BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0303.0020.p (228 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A5D6C7.1 A5D6C7_PELTS Response regulator 357 3e-97 A4J1B8.1 A4J1B8_DESRM Two component transcriptional regulator, w... 352 2e-95 Q24PD6.1 Q24PD6_DESHY Putative uncharacterized protein 351 3e-95 B8FYH8.1 B8FYH8_DESHD Two component transcriptional regulator, w... 351 3e-95 B1D7L2.1 B1D7L2_9BACL Two component transcriptional regulator, w... 339 1e-91 >A5D6C7.1 A5D6C7_PELTS Response regulator Length = 227 Score = 357 bits (917), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 176/227 (77%), Positives = 200/227 (88%), Gaps = 1/227 (0%) Query: 1 MKAAQGVKLLLVDDEPHILQFLELGLINEGFEVRTAPDGASAIAVAADFKPHVAILDVMM 60 M +G+++LLVDDEP+ILQFLELGL NEGFEV+TA DG +AI + F+PHV ILDVMM Sbjct: 1 MPKLKGIRVLLVDDEPNILQFLELGLQNEGFEVQTAQDGFTAINLMKQFQPHVVILDVMM 60 Query: 61 PGMDGFELCRYLRSEESELAVIMLTAKDEVDDRVKGLSIGADDYMVKPFSFDELLARIQA 120 PGMDGFE+CR L+ E+ +AVIMLTA+DEVDDRVKGL+IGADDYMVKPFSF+ELLARI A Sbjct: 61 PGMDGFEVCRMLKKMEN-VAVIMLTARDEVDDRVKGLNIGADDYMVKPFSFEELLARIHA 119 Query: 121 RLRNQFPGLLGEVRCGPFRIDGRRKEIRHKDEVLELSPTEYELLQYLVINHGLVLSKPMI 180 R+RNQFP L GEV GPF+ID RRKEI+ + VLELSPTEYELL+YLV+NHGLVLSK MI Sbjct: 120 RVRNQFPNLFGEVAIGPFQIDDRRKEIKFEGRVLELSPTEYELLKYLVLNHGLVLSKRMI 179 Query: 181 LDKVWGYDFGGEENIVEVYIRSLREKLGDKDHRIIRTLRGAGYRVDL 227 LDKVWGYDF GEENIVEVY+RSLREKL DKDH+IIRTLRGAGYRVDL Sbjct: 180 LDKVWGYDFAGEENIVEVYVRSLREKLKDKDHQIIRTLRGAGYRVDL 226 >A4J1B8.1 A4J1B8_DESRM Two component transcriptional regulator, winged helix family Length = 227 Score = 352 bits (902), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 170/227 (74%), Positives = 200/227 (88%), Gaps = 1/227 (0%) Query: 1 MKAAQGVKLLLVDDEPHILQFLELGLINEGFEVRTAPDGASAIAVAADFKPHVAILDVMM 60 MK +G+++LLVDDE +ILQFLE+GL NEGFEV+TA DG SAI + F+PHV ILDVMM Sbjct: 1 MKQLKGIRILLVDDESNILQFLEIGLQNEGFEVQTAQDGMSAITLMKQFQPHVVILDVMM 60 Query: 61 PGMDGFELCRYLRSEESELAVIMLTAKDEVDDRVKGLSIGADDYMVKPFSFDELLARIQA 120 PGMDGFE+CR L+ E+ +AVIMLTA+DEVDDRVKGL++GADDYMVKPFSF+ELLARI A Sbjct: 61 PGMDGFEVCRMLKKTEN-VAVIMLTARDEVDDRVKGLNLGADDYMVKPFSFEELLARIYA 119 Query: 121 RLRNQFPGLLGEVRCGPFRIDGRRKEIRHKDEVLELSPTEYELLQYLVINHGLVLSKPMI 180 R+RNQFP L G+V GPF+ID RRKEI+ ++ VLELS TEYELL++LV+NHGLVLSK MI Sbjct: 120 RIRNQFPNLFGKVVVGPFQIDDRRKEIQFENRVLELSHTEYELLKFLVLNHGLVLSKTMI 179 Query: 181 LDKVWGYDFGGEENIVEVYIRSLREKLGDKDHRIIRTLRGAGYRVDL 227 LDKVWGYDFGGEENIVEVYIRSLR+KL DK+H+IIRTLR +GYRVDL Sbjct: 180 LDKVWGYDFGGEENIVEVYIRSLRDKLNDKNHQIIRTLRRSGYRVDL 226 >Q24PD6.1 Q24PD6_DESHY Putative uncharacterized protein Length = 227 Score = 351 bits (900), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 162/228 (71%), Positives = 203/228 (89%), Gaps = 1/228 (0%) Query: 1 MKAAQGVKLLLVDDEPHILQFLELGLINEGFEVRTAPDGASAIAVAADFKPHVAILDVMM 60 M+ +G+K+L++DDEP+IL+FLE+GL+NEGFEV+TA DG + + +A PH+ ILD+MM Sbjct: 1 MQKLKGIKILIIDDEPNILEFLEMGLLNEGFEVQTAADGMTGVTLAKQLHPHLVILDIMM 60 Query: 61 PGMDGFELCRYLRSEESELAVIMLTAKDEVDDRVKGLSIGADDYMVKPFSFDELLARIQA 120 PGMDGFE+CR L+ E+ +++IMLTAKDEV+DRVKGL+IGADDYM KPFSF+ELLARI A Sbjct: 61 PGMDGFEVCRMLKKSEN-VSIIMLTAKDEVEDRVKGLTIGADDYMAKPFSFEELLARIHA 119 Query: 121 RLRNQFPGLLGEVRCGPFRIDGRRKEIRHKDEVLELSPTEYELLQYLVINHGLVLSKPMI 180 R+RNQFP LLGEV GPFR+D RRKEI+ +D+VLELSPTEYELL++L++N GLVLSK MI Sbjct: 120 RIRNQFPTLLGEVVMGPFRLDDRRKEIQFQDKVLELSPTEYELLKFLILNQGLVLSKTMI 179 Query: 181 LDKVWGYDFGGEENIVEVYIRSLREKLGDKDHRIIRTLRGAGYRVDLV 228 LDKVWGYDF G++NIVEVYIRSLREKLGDK+HR+IRTLRG+GYR+DL+ Sbjct: 180 LDKVWGYDFAGDDNIVEVYIRSLREKLGDKEHRLIRTLRGSGYRMDLI 227 >B8FYH8.1 B8FYH8_DESHD Two component transcriptional regulator, winged helix family Length = 227 Score = 351 bits (900), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 162/228 (71%), Positives = 203/228 (89%), Gaps = 1/228 (0%) Query: 1 MKAAQGVKLLLVDDEPHILQFLELGLINEGFEVRTAPDGASAIAVAADFKPHVAILDVMM 60 M+ +G+K+L++DDEP+IL+FLE+GL+NEGFEV+TA DG + + +A PH+ ILD+MM Sbjct: 1 MQKLKGIKILIIDDEPNILEFLEMGLLNEGFEVQTAADGMTGVTLAKQLHPHLVILDIMM 60 Query: 61 PGMDGFELCRYLRSEESELAVIMLTAKDEVDDRVKGLSIGADDYMVKPFSFDELLARIQA 120 PGMDGFE+CR L+ E+ +++IMLTAKDEV+DRVKGL+IGADDYM KPFSF+ELLARI A Sbjct: 61 PGMDGFEVCRMLKKSEN-VSIIMLTAKDEVEDRVKGLTIGADDYMAKPFSFEELLARIHA 119 Query: 121 RLRNQFPGLLGEVRCGPFRIDGRRKEIRHKDEVLELSPTEYELLQYLVINHGLVLSKPMI 180 R+RNQFP LLGEV GPFR+D RRKEI+ +D+VLELSPTEYELL++L++N GLVLSK MI Sbjct: 120 RIRNQFPTLLGEVVMGPFRLDDRRKEIQFQDKVLELSPTEYELLKFLILNQGLVLSKTMI 179 Query: 181 LDKVWGYDFGGEENIVEVYIRSLREKLGDKDHRIIRTLRGAGYRVDLV 228 LDKVWGYDF G++NIVEVYIRSLREKLGDK+HR+IRTLRG+GYR+DL+ Sbjct: 180 LDKVWGYDFAGDDNIVEVYIRSLREKLGDKEHRLIRTLRGSGYRMDLI 227 >B1D7L2.1 B1D7L2_9BACL Two component transcriptional regulator, winged helix family Length = 225 Score = 339 bits (869), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 157/223 (70%), Positives = 198/223 (88%) Query: 5 QGVKLLLVDDEPHILQFLELGLINEGFEVRTAPDGASAIAVAADFKPHVAILDVMMPGMD 64 G++LLL DDEPHI+QFLELGL+NEGF++RTA DGA+A+ VA +F+PHV ILDVMMP ++ Sbjct: 2 NGIRLLLADDEPHIIQFLELGLLNEGFDIRTAQDGAAALQVAKEFQPHVLILDVMMPELN 61 Query: 65 GFELCRYLRSEESELAVIMLTAKDEVDDRVKGLSIGADDYMVKPFSFDELLARIQARLRN 124 GFE+C+ ++ + +AVIMLTAKD+++DRVKGL++GADDY+VKPFSF+ELLARI+ARLRN Sbjct: 62 GFEVCQAVKDTGANVAVIMLTAKDDIEDRVKGLTLGADDYVVKPFSFEELLARIKARLRN 121 Query: 125 QFPGLLGEVRCGPFRIDGRRKEIRHKDEVLELSPTEYELLQYLVINHGLVLSKPMILDKV 184 QFP LLGE GPFR++ +KE+ ++D+VLELSPTEYELL+Y+V N+G+VLSK ILD V Sbjct: 122 QFPSLLGEATYGPFRVNDVKKELIYQDQVLELSPTEYELLKYIVQNNGIVLSKAQILDSV 181 Query: 185 WGYDFGGEENIVEVYIRSLREKLGDKDHRIIRTLRGAGYRVDL 227 WGY FGGEENIVEVYIRSLR+KLGDK+HR+IRTLRG GYR+DL Sbjct: 182 WGYRFGGEENIVEVYIRSLRDKLGDKEHRLIRTLRGVGYRMDL 224 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.144 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,391,364,274 Number of extensions: 58327801 Number of successful extensions: 290543 Number of sequences better than 1.0e-05: 31976 Number of HSP's gapped: 261383 Number of HSP's successfully gapped: 32175 Length of query: 228 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 97 Effective length of database: 1,826,543,238 Effective search space: 177174694086 Effective search space used: 177174694086 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)