BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0303.0022.p (188 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3J5S5.1 C3J5S5_9BACI FAD-dependent pyridine nucleotide-disulphi... 233 6e-60 B7Y8E1.1 B7Y8E1_9BACI FAD-dependent pyridine nucleotide-disulphi... 233 6e-60 C0Z7D5.1 C0Z7D5_BREBN Putative uncharacterized protein 233 8e-60 Q5KVI1.1 Q5KVI1_GEOKA Hypothetical conserved protein 229 1e-58 B4BN13.1 B4BN13_9BACI FAD-dependent pyridine nucleotide-disulphi... 220 4e-56 >C3J5S5.1 C3J5S5_9BACI FAD-dependent pyridine nucleotide-disulphide oxidoreductase Length = 187 Score = 233 bits (594), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 116/161 (72%), Positives = 132/161 (81%), Gaps = 1/161 (0%) Query: 27 TLLIDNDKGMTRRGWYENYYGIAEIGGPELVETGHKQAVKFGAELVADQAVNLTAKGEGF 86 T+L D+DKGMT+R W EN+YG+ EI GPELVETG KQA KFGAELV Q N+ GF Sbjct: 27 TVLFDSDKGMTKRAWVENHYGVPEISGPELVETGKKQAAKFGAELVETQVTNVQKTDGGF 86 Query: 87 VIESESGAAYEAKHVILATGVMTDLAAKAGVETKDGTEPRIKTVVAVNAEGRTNIAGIWA 146 +E+E+G+ YEAKHVI ATGV TDLA K G+ TK GTEPRIKTV+ V+A G+TNI GIWA Sbjct: 87 RLETETGS-YEAKHVIFATGVATDLAEKIGLRTKPGTEPRIKTVIDVDANGKTNIDGIWA 145 Query: 147 AGTVAGVSVHAIITAGDGAKVAINIISELNGARYVDHDLLK 187 AGTVAGVSVH IITAGDGAKVAIN+ISELNG RYVDHD+LK Sbjct: 146 AGTVAGVSVHTIITAGDGAKVAINVISELNGERYVDHDVLK 186 >B7Y8E1.1 B7Y8E1_9BACI FAD-dependent pyridine nucleotide-disulphide oxidoreductase Length = 187 Score = 233 bits (594), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 116/161 (72%), Positives = 132/161 (81%), Gaps = 1/161 (0%) Query: 27 TLLIDNDKGMTRRGWYENYYGIAEIGGPELVETGHKQAVKFGAELVADQAVNLTAKGEGF 86 T+L D+DKGMT+R W EN+YG+ EI GPELVETG KQA KFGAELV Q N+ GF Sbjct: 27 TVLFDSDKGMTKRAWVENHYGVPEISGPELVETGKKQAAKFGAELVETQVTNVQKTDGGF 86 Query: 87 VIESESGAAYEAKHVILATGVMTDLAAKAGVETKDGTEPRIKTVVAVNAEGRTNIAGIWA 146 +E+E+G+ YEAKHVI ATGV TDLA K G+ TK GTEPRIKTV+ V+A G+TNI GIWA Sbjct: 87 RLETETGS-YEAKHVIFATGVATDLAEKIGLRTKPGTEPRIKTVIDVDANGKTNIDGIWA 145 Query: 147 AGTVAGVSVHAIITAGDGAKVAINIISELNGARYVDHDLLK 187 AGTVAGVSVH IITAGDGAKVAIN+ISELNG RYVDHD+LK Sbjct: 146 AGTVAGVSVHTIITAGDGAKVAINVISELNGERYVDHDVLK 186 >C0Z7D5.1 C0Z7D5_BREBN Putative uncharacterized protein Length = 189 Score = 233 bits (593), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 110/161 (68%), Positives = 132/161 (81%) Query: 27 TLLIDNDKGMTRRGWYENYYGIAEIGGPELVETGHKQAVKFGAELVADQAVNLTAKGEGF 86 TLLIDNDK MT+R W EN+YGI EI GP+L+E G KQA KFGAELVADQ N+T +G Sbjct: 27 TLLIDNDKSMTKRAWMENHYGIMEISGPDLIEIGKKQAAKFGAELVADQVSNITKTEQGL 86 Query: 87 VIESESGAAYEAKHVILATGVMTDLAAKAGVETKDGTEPRIKTVVAVNAEGRTNIAGIWA 146 ++E+ ++EAKHVILATG + LA GV+TK+G+EPRIKTVV V+A+G+TNI GIWA Sbjct: 87 LVETAEKGSFEAKHVILATGALVTLAEAIGVKTKEGSEPRIKTVVDVDAQGKTNIEGIWA 146 Query: 147 AGTVAGVSVHAIITAGDGAKVAINIISELNGARYVDHDLLK 187 AGT AGVSVH IIT+GDGAKVAIN+ISE+NG RYVDHD+LK Sbjct: 147 AGTCAGVSVHTIITSGDGAKVAINVISEMNGERYVDHDVLK 187 >Q5KVI1.1 Q5KVI1_GEOKA Hypothetical conserved protein Length = 187 Score = 229 bits (583), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 113/161 (70%), Positives = 132/161 (81%), Gaps = 1/161 (0%) Query: 27 TLLIDNDKGMTRRGWYENYYGIAEIGGPELVETGHKQAVKFGAELVADQAVNLTAKGEGF 86 T+L D+DKGMT+R W EN+YG+ EI GPELVETG +QA KFGAELV Q ++ GF Sbjct: 27 TVLFDSDKGMTKRAWVENHYGVPEISGPELVETGKRQAAKFGAELVETQVTDVQKTDGGF 86 Query: 87 VIESESGAAYEAKHVILATGVMTDLAAKAGVETKDGTEPRIKTVVAVNAEGRTNIAGIWA 146 +E+E+G+ +EAKHVI ATGV TDLA K G+ TK GTEPRIKTV+ V+A G+TNI GIWA Sbjct: 87 RLETENGS-FEAKHVIFATGVATDLAEKIGLRTKPGTEPRIKTVIDVDANGKTNIDGIWA 145 Query: 147 AGTVAGVSVHAIITAGDGAKVAINIISELNGARYVDHDLLK 187 AGTVAGVSVH IITAGDGAKVAIN+ISELNG RYVDHD+LK Sbjct: 146 AGTVAGVSVHTIITAGDGAKVAINVISELNGERYVDHDVLK 186 >B4BN13.1 B4BN13_9BACI FAD-dependent pyridine nucleotide-disulphide oxidoreductase Length = 187 Score = 220 bits (561), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 107/161 (66%), Positives = 128/161 (79%), Gaps = 1/161 (0%) Query: 27 TLLIDNDKGMTRRGWYENYYGIAEIGGPELVETGHKQAVKFGAELVADQAVNLTAKGEGF 86 T++ DNDK +T+R W EN+YG+ EI GP+L+ETG KQA KFGA LV Q ++ GF Sbjct: 27 TIVFDNDKSITKRAWIENHYGVPEISGPDLIETGKKQAAKFGANLVTAQVTDIQKTESGF 86 Query: 87 VIESESGAAYEAKHVILATGVMTDLAAKAGVETKDGTEPRIKTVVAVNAEGRTNIAGIWA 146 +++++G+ YEAKHVI ATGV TDLA K G+ TK TEPRIKTV+AV+ G+TNI GIWA Sbjct: 87 RLDTDNGS-YEAKHVIFATGVATDLAEKIGLRTKPATEPRIKTVIAVDENGKTNIDGIWA 145 Query: 147 AGTVAGVSVHAIITAGDGAKVAINIISELNGARYVDHDLLK 187 AGTVAG SVH IITAGDGAKVAINIISELNG RYVDHD+LK Sbjct: 146 AGTVAGTSVHTIITAGDGAKVAINIISELNGERYVDHDVLK 186 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.132 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 939,957,127 Number of extensions: 35404188 Number of successful extensions: 94425 Number of sequences better than 1.0e-05: 46 Number of HSP's gapped: 94651 Number of HSP's successfully gapped: 46 Length of query: 188 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 60 Effective length of database: 1,854,806,283 Effective search space: 111288376980 Effective search space used: 111288376980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 127 (53.5 bits)