BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0305.0004.p
         (91 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KFL2.1 B3KFL2_9BACI Putative uncharacterized protein                161   2e-38
B1DIV5.1 B1DIV5_9BACL Putative uncharacterized protein                137   3e-31
A8FFM8.2 Y2379_BACP2 UPF0297 protein BPUM_2379                        120   4e-26
A7Z734.1 Y2450_BACA2 UPF0297 protein RBAM_024500                      119   7e-26
Q7WY61.1 YRZL_BACSU UPF0297 protein yrzL                              119   8e-26

>B3KFL2.1 B3KFL2_9BACI Putative uncharacterized protein
          Length = 86

 Score =  161 bits (407), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/86 (87%), Positives = 85/86 (98%)

Query: 1  MDSMDKTVKFNVKGDEKEASSEEILLAVYDALVEKEYHPINQIVGYLISGDPAYIPRHNN 60
          MDSMDKTVKFNVKGDEKEAS+++ILL+VYD+LVEKEY+PINQIVGYL+SGDPAYIPRHNN
Sbjct: 1  MDSMDKTVKFNVKGDEKEASAQDILLSVYDSLVEKEYNPINQIVGYLLSGDPAYIPRHNN 60

Query: 61 ARSLVRRKERDELIEELVRFYLVNHR 86
          ARSL+R+KERDELIEELVRFYL +HR
Sbjct: 61 ARSLIRKKERDELIEELVRFYLASHR 86


>B1DIV5.1 B1DIV5_9BACL Putative uncharacterized protein
          Length = 85

 Score =  137 bits (346), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/86 (76%), Positives = 79/86 (91%), Gaps = 1/86 (1%)

Query: 1  MDSMDKTVKFNVKGDEKEASSEEILLAVYDALVEKEYHPINQIVGYLISGDPAYIPRHNN 60
          M+SMD T+KFNVK  E E+SS++ILL V++AL+EKEY+PINQIVGYL+SGDPAYIPRHNN
Sbjct: 1  MNSMDNTMKFNVKA-EGESSSQDILLTVHEALLEKEYNPINQIVGYLLSGDPAYIPRHNN 59

Query: 61 ARSLVRRKERDELIEELVRFYLVNHR 86
          ARSL+R+KERDELIEELVRFYL N +
Sbjct: 60 ARSLIRKKERDELIEELVRFYLNNKK 85


>A8FFM8.2 Y2379_BACP2 UPF0297 protein BPUM_2379
          Length = 88

 Score =  120 bits (301), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 68/86 (79%)

Query: 1  MDSMDKTVKFNVKGDEKEASSEEILLAVYDALVEKEYHPINQIVGYLISGDPAYIPRHNN 60
          M S DKT+KFN   D  E +  E+L+ VYDAL EK Y+PINQIVGYL+SGDPAYIPRH +
Sbjct: 1  MSSFDKTMKFNFSDDSAETNVNEVLITVYDALQEKGYNPINQIVGYLLSGDPAYIPRHQD 60

Query: 61 ARSLVRRKERDELIEELVRFYLVNHR 86
          AR+L+R+ ERDELIEELV+ YL  H+
Sbjct: 61 ARNLIRKLERDELIEELVKSYLETHK 86


>A7Z734.1 Y2450_BACA2 UPF0297 protein RBAM_024500
          Length = 88

 Score =  119 bits (299), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 68/86 (79%)

Query: 1  MDSMDKTVKFNVKGDEKEASSEEILLAVYDALVEKEYHPINQIVGYLISGDPAYIPRHNN 60
          M S DKT+KFN   D  E + EE+L  VYDAL EK Y+PINQIVGYL+SGDPAYIPRH +
Sbjct: 1  MSSFDKTMKFNFSDDSAETNVEEVLNTVYDALQEKGYNPINQIVGYLLSGDPAYIPRHRD 60

Query: 61 ARSLVRRKERDELIEELVRFYLVNHR 86
          AR+L+R+ ERDELIEELV+ YL  H+
Sbjct: 61 ARNLIRKLERDELIEELVKSYLEQHK 86


>Q7WY61.1 YRZL_BACSU UPF0297 protein yrzL
          Length = 88

 Score =  119 bits (298), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 68/86 (79%)

Query: 1  MDSMDKTVKFNVKGDEKEASSEEILLAVYDALVEKEYHPINQIVGYLISGDPAYIPRHNN 60
          M S DKT+KFN   D  E +  E+L+ VYDAL EK Y+PINQIVGYL+SGDPAYIPRH +
Sbjct: 1  MSSFDKTMKFNFSDDSAETNVNEVLITVYDALQEKGYNPINQIVGYLLSGDPAYIPRHRD 60

Query: 61 ARSLVRRKERDELIEELVRFYLVNHR 86
          AR+L+R+ ERDELIEELV+ YL  H+
Sbjct: 61 ARNLIRKLERDELIEELVKSYLEQHK 86


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.136    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 524,910,695
Number of extensions: 18335325
Number of successful extensions: 51351
Number of sequences better than 1.0e-05: 370
Number of HSP's gapped: 51321
Number of HSP's successfully gapped: 370
Length of query: 91
Length of database: 3,060,696,203
Length adjustment: 60
Effective length of query: 31
Effective length of database: 2,495,435,303
Effective search space: 77358494393
Effective search space used: 77358494393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)