BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0305.0003.p (878 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFL1.1 B3KFL1_9BACI Alanyl-tRNA synthetase EC=6.1.1.7 1306 0.0 B1DIV6.1 B1DIV6_9BACL Alanyl-tRNA synthetase EC=6.1.1.7 1238 0.0 C0ZAS0.1 C0ZAS0_BREBN Alanyl-tRNA synthetase EC=6.1.1.7 1085 0.0 C2N6Q8.1 C2N6Q8_BACCE Alanyl-tRNA synthetase 1057 0.0 C3ER02.1 C3ER02_BACTK Alanyl-tRNA synthetase 1057 0.0 >B3KFL1.1 B3KFL1_9BACI Alanyl-tRNA synthetase EC=6.1.1.7 Length = 875 Score = 1306 bits (3379), Expect = 0.0, Method: Compositional matrix adjust. Identities = 630/837 (75%), Positives = 703/837 (83%), Gaps = 2/837 (0%) Query: 2 MKASEIRSKWLQFFESKGHRIEPSASLVPHNDPSLLWINAGMAPLKAYFDGREIPENPRL 61 MKASEIRSKWL+FF KGH IEPSASLVPHNDPSLLWINAGMAPLK YFDGR PENPR+ Sbjct: 1 MKASEIRSKWLEFFAEKGHNIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVKPENPRI 60 Query: 62 TNSQKCIRTNDIENVGKTRRHHTFFEMLGNFSIGDYFKEEAITWAWEFLTGKEWIGFDPN 121 NSQKCIRTNDIENVGKTRRHHTFFEMLGNFSIGDYFKEE ITWAWEFLT K+WIGFDP Sbjct: 61 ANSQKCIRTNDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKKWIGFDPE 120 Query: 122 RISVTVYAEDEEAFKLWNEKVGLPAERIIKLGDDNFWDIGEGPCGPCSEIFYDRGEAYGS 181 ++SVTVY EDEEA+KLWNEK+GLP ERIIKL DNFWDIGEGPCGPC+EIFYDRGE Y + Sbjct: 121 KLSVTVYPEDEEAYKLWNEKIGLPKERIIKL-QDNFWDIGEGPCGPCTEIFYDRGEGYDT 179 Query: 182 DLSDPEMYPGGENERWLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASILQDVD 241 + + EM+PGGENERWLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASILQ+V Sbjct: 180 EAPESEMFPGGENERWLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASILQNVA 239 Query: 242 SNFDTDLFQPIIQKTAKLAGVTYKDNLEQDIALKVIADHIRTVTFAVGDGVLPSNEXXXX 301 SNFDTDLFQPIIQKTA+LAGV Y + E DIALKVIADHIRTV FAVGDGVLPSNE Sbjct: 240 SNFDTDLFQPIIQKTAELAGVKYNEKTEYDIALKVIADHIRTVAFAVGDGVLPSNEGRGY 299 Query: 302 XXXXXXXXAVRYGKTLGLDRPFLFGLTETVGEVMGVYYPSVVENREYIAKIIRTEEERFH 361 AVRYGK LGLD+PF++ LT TVG++MGVYYP VVE R +I K+I TEEE+FH Sbjct: 300 VIRRLLRRAVRYGKVLGLDKPFMYTLTGTVGDIMGVYYPEVVEKRAFIEKVIATEEEQFH 359 Query: 362 ETLSDGLAILGEISAKAKADGRSAIAGADAFKLYDTYGFPFDLTEDFASEQGLTVDREGF 421 +TLSDGL IL ++SA+AK G+S I+G DAFKLYDTYGFPFDLTED+ASE GLTVDREGF Sbjct: 360 KTLSDGLNILADVSAEAKKQGKSVISGNDAFKLYDTYGFPFDLTEDYASEHGLTVDREGF 419 Query: 422 XXXXXXXXXXXXXXXXXGGSMKVQGGPLAELTVKSEFVGYNDTVAESKILAIVVDGELAE 481 SMKVQGG L++ TVKSEFVGYNDTV+E+K+LAIV A+ Sbjct: 420 DAAMKEQRDRARAARHETESMKVQGGVLSDYTVKSEFVGYNDTVSEAKVLAIVSGDSFAD 479 Query: 482 TAGEGTDCQVILESTPFYAESGGQVSDTGLLTGGSVTAKVTGLFKAPHGQHVHLVTVEAG 541 + EG CQVIL+ TPFYAESGGQVSD G+L GGSV A+V GLFKAPHGQHVH VTVE G Sbjct: 480 SVSEGETCQVILDVTPFYAESGGQVSDQGMLEGGSVRARVEGLFKAPHGQHVHFVTVELG 539 Query: 542 ELRVGDSVRAEVNREQREDIVKNHTATHLLHKALKEVLGGHVNQAGSLVEGARLRFDFSH 601 EL+VGD+V+A+V+ R DIVKNHTATHLLHKALKEVLG HVNQAGSLVE RLRFDFSH Sbjct: 540 ELKVGDTVKAQVDSAMRNDIVKNHTATHLLHKALKEVLGEHVNQAGSLVEPQRLRFDFSH 599 Query: 602 FGAITPEELSDIEHRVNAQIWRGLDVVIENKPIDEAKAMGAMALFGEKYGNIVRVVQVGD 661 FG+IT EEL+DIE RVN Q+W+ + VVIE K IDEAKAMGAMALFGEKYG+IVRVVQVGD Sbjct: 600 FGSITQEELADIERRVNEQVWKSVPVVIERKAIDEAKAMGAMALFGEKYGDIVRVVQVGD 659 Query: 662 YSLELCGGIHVLNTSQIGIFKLVSESGIGSGVRRIEAVTGRYAYQFTESQLDLLKQSAGL 721 YS+ELCGG HV NTSQIGIFKL+ ESGIGSGVRRIEAVTGRYAY+ E Q+DLLKQ+AGL Sbjct: 660 YSIELCGGCHVDNTSQIGIFKLLGESGIGSGVRRIEAVTGRYAYEHLEGQMDLLKQAAGL 719 Query: 722 LKSSLNDVPKRIEALHAQVRELSRENESLQSMLSATFAAELTSSVKTVGSGTQLLAVAVQ 781 LKS+L DVPKRIE L+ QV++L+RENESLQ L A A++LT VK VG+ T LLA VQ Sbjct: 720 LKSNLADVPKRIEGLNQQVKDLARENESLQGKLGAIEASQLTDKVKQVGN-TSLLAAEVQ 778 Query: 782 AGNMDALRSTADELKSKLPDAVLVLGAAMDDKVNFVVSVPQSLVQKGFHAGKLVKEI 838 AG+MD LR ADELK KLP+ +LVLG+ DKVNFVV+VPQ LV++G+HAGKLVKE+ Sbjct: 779 AGSMDGLRGIADELKGKLPETILVLGSKAGDKVNFVVAVPQELVKQGYHAGKLVKEV 835 >B1DIV6.1 B1DIV6_9BACL Alanyl-tRNA synthetase EC=6.1.1.7 Length = 877 Score = 1238 bits (3204), Expect = 0.0, Method: Compositional matrix adjust. Identities = 602/836 (72%), Positives = 681/836 (81%), Gaps = 3/836 (0%) Query: 2 MKASEIRSKWLQFFESKGHRIEPSASLVPHNDPSLLWINAGMAPLKAYFDGREIPENPRL 61 MKASEIRSKWL FFESK H IEPSASLVPHNDPSLLWINAGMAPLK YFDGR IP+NPR+ Sbjct: 1 MKASEIRSKWLSFFESKRHHIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVIPDNPRI 60 Query: 62 TNSQKCIRTNDIENVGKTRRHHTFFEMLGNFSIGDYFKEEAITWAWEFLTGKEWIGFDPN 121 TNSQKCIRTNDIENVGKTRRHHTFFEMLGNFSIGDYFKEE ITWAWEFLT KEWIGFDP+ Sbjct: 61 TNSQKCIRTNDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTSKEWIGFDPD 120 Query: 122 RISVTVYAEDEEAFKLWNEKVGLPAERIIKLGDDNFWDIGEGPCGPCSEIFYDRGEAYGS 181 R+SVTVY EDEEA+K WNEK+GLPAERI KL D+NFWDIGEGPCGPC+EIFYDRGE YG Sbjct: 121 RLSVTVYPEDEEAYKYWNEKIGLPAERIYKL-DENFWDIGEGPCGPCTEIFYDRGEKYG- 178 Query: 182 DLSDPEMYPGGENERWLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASILQDVD 241 DL+DPE +PGGENER+LEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASILQDVD Sbjct: 179 DLNDPECWPGGENERFLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASILQDVD 238 Query: 242 SNFDTDLFQPIIQKTAKLAGVTYKDNLEQDIALKVIADHIRTVTFAVGDGVLPSNEXXXX 301 SNFDTDLF PII++T ++A V Y N E D+ALKVIADHIRTV FAVGDGV+PSNE Sbjct: 239 SNFDTDLFIPIIERTCEIASVKYHVNDEHDVALKVIADHIRTVAFAVGDGVMPSNEGRGY 298 Query: 302 XXXXXXXXAVRYGKTLGLDRPFLFGLTETVGEVMGVYYPSVVENREYIAKIIRTEEERFH 361 AVRYGKT+G+DRPFL+ LT VGEVMGVYYP VV+ RE+I ++IRTEEERFH Sbjct: 299 IIRRLLRRAVRYGKTIGIDRPFLYELTSVVGEVMGVYYPEVVDKREFIERVIRTEEERFH 358 Query: 362 ETLSDGLAILGEISAKAKADGRSAIAGADAFKLYDTYGFPFDLTEDFASEQGLTVDREGF 421 ETLSDGL +L ++ A A+ G + I G DAF+LYDTYGFPFDLTEDFASE G+TVDREGF Sbjct: 359 ETLSDGLVMLSDLVATARKAGTTEIGGEDAFRLYDTYGFPFDLTEDFASENGMTVDREGF 418 Query: 422 XXXXXXXXXXXXXXXXXGGSMKVQGGPLAELTVKSEFVGYNDTVAESKILAIVVDGELAE 481 G M VQGGPLA+ TVKSEFVGYN+ V E++I AIV + L + Sbjct: 419 DAAMEAQRERARAARQDTGGMNVQGGPLADFTVKSEFVGYNELVTEAQITAIVHEDSLVD 478 Query: 482 TAGEGTDCQVILESTPFYAESGGQVSDTGLLTGGSVTAKVTGLFKAPHGQHVHLVTVEAG 541 GEG+ V+L+ TPFYAESGGQ+ D G + G T +V + KAPHGQ VH V +G Sbjct: 479 LVGEGSRVLVLLDRTPFYAESGGQIGDKGTIVGNGFTLQVEDVTKAPHGQSVHHAVVASG 538 Query: 542 ELRVGDSVRAEVNREQREDIVKNHTATHLLHKALKEVLGGHVNQAGSLVEGARLRFDFSH 601 +R G++V A V R RED++KNHTATHLLHKALKEVLG HVNQAGSLV+ RLRFDFSH Sbjct: 539 TVRTGETVEAVVIRSVREDVIKNHTATHLLHKALKEVLGDHVNQAGSLVQADRLRFDFSH 598 Query: 602 FGAITPEELSDIEHRVNAQIWRGLDVVIENKPIDEAKAMGAMALFGEKYGNIVRVVQVGD 661 FG+ITPEEL++IE +VN QIW G VVIE+K I EAKAMGAMALFGEKYG+IVRVVQVG+ Sbjct: 599 FGSITPEELTEIERKVNEQIWIGTPVVIESKQIAEAKAMGAMALFGEKYGDIVRVVQVGN 658 Query: 662 YSLELCGGIHVLNTSQIGIFKLVSESGIGSGVRRIEAVTGRYAYQFTESQLDLLKQSAGL 721 YS+ELCGG HV NTSQIG+FKLVSESGIGSGVRRIEAVTGR+AY + E QLDLLKQ++ L Sbjct: 659 YSIELCGGCHVANTSQIGMFKLVSESGIGSGVRRIEAVTGRHAYSYMEGQLDLLKQASAL 718 Query: 722 LKSSLNDVPKRIEALHAQVRELSRENESLQSMLSATFAAELTSSVKTVGSGTQLLAVAVQ 781 LK++ NDVPKRIEAL AQV+EL RENESLQ+ LS A L + KTVG T +L+ V Sbjct: 719 LKANNNDVPKRIEALFAQVKELGRENESLQAKLSRIEAGSLEQNAKTVGDVT-VLSAKVS 777 Query: 782 AGNMDALRSTADELKSKLPDAVLVLGAAMDDKVNFVVSVPQSLVQKGFHAGKLVKE 837 A MDALR ADELK+KLP AV++LGA +DKV+ V +V LV+KGFHAGK+VKE Sbjct: 778 APTMDALRGIADELKAKLPSAVIILGAVQEDKVSLVAAVSADLVKKGFHAGKIVKE 833 >C0ZAS0.1 C0ZAS0_BREBN Alanyl-tRNA synthetase EC=6.1.1.7 Length = 882 Score = 1085 bits (2806), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/838 (62%), Positives = 637/838 (76%), Gaps = 3/838 (0%) Query: 2 MKASEIRSKWLQFFESKGHRIEPSASLVPHNDPSLLWINAGMAPLKAYFDGREIPENPRL 61 + ++IR +L FF KGHRIEPSA LVP +DPSLLWIN+G+A LK YFDGR IP+NPR+ Sbjct: 4 LTGNQIRQMFLDFFVEKGHRIEPSAPLVPIDDPSLLWINSGVATLKKYFDGRIIPDNPRI 63 Query: 62 TNSQKCIRTNDIENVGKTRRHHTFFEMLGNFSIGDYFKEEAITWAWEFLTGKEWIGFDPN 121 TNSQK IRTNDIENVG+T RHHTFFEMLGNFSIG+YFKEEAI WAWEFLT +WIGFDP Sbjct: 64 TNSQKSIRTNDIENVGRTARHHTFFEMLGNFSIGEYFKEEAIEWAWEFLTSPKWIGFDPE 123 Query: 122 RISVTVYAEDEEAFKLWNEKVGLPAERIIKLGDDNFWDIGEGPCGPCSEIFYDRGEAYGS 181 +SVT++ EDEEAF+LWN+K+G+P ERII+L + NFWDIGEGP GP +EIFYDRGEA+G+ Sbjct: 124 LLSVTIHPEDEEAFELWNKKIGVPEERIIRL-EGNFWDIGEGPSGPNTEIFYDRGEAFGN 182 Query: 182 DLSDPEMYPGGENERWLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASILQDVD 241 D SDPE+YPGGENER+LE+WNLVFSQFNHN DG+YTPLP KNIDTG GLER S++Q VD Sbjct: 183 DPSDPELYPGGENERYLEIWNLVFSQFNHNPDGTYTPLPKKNIDTGMGLERMTSVIQGVD 242 Query: 242 SNFDTDLFQPIIQKTAKLAGVTYKDNLEQDIALKVIADHIRTVTFAVGDGVLPSNEXXXX 301 +NF+TDL P+I+KT +++GV YK + E D+ALKVIADH RTV FA+GDG LPSNE Sbjct: 243 NNFETDLLFPLIEKTTEISGVKYKTSPEMDVALKVIADHARTVVFAIGDGALPSNEGRGY 302 Query: 302 XXXXXXXXAVRYGKTLGLDRPFLFGLTETVGEVMGVYYPSVVENREYIAKIIRTEEERFH 361 AVR GK LG+++PFL+ LTETVG +MG +YP VV+ R +I K+IR EEERFH Sbjct: 303 VIRRLLRRAVRMGKKLGVEKPFLYSLTETVGTMMGEFYPEVVQKRAFIEKVIRAEEERFH 362 Query: 362 ETLSDGLAILGEISAKAKADGRSAIAGADAFKLYDTYGFPFDLTEDFASEQGLTVDREGF 421 ETL+DGLAIL ++ AK G++ ++G D FK+YDTYGFP DLTEDFA EQGLTVDR+GF Sbjct: 363 ETLNDGLAILSDMVKAAKDSGKTQLSGQDVFKMYDTYGFPVDLTEDFADEQGLTVDRDGF 422 Query: 422 XXXXXXXXXXXXXXXXXGGSMKVQGGPLAELTVKSEFVGYNDTVAESKILAIVVDGELAE 481 SM++QGGPL++LTV S+FVGY + VA K+ AI++D +L E Sbjct: 423 DKAMEEQRERARAARQDVDSMQIQGGPLSDLTVTSQFVGYTELVATGKVEAIILDNQLVE 482 Query: 482 TAGEGTDCQVILESTPFYAESGGQVSDTGLLTGGSVTAKVTGLFKAPHGQHVHLVTVEAG 541 A EG QV+L TPFYAESGGQ++D G L V A+VT + K P GQ+VH V VEAG Sbjct: 483 EAEEGQTVQVVLSQTPFYAESGGQINDEGFLISDIVKARVTDVQKGPMGQNVHSVIVEAG 542 Query: 542 ELRVGDSVRAEVNREQREDIVKNHTATHLLHKALKEVLGGHVNQAGSLVEGARLRFDFSH 601 LR GD VRAEVNRE R I +NHTATHLLH+ALK+VLG HVNQAGSLV RLRFDF+H Sbjct: 543 TLRKGDDVRAEVNREARLAITQNHTATHLLHQALKDVLGTHVNQAGSLVAPERLRFDFTH 602 Query: 602 FGAITPEELSDIEHRVNAQIWRGLDVVIENKPIDEAKAMGAMALFGEKYGNIVRVVQVGD 661 +ITPEEL IE VN ++W L V I NKP+ EAKAMGAMALFGEKYG++VRVV+VG+ Sbjct: 603 ISSITPEELERIEAIVNEKVWANLGVEISNKPLAEAKAMGAMALFGEKYGDVVRVVKVGE 662 Query: 662 YSLELCGGIHVLNTSQIGIFKLVSESGIGSGVRRIEAVTGRYAYQFTESQLDLLKQSAGL 721 YSLELCGG HV NT++IG+FKLVSESGIG+G RRIEAVTGR AYQF Q LK+ A Sbjct: 663 YSLELCGGCHVNNTAEIGLFKLVSESGIGAGTRRIEAVTGRGAYQFLNQQFTTLKEVAQA 722 Query: 722 LKSS-LNDVPKRIEALHAQVRELSRENESLQSMLSATFAAELTSSVKTVGSGTQLLAVAV 780 LK+ L + P R+E L Q++E+ RENESL++ L AA LT ++ V G +LA V Sbjct: 723 LKAPVLAEAPARVEGLQQQLKEVQRENESLRAKLGNIEAASLTDKLQQV-DGMNVLAARV 781 Query: 781 QAGNMDALRSTADELKSKLPDAVLVLGAAMDDKVNFVVSVPQSLVQKGFHAGKLVKEI 838 A +MD LR DELK+KL AV+VLGA DKVN V V + L+ +G HAGK++KE+ Sbjct: 782 SAVDMDNLRGMVDELKNKLGSAVIVLGAVDGDKVNLVAGVTKDLMDQGIHAGKIIKEV 839 >C2N6Q8.1 C2N6Q8_BACCE Alanyl-tRNA synthetase Length = 880 Score = 1057 bits (2734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 508/838 (60%), Positives = 629/838 (75%), Gaps = 3/838 (0%) Query: 2 MKASEIRSKWLQFFESKGHRIEPSASLVPHNDPSLLWINAGMAPLKAYFDGREIPENPRL 61 + ++IR +L FF+ KGH +EPSASLVPH DPSLLWIN+G+A LK YFDGR IP+NPR+ Sbjct: 4 LTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRI 63 Query: 62 TNSQKCIRTNDIENVGKTRRHHTFFEMLGNFSIGDYFKEEAITWAWEFLTGKEWIGFDPN 121 TN+QK IRTNDIENVGKT RHHTFFEMLGNFSIGDYFKEEAITWAWEFLT +WIGFD Sbjct: 64 TNAQKSIRTNDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDKE 123 Query: 122 RISVTVYAEDEEAFKLWNEKVGLPAERIIKLGDDNFWDIGEGPCGPCSEIFYDRGEAYGS 181 +SVT++ EDEEAF +WNEK+G+P ERII+L ++NFWDIGEGP GP +EIFYDRGEAYG+ Sbjct: 124 LLSVTIHPEDEEAFTIWNEKMGVPKERIIRL-EENFWDIGEGPSGPNTEIFYDRGEAYGN 182 Query: 182 DLSDPEMYPGGENERWLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASILQDVD 241 D SDPE+YPGGENER+LEVWNLVFSQFNHN DGSYTPLP KNIDTG GLER SI+QDV Sbjct: 183 DFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSIVQDVP 242 Query: 242 SNFDTDLFQPIIQKTAKLAGVTYKD-NLEQDIALKVIADHIRTVTFAVGDGVLPSNEXXX 300 +NFDTDLF P+I T ++G Y++ +LE+D+A KVIADHIRTVTFAVGDG LPSNE Sbjct: 243 TNFDTDLFMPMIGATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPSNEGRG 302 Query: 301 XXXXXXXXXAVRYGKTLGLDRPFLFGLTETVGEVMGVYYPSVVENREYIAKIIRTEEERF 360 AVRY K L ++RPF+F L VGEVM +YP V+E +++IAK+++ EEERF Sbjct: 303 YVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKNEEERF 362 Query: 361 HETLSDGLAILGEISAKAKADGRSAIAGADAFKLYDTYGFPFDLTEDFASEQGLTVDREG 420 HETL DG AIL E+ AKAK + + I+G DAF+LYDTYGFP +LTE++A E G+TVD EG Sbjct: 363 HETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMTVDHEG 422 Query: 421 FXXXXXXXXXXXXXXXXXGGSMKVQGGPLAELTVKSEFVGYNDTVAESKILAIVVDGELA 480 F SM+VQGG L E+ V SEFVGY AES ++A+V +GE Sbjct: 423 FENEMEKQRERARAARQDVDSMQVQGGVLGEIKVASEFVGYGTVAAESNVVALVKNGEYT 482 Query: 481 ETAGEGTDCQVILESTPFYAESGGQVSDTGLLTGGSVTAKVTGLFKAPHGQHVHLVTVEA 540 ++ G + Q+IL+ TPFYAESGGQ++D G L V V + KAP+GQ++H V VE Sbjct: 483 DSLQAGEEGQLILDVTPFYAESGGQIADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEE 542 Query: 541 GELRVGDSVRAEVNREQREDIVKNHTATHLLHKALKEVLGGHVNQAGSLVEGARLRFDFS 600 G L +V+A ++ + R +VKNHTATHLLH+ALK+VLG HVNQAGSLV RLRFDFS Sbjct: 543 GTLTKDAAVKAIIDTKNRSSVVKNHTATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFS 602 Query: 601 HFGAITPEELSDIEHRVNAQIWRGLDVVIENKPIDEAKAMGAMALFGEKYGNIVRVVQVG 660 HFG + +EL IE VN +IW +DV I K I+EAK MGAMALFGEKYG++VRVVQVG Sbjct: 603 HFGQVQADELEKIERMVNEKIWESIDVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQVG 662 Query: 661 DYSLELCGGIHVLNTSQIGIFKLVSESGIGSGVRRIEAVTGRYAYQFTESQLDLLKQSAG 720 DYSLELCGG HV NT+ IGIFK+V+ESGIG+G RRIEAVTG+ AY+ Q+ LLK++AG Sbjct: 663 DYSLELCGGCHVDNTASIGIFKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAG 722 Query: 721 LLKSSLNDVPKRIEALHAQVRELSRENESLQSMLSATFAAELTSSVKTVGSGTQLLAVAV 780 +K++ D+ R++ L A+V++L +ENESL + LS A LT SV TV G +LA V Sbjct: 723 KMKTNPKDILTRVDGLFAEVKQLQKENESLAAKLSNIEAGNLTDSVMTV-DGVNVLAAKV 781 Query: 781 QAGNMDALRSTADELKSKLPDAVLVLGAAMDDKVNFVVSVPQSLVQKGFHAGKLVKEI 838 +M+ LR+ D+LK+KL AV+VL + DDKVN + V + L+ +G+HAGKLVKE+ Sbjct: 782 NVADMNNLRTMMDDLKNKLESAVVVLASVNDDKVNILAGVTKDLISQGYHAGKLVKEV 839 >C3ER02.1 C3ER02_BACTK Alanyl-tRNA synthetase Length = 880 Score = 1057 bits (2733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 507/838 (60%), Positives = 628/838 (74%), Gaps = 3/838 (0%) Query: 2 MKASEIRSKWLQFFESKGHRIEPSASLVPHNDPSLLWINAGMAPLKAYFDGREIPENPRL 61 + ++IR +L FF+ KGH +EPSASLVPH DPSLLWIN+G+A LK YFDGR IP+NPR+ Sbjct: 4 LTGAQIRQMFLDFFQEKGHAVEPSASLVPHEDPSLLWINSGVATLKKYFDGRVIPQNPRI 63 Query: 62 TNSQKCIRTNDIENVGKTRRHHTFFEMLGNFSIGDYFKEEAITWAWEFLTGKEWIGFDPN 121 TN+QK IRTNDIENVGKT RHHTFFEMLGNFSIGDYFKEEAITWAWEFLT +WIGFD Sbjct: 64 TNAQKSIRTNDIENVGKTARHHTFFEMLGNFSIGDYFKEEAITWAWEFLTSDKWIGFDKE 123 Query: 122 RISVTVYAEDEEAFKLWNEKVGLPAERIIKLGDDNFWDIGEGPCGPCSEIFYDRGEAYGS 181 +SVT++ EDEEAF +WNEK+G+P ERII+L ++NFWDIGEGP GP +EIFYDRGEAYG+ Sbjct: 124 LLSVTIHPEDEEAFTIWNEKMGVPKERIIRL-EENFWDIGEGPSGPNTEIFYDRGEAYGN 182 Query: 182 DLSDPEMYPGGENERWLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASILQDVD 241 D SDPE+YPGGENER+LEVWNLVFSQFNHN DGSYTPLP KNIDTG GLER SI+QDV Sbjct: 183 DFSDPELYPGGENERYLEVWNLVFSQFNHNPDGSYTPLPKKNIDTGMGLERMTSIVQDVP 242 Query: 242 SNFDTDLFQPIIQKTAKLAGVTYKD-NLEQDIALKVIADHIRTVTFAVGDGVLPSNEXXX 300 +NFDTDLF P+I T ++G Y++ +LE+D+A KVIADHIRTVTFAVGDG LPSNE Sbjct: 243 TNFDTDLFMPMIDATETISGEKYRNGDLEKDMAFKVIADHIRTVTFAVGDGALPSNEGRG 302 Query: 301 XXXXXXXXXAVRYGKTLGLDRPFLFGLTETVGEVMGVYYPSVVENREYIAKIIRTEEERF 360 AVRY K L ++RPF+F L VGEVM +YP V+E +++IAK+++ EEERF Sbjct: 303 YVLRRLLRRAVRYSKKLNINRPFMFELVPVVGEVMKDFYPEVLEKKDFIAKVVKNEEERF 362 Query: 361 HETLSDGLAILGEISAKAKADGRSAIAGADAFKLYDTYGFPFDLTEDFASEQGLTVDREG 420 HETL DG AIL E+ AKAK + + I+G DAF+LYDTYGFP +LTE++A E G+TVD EG Sbjct: 363 HETLHDGEAILAEVIAKAKEEKTTVISGVDAFRLYDTYGFPIELTEEYAEEAGMTVDHEG 422 Query: 421 FXXXXXXXXXXXXXXXXXGGSMKVQGGPLAELTVKSEFVGYNDTVAESKILAIVVDGELA 480 F SM+VQGG L E+ V SEFVGY ES ++A+V +GE Sbjct: 423 FENEMEKQRERARAARQDVDSMQVQGGVLGEIKVASEFVGYGTVATESNVVALVKNGEYT 482 Query: 481 ETAGEGTDCQVILESTPFYAESGGQVSDTGLLTGGSVTAKVTGLFKAPHGQHVHLVTVEA 540 ++ G + Q+IL+ TPFYAESGGQ++D G L V V + KAP+GQ++H V VE Sbjct: 483 DSLQAGEEGQLILDVTPFYAESGGQIADRGYLLADGVKVLVKDVQKAPNGQNLHKVVVEE 542 Query: 541 GELRVGDSVRAEVNREQREDIVKNHTATHLLHKALKEVLGGHVNQAGSLVEGARLRFDFS 600 G L +V+A ++ + R +VKNHTATHLLH+ALK+VLG HVNQAGSLV RLRFDFS Sbjct: 543 GTLTKDAAVKAIIDTKNRSSVVKNHTATHLLHQALKDVLGTHVNQAGSLVTSERLRFDFS 602 Query: 601 HFGAITPEELSDIEHRVNAQIWRGLDVVIENKPIDEAKAMGAMALFGEKYGNIVRVVQVG 660 HFG + +EL IE VN +IW +DV I K I+EAK MGAMALFGEKYG++VRVVQVG Sbjct: 603 HFGQVQADELEKIERMVNEKIWESIDVEISQKAIEEAKEMGAMALFGEKYGDVVRVVQVG 662 Query: 661 DYSLELCGGIHVLNTSQIGIFKLVSESGIGSGVRRIEAVTGRYAYQFTESQLDLLKQSAG 720 DYSLELCGG HV NT+ IGIFK+V+ESGIG+G RRIEAVTG+ AY+ Q+ LLK++AG Sbjct: 663 DYSLELCGGCHVENTASIGIFKIVAESGIGAGTRRIEAVTGKSAYELMNDQVGLLKEAAG 722 Query: 721 LLKSSLNDVPKRIEALHAQVRELSRENESLQSMLSATFAAELTSSVKTVGSGTQLLAVAV 780 +K++ D+ R++ L A+V++L +ENESL + LS A LT SV TV G +LA V Sbjct: 723 KMKTNPKDILTRVDGLFAEVKQLQKENESLAAKLSNIEAGNLTDSVMTV-DGVNVLAAKV 781 Query: 781 QAGNMDALRSTADELKSKLPDAVLVLGAAMDDKVNFVVSVPQSLVQKGFHAGKLVKEI 838 +M+ LR+ D+LK+KL AV+VL + DDKVN + V + L+ +G+HAGKLVKE+ Sbjct: 782 NVADMNNLRTMMDDLKNKLESAVVVLASVNDDKVNILAGVTKDLISQGYHAGKLVKEV 839 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,874,079,373 Number of extensions: 210445699 Number of successful extensions: 539462 Number of sequences better than 1.0e-05: 2475 Number of HSP's gapped: 524411 Number of HSP's successfully gapped: 2874 Length of query: 878 Length of database: 3,060,696,203 Length adjustment: 145 Effective length of query: 733 Effective length of database: 1,694,649,028 Effective search space: 1242177737524 Effective search space used: 1242177737524 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 136 (57.0 bits)