDERLTTVSAERMLIEGDVSRKKRKGIVD 121 KNMN ++GPRGEI + FA+QL++ L +PVHLWDERLTTVSAER L+E DVSRKKRK ++D Sbjct: 61 KNMNNTIGPRGEISMAFAEQLQQTLNLPVHLWDERLTTVSAERTLLEADVSRKKRKLVID 120 Query: 122 KMAAALILQNFLDANSKR 139 KMAA LILQN+LD+ +KR Sbjct: 121 KMAATLILQNYLDSKTKR 138 >C0ZAS2.1 C0ZAS2_BREBN Putative Holliday junction resolvase Length = 138 Score = 184 bits (466), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 82/138 (59%), Positives = 106/138 (76%) Query: 1 MMKMLGLDYGDRRIGVATSDIFGWTAQALETIERRGNGNEFERIRELVKEHEIGEIVVGL 60 M +++GLD GD+ IGVA SD GWTAQ +ETI+R+ +F R+ ELV +++IG VVGL Sbjct: 1 MTRLMGLDVGDKTIGVAVSDELGWTAQGVETIKRQSKEKDFARLSELVSQYQIGAFVVGL 60 Query: 61 PKNMNGSVGPRGEICIEFADQLREELKMPVHLWDERLTTVSAERMLIEGDVSRKKRKGIV 120 PKNMNG++GPR E+C F L E +PVH+WDERLTT++AERMLI DVSR+KRK ++ Sbjct: 61 PKNMNGTIGPRAEMCQAFGKLLEERTSLPVHMWDERLTTMAAERMLISADVSRQKRKTVI 120 Query: 121 DKMAAALILQNFLDANSK 138 DKMAA LILQ +LDA S+ Sbjct: 121 DKMAATLILQGYLDAKSR 138 >C0GKI3.1 C0GKI3_9FIRM Holliday junction resolvase YqgF Length = 138 Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 85/135 (62%), Positives = 102/135 (75%) Query: 2 MKMLGLDYGDRRIGVATSDIFGWTAQALETIERRGNGNEFERIRELVKEHEIGEIVVGLP 61 M++LGLD GDR IGVA SD GWTAQ LE I R N+ +RIRELV E+E+ IVVG P Sbjct: 1 MRILGLDVGDRTIGVAASDALGWTAQGLEVIRRTTWENDLKRIRELVAEYEVSLIVVGYP 60 Query: 62 KNMNGSVGPRGEICIEFADQLREELKMPVHLWDERLTTVSAERMLIEGDVSRKKRKGIVD 121 KNMN +VGPR ++ EFAD+L EL +PV LWDERLTT+ AER L+ D+SR KRK ++D Sbjct: 61 KNMNNTVGPRAKLSEEFADKLSAELNLPVKLWDERLTTMEAERTLLSADMSRAKRKKVID 120 Query: 122 KMAAALILQNFLDAN 136 KMAA LILQN+L AN Sbjct: 121 KMAAVLILQNYLQAN 135 >C2MR21.1 C2MR21_BACCE Holliday junction resolvase Length = 137 Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 84/137 (61%), Positives = 110/137 (80%), Gaps = 4/137 (2%) Query: 2 MKMLGLDYGDRRIGVATSDIFGWTAQALETI---ERRGNGNEFERIRELVKEHEIGEIVV 58 M++LGLD G + +GVA SD GWTAQ LETI E RG+ F+RI ELVK++++ +IVV Sbjct: 1 MRILGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGHFG-FDRISELVKQYDVDKIVV 59 Query: 59 GLPKNMNGSVGPRGEICIEFADQLREELKMPVHLWDERLTTVSAERMLIEGDVSRKKRKG 118 GLPKNMNG++GPRGE C +FA+ LRE L++ V +WDERL+T++AER+LI DVSRKKRK Sbjct: 60 GLPKNMNGTIGPRGEACQQFAENLRELLQLDVVMWDERLSTMAAERLLISADVSRKKRKQ 119 Query: 119 IVDKMAAALILQNFLDA 135 ++DKMAA +ILQ FLD+ Sbjct: 120 VIDKMAAVVILQGFLDS 136 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 794,078,037 Number of extensions: 31335830 Number of successful extensions: 86431 Number of sequences better than 1.0e-05: 1367 Number of HSP's gapped: 85280 Number of HSP's successfully gapped: 1367 Length of query: 139 Length of database: 3,060,696,203 Length adjustment: 103 Effective length of query: 36 Effective length of database: 2,090,331,658 Effective search space: 75251939688 Effective search space used: 75251939688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)