BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0303.0021.p (519 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A5D6C8.1 A5D6C8_PELTS Sensor protein EC=2.7.13.3 401 e-110 B3K524.1 B3K524_9BACI Sensor protein EC=2.7.13.3 396 e-108 A4J1B9.1 A4J1B9_DESRM Sensor protein EC=2.7.13.3 391 e-107 Q24PD7.1 Q24PD7_DESHY Sensor protein EC=2.7.13.3 387 e-105 B8FYH9.1 B8FYH9_DESHD Sensor protein EC=2.7.13.3 387 e-105 >A5D6C8.1 A5D6C8_PELTS Sensor protein EC=2.7.13.3 Length = 478 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 226/480 (47%), Positives = 287/480 (59%), Gaps = 42/480 (8%) Query: 41 QYVLMRDFIYSNRAESMETQIRSVPREIFSSPPAWGAGGIDASGMSSGEAGSPDTGSPGN 100 QYVLM++F+Y N+A S+++Q+ SVPR + P G P+ G Sbjct: 35 QYVLMKEFVYRNKAASIQSQLLSVPRFDWPQLP-----------------GIPEDGRV-- 75 Query: 101 RPPGNLRNTGRRPLLLDAHTTIAVYSADGGFKDFQEETLSDSPAPRLTDAEYNDLLKHTT 160 R PL +A +G F SP PRL EY +L Sbjct: 76 ----------RPPLFFIPEVNLAFVDLEGNFYVLSRGPGDTSP-PRLDTGEYLSILGKRP 124 Query: 161 DKANGGYRLMAAPDGSEHLAVFMNLGKPQEARM-----LLQMSVSTGPLKDVIMQQXXXX 215 D Y+++ G+E L V +P AR + Q TGPLK+++++Q Sbjct: 125 DLR---YKVVYDSAGTEQLLVL----QPVMARNGKVIGITQAGTLTGPLKELLVRQLLVF 177 Query: 216 XXXXXXXXXXXXXXXXXXXRKTLVPLSNMGEAAEIIDAGNLSERFPVHQGQTEIDKLSRS 275 R+TL PLSNM + A IDAGNL++RFP QGQ EID+L+ S Sbjct: 178 LVLSLAAMFFGLLGFLPVIRRTLAPLSNMIDTAGQIDAGNLAKRFPTQQGQVEIDRLAES 237 Query: 276 FNGMLERLEISFHNEREAKEQMRRFAADASHELRTPLTSIHGFLEVLLRGAADNREQLMG 335 FNGML+RLE SF ERE KEQMRRF ADASHELRTPLTSIHGFLEVLLRGAA +QL Sbjct: 238 FNGMLDRLEASFKAERETKEQMRRFIADASHELRTPLTSIHGFLEVLLRGAASQPDQLQK 297 Query: 336 ALTSMHGESKRINKLVEDLLLLARMDGAPQLNIKGMMLGEIIAEMQPQLLMLAGDRRVTF 395 AL SMH ES+R+ +LV DLLLLA++D PQ+ + +L +I +M+PQL +LAG+R ++ Sbjct: 298 ALKSMHSESERLTRLVHDLLLLAKLDRTPQVELAEGLLSTMILDMEPQLRILAGNRELSL 357 Query: 396 DISPGIRGMYDPDKLKQVILNLFQNAVQHTDAHKGTIHISLTARGTEAELAVQDNGSGIA 455 I PG+ YD +K+KQVILNLF NAVQHTD G I +SL+ L+VQDNG GI Sbjct: 358 QIEPGVVCRYDVNKMKQVILNLFHNAVQHTDPEGGCIRLSLSRVDGGVRLSVQDNGPGIG 417 Query: 456 AEHIPHVFERFYRSDSSRTRKYGGSGLGLSITKSIVDAHHGGIRVESRPGEGTTFRVTLP 515 E++PH+F+RFYR D SR RKYGGSGLGL+ITK+IVD H G I VES+PGEG TF + LP Sbjct: 418 EEYLPHIFDRFYRIDVSRARKYGGSGLGLAITKAIVDIHGGVISVESKPGEGCTFHIWLP 477 >B3K524.1 B3K524_9BACI Sensor protein EC=2.7.13.3 Length = 497 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 223/502 (44%), Positives = 298/502 (59%), Gaps = 21/502 (4%) Query: 15 PHSLRKQXXXXXXXXXXXXXXXXXXXQYVLMRDFIYSNRAESMETQIRSVPREIFSSPPA 74 P SLR Q QYVLM++ ++ N+AE++ Q+RS+P E+ Sbjct: 12 PTSLRTQLLSRSLLVLALLLVLIGALQYVLMKNALFRNQAEALSLQVRSIPVEM------ 65 Query: 75 WGAGGIDASGMSSGEAGSPDTGSPGNRPPGNLRNTGRRPLLLDAHTTIAVYSADGGFKDF 134 W G + + S P N + RPLL + ++A + +G + D Sbjct: 66 WEPGRVQHNRPSV----------PNNDAHAVMPRQEDRPLLFLPNMSLAKIATNGSYTDL 115 Query: 135 QEET-LSDSPAPRLTDAEYNDLLKHTTDKANGGYRLMAAPDGSEHLAVFMNLGKPQEARM 193 + LS AP+L Y +L+ ++ Y ++ G+E + VF G P Sbjct: 116 ASDNGLS---APQLAAEAYTSILEQFKERRPVPYEVIDDAQGTEQIVVFRPYGSPNSPSG 172 Query: 194 LLQMSVSTGPLKDVIMQQXXXXXXXXXXXXXXXXXXXXXXXRKTLVPLSNMGEAAEIIDA 253 +LQ+ + T PL V+++Q R+TL PLS M E E DA Sbjct: 173 ILQLGMDTQPLHAVLLRQLLIFAALALLAMAGGIALYLPLLRRTLNPLSRMVETVERTDA 232 Query: 254 GNLSERFPVHQGQTEIDKLSRSFNGMLERLEISFHNEREAKEQMRRFAADASHELRTPLT 313 GNL+ERFP QGQ EID+L++SFNGML RLE +F EREAKEQMRRF ADASHELRTPLT Sbjct: 233 GNLAERFPAMQGQQEIDRLAQSFNGMLNRLEGAFEAEREAKEQMRRFIADASHELRTPLT 292 Query: 314 SIHGFLEVLLRGAADNREQLMGALTSMHGESKRINKLVEDLLLLARMDGAPQLNIKGMML 373 SIHGFLEVL RGAADN++QL AL+SMHGESKR+ KLVEDLLLLA++D P+L+++ L Sbjct: 293 SIHGFLEVLGRGAADNKDQLHAALSSMHGESKRMKKLVEDLLLLAKLDRKPELHLQDTRL 352 Query: 374 GEIIAEMQPQLLMLAGDRRVTFDISPGIRGMYDPDKLKQVILNLFQNAVQHTDAHKGTIH 433 ++ EM+P L MLA R VT + + DPDK+KQVI NLF NAVQHTD+ G I Sbjct: 353 DRLLLEMEPHLRMLAQGRNVTIQ-AAAVLCRCDPDKIKQVIYNLFHNAVQHTDSDTGRIT 411 Query: 434 ISLTARGTEAELAVQDNGSGIAAEHIPHVFERFYRSDSSRTRKYGGSGLGLSITKSIVDA 493 +++ A L V DNG+GI+ EH+P++FERFYR D SRTR++GG+GLGLSIT+SI++A Sbjct: 412 VTVDKTKDHAVLRVSDNGAGISKEHLPYLFERFYRIDESRTRQHGGAGLGLSITQSIMNA 471 Query: 494 HHGGIRVESRPGEGTTFRVTLP 515 H G + V+S +GT FR P Sbjct: 472 HGGQMSVDSTVNQGTVFRAEWP 493 >A4J1B9.1 A4J1B9_DESRM Sensor protein EC=2.7.13.3 Length = 480 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 222/515 (43%), Positives = 294/515 (57%), Gaps = 36/515 (6%) Query: 1 MIARITGFFGSLPAPHSLRKQXXXXXXXXXXXXXXXXXXXQYVLMRDFIYSNRAESMETQ 60 M + T +F + AP+SLR Q QYV M++ IY N+A S+++Q Sbjct: 1 MKNKKTSWF-KICAPNSLRIQLLSRSLLILAVLLGLIGLLQYVFMQEVIYRNKAASLQSQ 59 Query: 61 IRSVPREIFSSPPAWGAGGIDASGMSSGEAGSPDTGSPGNRPPGNLRNTGRRPLLLDAHT 120 + S+ R W +++ R P Sbjct: 60 VMSISRHF------WQDFSLESE-------------------------KNRSPRFFIPEA 88 Query: 121 TIAVYSADGGFKDFQEETLSDSPAPRLTDAEYNDLLKHTTDKANGGYRLMAAPDGSEHLA 180 +A G + E + P P+L EY L + Y+++ G E L Sbjct: 89 DLAFVDTAGNYFVLSERHGNIRP-PQLNIQEY---LASFEGRPRLNYKIIKDDSGVEQLV 144 Query: 181 VFMNLGKPQEARMLLQMSVSTGPLKDVIMQQXXXXXXXXXXXXXXXXXXXXXXXRKTLVP 240 V + + ++Q++ TGPLK+++ +Q ++TLVP Sbjct: 145 VLQRVFDHGKVLGVVQINTMTGPLKELLFRQLFTFLFLSLIALLMGLLSFSPIIKRTLVP 204 Query: 241 LSNMGEAAEIIDAGNLSERFPVHQGQTEIDKLSRSFNGMLERLEISFHNEREAKEQMRRF 300 L NM + AE IDAGNL++RFP QGQ EID+L+ SFNGML+RLE SF ERE KEQMRRF Sbjct: 205 LFNMVDTAEQIDAGNLTKRFPTQQGQMEIDRLADSFNGMLDRLEASFEAERETKEQMRRF 264 Query: 301 AADASHELRTPLTSIHGFLEVLLRGAADNREQLMGALTSMHGESKRINKLVEDLLLLARM 360 DASHELRTPLTSIHGFLEVLLRGAA+ +QL AL SM+GES+R+NKLV DLLLL ++ Sbjct: 265 IGDASHELRTPLTSIHGFLEVLLRGAANQPDQLNKALKSMYGESERMNKLVHDLLLLTKL 324 Query: 361 DGAPQLNIKGMMLGEIIAEMQPQLLMLAGDRRVTFDISPGIRGMYDPDKLKQVILNLFQN 420 D AP+L +K L +I EM+PQL +LAG+RR+ + I +D DK+KQVILNLF N Sbjct: 325 DHAPRLEVKEGFLDTVIQEMEPQLCILAGNRRLQLMVDSNIECKFDTDKMKQVILNLFHN 384 Query: 421 AVQHTDAHKGTIHISLTARGTEAELAVQDNGSGIAAEHIPHVFERFYRSDSSRTRKYGGS 480 AVQHTD KG I ISL R +L+V+DNG GI H+P VF+RFYR D+SRTR++GG+ Sbjct: 385 AVQHTDPEKGEIKISLYKRTDGVQLSVEDNGPGIKDFHLPKVFDRFYRIDASRTRRHGGA 444 Query: 481 GLGLSITKSIVDAHHGGIRVESRPGEGTTFRVTLP 515 GLGL+ITK+I+DAH G I VES G G+TF + LP Sbjct: 445 GLGLAITKAIIDAHGGTINVESLEGTGSTFHIWLP 479 >Q24PD7.1 Q24PD7_DESHY Sensor protein EC=2.7.13.3 Length = 503 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 234/513 (45%), Positives = 302/513 (58%), Gaps = 32/513 (6%) Query: 14 APHSLRKQXXXXXXXXXXXXXXXXXXXQYVLMRDFIYSNRAESMETQIRSVPREIFSSPP 73 P+SLR Q QYV ++DFI + A S+ +QI SVPR+ ++ Sbjct: 12 TPNSLRFQLLSRSLFFLAIILLLIGIFQYVFLKDFILGSTAASIRSQIASVPRDSWTQML 71 Query: 74 AWGAGGIDAS-----GMSSGEAGSPDTGSPGNRPPGNLRNTGRRPLLLDAHTTIAVYSAD 128 + I+A + G G P NR P NL ++ TIA + Sbjct: 72 LYAE--INAKFNLDKDIVELVPGKTQEGPP-NRIPINLMDS-----------TIAFVDLN 117 Query: 129 GGFKDFQEETLSDSPAPRLTDAEYNDLLKHTTDKANGG-YRLMAAPDGSEHLAVFMNLGK 187 G T++ S AP L A D + D + + ++ + G+E L V Sbjct: 118 GNVTSLAN-TMNRSGAPPLLSA---DQYQQALDPSESPRFWVVNSESGTELLVVL----H 169 Query: 188 PQEARMLL----QMSVSTGPLKDVIMQQXXXXXXXXXXXXXXXXXXXXXXXRKTLVPLSN 243 P E R L Q+S+ST ++DV+ +Q +KTLVPLSN Sbjct: 170 PLELRGYLVGFIQVSLSTQFVQDVLFRQLSIFMLLSVLALVGGLVAYQAVIKKTLVPLSN 229 Query: 244 MGEAAEIIDAGNLSERFPVHQGQTEIDKLSRSFNGMLERLEISFHNEREAKEQMRRFAAD 303 + E +DAGNL+ER PV QGQ EID L+ S NGMLERLE SF E+EAKEQMRRF AD Sbjct: 230 IVHTMENMDAGNLNERLPVEQGQKEIDTLAVSLNGMLERLESSFTAEKEAKEQMRRFVAD 289 Query: 304 ASHELRTPLTSIHGFLEVLLRGAADNREQLMGALTSMHGESKRINKLVEDLLLLARMDGA 363 ASHELRTPLTSIHGFLEVLLRGA + ++L +LTSM+ ES+R+ KL++DLLLLA++D + Sbjct: 290 ASHELRTPLTSIHGFLEVLLRGAMNQPDKLQKSLTSMYAESERMKKLIQDLLLLAKLDRS 349 Query: 364 PQLNIKGMMLGEIIAEMQPQLLMLAGDRRVTFDISPGIRGMYDPDKLKQVILNLFQNAVQ 423 P L +G +I EM+PQL MLA +R + D++P D DK+KQVILNLF NAVQ Sbjct: 350 PYLEKSEKDIGVLILEMEPQLRMLAEEREIQLDLAPEELVPIDVDKMKQVILNLFHNAVQ 409 Query: 424 HTDAHKGTIHISLTARGTEAELAVQDNGSGIAAEHIPHVFERFYRSDSSRTRKYGGSGLG 483 HTD KG I ISL + + EL VQDNG GI EH+PH+FERFYRSDSSRTRKYGG+GLG Sbjct: 410 HTDPDKGLIQISLKSEASGVELTVQDNGPGIPEEHLPHLFERFYRSDSSRTRKYGGAGLG 469 Query: 484 LSITKSIVDAHHGGIRVESRPGEGTTFRVTLPR 516 L+IT S+V+ H G +RVES+ GEG+ F V LP+ Sbjct: 470 LAITHSLVELHGGTLRVESKVGEGSRFIVGLPK 502 >B8FYH9.1 B8FYH9_DESHD Sensor protein EC=2.7.13.3 Length = 503 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 234/513 (45%), Positives = 302/513 (58%), Gaps = 32/513 (6%) Query: 14 APHSLRKQXXXXXXXXXXXXXXXXXXXQYVLMRDFIYSNRAESMETQIRSVPREIFSSPP 73 P+SLR Q QYV ++DFI + A S+ +QI SVPR+ ++ Sbjct: 12 TPNSLRFQLLSRSLFFLAIILLLIGIFQYVFLKDFILGSTAASIRSQIASVPRDSWTQML 71 Query: 74 AWGAGGIDAS-----GMSSGEAGSPDTGSPGNRPPGNLRNTGRRPLLLDAHTTIAVYSAD 128 + I+A + G G P NR P NL ++ TIA + Sbjct: 72 LYAE--INAKFNLDKDIVELVPGKTQEGPP-NRIPINLMDS-----------TIAFVDLN 117 Query: 129 GGFKDFQEETLSDSPAPRLTDAEYNDLLKHTTDKANGG-YRLMAAPDGSEHLAVFMNLGK 187 G T++ S AP L A D + D + + ++ + G+E L V Sbjct: 118 GNVTSLAN-TMNRSGAPPLLSA---DQYQQALDPSESPRFWVVNSESGTELLVVL----H 169 Query: 188 PQEARMLL----QMSVSTGPLKDVIMQQXXXXXXXXXXXXXXXXXXXXXXXRKTLVPLSN 243 P E R L Q+S+ST ++DV+ +Q +KTLVPLSN Sbjct: 170 PLELRGYLVGFIQVSLSTQFVQDVLFRQLSIFMLLSVLALVGGLVAYQAVIKKTLVPLSN 229 Query: 244 MGEAAEIIDAGNLSERFPVHQGQTEIDKLSRSFNGMLERLEISFHNEREAKEQMRRFAAD 303 + E +DAGNL+ER PV QGQ EID L+ S NGMLERLE SF E+EAKEQMRRF AD Sbjct: 230 IVHTMENMDAGNLNERLPVEQGQKEIDTLAVSLNGMLERLESSFTAEKEAKEQMRRFVAD 289 Query: 304 ASHELRTPLTSIHGFLEVLLRGAADNREQLMGALTSMHGESKRINKLVEDLLLLARMDGA 363 ASHELRTPLTSIHGFLEVLLRGA + ++L +LTSM+ ES+R+ KL++DLLLLA++D + Sbjct: 290 ASHELRTPLTSIHGFLEVLLRGAMNQPDKLQKSLTSMYAESERMKKLIQDLLLLAKLDRS 349 Query: 364 PQLNIKGMMLGEIIAEMQPQLLMLAGDRRVTFDISPGIRGMYDPDKLKQVILNLFQNAVQ 423 P L +G +I EM+PQL MLA +R + D++P D DK+KQVILNLF NAVQ Sbjct: 350 PYLEKSEKDIGVLILEMEPQLRMLAEEREIQLDLAPEELVPIDVDKMKQVILNLFHNAVQ 409 Query: 424 HTDAHKGTIHISLTARGTEAELAVQDNGSGIAAEHIPHVFERFYRSDSSRTRKYGGSGLG 483 HTD KG I ISL + + EL VQDNG GI EH+PH+FERFYRSDSSRTRKYGG+GLG Sbjct: 410 HTDPDKGLIQISLKSEASGVELTVQDNGPGIPEEHLPHLFERFYRSDSSRTRKYGGAGLG 469 Query: 484 LSITKSIVDAHHGGIRVESRPGEGTTFRVTLPR 516 L+IT S+V+ H G +RVES+ GEG+ F V LP+ Sbjct: 470 LAITHSLVELHGGTLRVESKVGEGSRFIVGLPK 502 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,815,090,261 Number of extensions: 116884631 Number of successful extensions: 430237 Number of sequences better than 1.0e-05: 32599 Number of HSP's gapped: 376537 Number of HSP's successfully gapped: 32770 Length of query: 519 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 379 Effective length of database: 1,741,754,103 Effective search space: 660124805037 Effective search space used: 660124805037 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)