BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0303.0023.p
         (49 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K557.1 B3K557_9BACI A/G-specific adenine glycosylase                 72   1e-11
B1D653.1 B1D653_9BACL A/G-specific adenine glycosylase                 69   2e-10

>B3K557.1 B3K557_9BACI A/G-specific adenine glycosylase
          Length = 382

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 38/46 (82%)

Query: 1   MEHCAARLAGCETSLPVKTKAKPPRPEERLAALVEGRGEHAGRVLI 46
           MEHC+ARL G E SLP+KTKAKPPRPE RL A+VEG G H G++LI
Sbjct: 208 MEHCSARLEGKEESLPIKTKAKPPRPEYRLTAIVEGTGVHEGKILI 253


>B1D653.1 B1D653_9BACL A/G-specific adenine glycosylase
          Length = 398

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/48 (62%), Positives = 39/48 (81%)

Query: 1   MEHCAARLAGCETSLPVKTKAKPPRPEERLAALVEGRGEHAGRVLIHS 48
           MEHC ARLAG ET LP+KTKAKPPRPE+R+AA++ G G + G++L+  
Sbjct: 211 MEHCEARLAGRETELPIKTKAKPPRPEKRVAAIIAGTGVYEGKILVRQ 258


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 301,478,857
Number of extensions: 8030755
Number of successful extensions: 23200
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 23200
Number of HSP's successfully gapped: 2
Length of query: 49
Length of database: 3,060,696,203
Length adjustment: 22
Effective length of query: 27
Effective length of database: 2,853,433,873
Effective search space: 77042714571
Effective search space used: 77042714571
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)