BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0303.0016.p
         (160 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K531.1 B3K531_9BACI GAF domain protein                              191   2e-47
A4IRU3.1 A4IRU3_GEOTN GAF domain-containing proteins                  185   1e-45
B4BPS4.1 B4BPS4_9BACI Putative GAF sensor protein                     185   1e-45
Q5KW51.1 Q5KW51_GEOKA Hypothetical conserved protein                  182   6e-45
C3IXL0.1 C3IXL0_9BACI Putative GAF sensor protein                     178   1e-43

>B3K531.1 B3K531_9BACI GAF domain protein
          Length = 161

 Score =  191 bits (484), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/138 (64%), Positives = 105/138 (76%)

Query: 1   MFQAMPYDGTRSERYESVLSQLGALMEGEPXXXXXXXXXXXXXKFSLPDTNWAGFYLFDG 60
           MFQ  PY+GTRSE+Y  VL+QL AL+  EP             K  L DTNW GFYL+DG
Sbjct: 1   MFQNTPYEGTRSEQYAQVLNQLKALIHDEPNAIANLSNASALLKQFLSDTNWVGFYLYDG 60

Query: 61  KELVLGPFQGLPACIRIPLGKGVCGTAASERRTLVVGDVHAFPGHIACDEASNSEIVVPL 120
           KELVLGPFQGLPACIRIP+ +GVCGTAA++++TL+V DVH FPGHIACD ASNSEIVVP+
Sbjct: 61  KELVLGPFQGLPACIRIPMNRGVCGTAAAKQQTLLVADVHEFPGHIACDAASNSEIVVPM 120

Query: 121 VQGDRLLGVLDIDSPIKH 138
           +    L GVLDIDSP+K+
Sbjct: 121 MVDGALYGVLDIDSPLKN 138


>A4IRU3.1 A4IRU3_GEOTN GAF domain-containing proteins
          Length = 158

 Score =  185 bits (469), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/138 (63%), Positives = 100/138 (72%)

Query: 1   MFQAMPYDGTRSERYESVLSQLGALMEGEPXXXXXXXXXXXXXKFSLPDTNWAGFYLFDG 60
           MF  + Y+GTR E Y  V+ QL AL+ GEP                L D NW GFYL DG
Sbjct: 1   MFHQLTYNGTREENYALVIEQLKALIAGEPNMIANLANASALLNQFLTDINWVGFYLADG 60

Query: 61  KELVLGPFQGLPACIRIPLGKGVCGTAASERRTLVVGDVHAFPGHIACDEASNSEIVVPL 120
            ELVLGPFQGLPAC+RIP GKGVCGTAA+ERRT+VV DVH FPGHIACD AS SEIVVPL
Sbjct: 61  DELVLGPFQGLPACVRIPFGKGVCGTAAAERRTVVVPDVHQFPGHIACDAASQSEIVVPL 120

Query: 121 VQGDRLLGVLDIDSPIKH 138
           ++  R++GVLDIDSPIK+
Sbjct: 121 IKEGRVIGVLDIDSPIKN 138


>B4BPS4.1 B4BPS4_9BACI Putative GAF sensor protein
          Length = 158

 Score =  185 bits (469), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/138 (63%), Positives = 100/138 (72%)

Query: 1   MFQAMPYDGTRSERYESVLSQLGALMEGEPXXXXXXXXXXXXXKFSLPDTNWAGFYLFDG 60
           MF  + Y+GTR E Y  V+ QL AL+ GEP                L D NW GFYL DG
Sbjct: 1   MFHQLTYNGTREENYALVIEQLKALIAGEPNMIANLANASALLNQFLTDINWVGFYLADG 60

Query: 61  KELVLGPFQGLPACIRIPLGKGVCGTAASERRTLVVGDVHAFPGHIACDEASNSEIVVPL 120
            ELVLGPFQGLPAC+RIP GKGVCGTAA+ERRT+VV DVH FPGHIACD AS SEIVVPL
Sbjct: 61  DELVLGPFQGLPACVRIPFGKGVCGTAAAERRTVVVPDVHQFPGHIACDAASQSEIVVPL 120

Query: 121 VQGDRLLGVLDIDSPIKH 138
           ++  R++GVLDIDSPIK+
Sbjct: 121 IKEGRVIGVLDIDSPIKN 138


>Q5KW51.1 Q5KW51_GEOKA Hypothetical conserved protein
          Length = 158

 Score =  182 bits (463), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 86/138 (62%), Positives = 102/138 (73%)

Query: 1   MFQAMPYDGTRSERYESVLSQLGALMEGEPXXXXXXXXXXXXXKFSLPDTNWAGFYLFDG 60
           MF+ M Y+GTR E Y  V+ QL +L+ GEP                  D NW GFYL DG
Sbjct: 1   MFRPMAYNGTREENYALVIEQLKSLISGEPNFIANLANAAALLNQFFTDINWVGFYLADG 60

Query: 61  KELVLGPFQGLPACIRIPLGKGVCGTAASERRTLVVGDVHAFPGHIACDEASNSEIVVPL 120
           +ELVLGPFQGLPAC+RIP GKGVCGTAA++RRT+VV DVH FPGHIACD AS SEIVVPL
Sbjct: 61  EELVLGPFQGLPACVRIPFGKGVCGTAAAKRRTVVVPDVHQFPGHIACDAASQSEIVVPL 120

Query: 121 VQGDRLLGVLDIDSPIKH 138
           ++ DR++GVLDIDSP+K+
Sbjct: 121 IKDDRVIGVLDIDSPVKN 138


>C3IXL0.1 C3IXL0_9BACI Putative GAF sensor protein
          Length = 158

 Score =  178 bits (452), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 100/138 (72%)

Query: 1   MFQAMPYDGTRSERYESVLSQLGALMEGEPXXXXXXXXXXXXXKFSLPDTNWAGFYLFDG 60
           MF  + Y GTR E Y+ V+ QL AL+ GEP                  D NW GFYL +G
Sbjct: 1   MFHPIAYRGTREENYQLVIEQLKALIAGEPNFIANLANAAALLNQFFTDINWVGFYLAEG 60

Query: 61  KELVLGPFQGLPACIRIPLGKGVCGTAASERRTLVVGDVHAFPGHIACDEASNSEIVVPL 120
           +ELVLGPFQGLPAC+RIP GKGVCGTAA+ERRT+VV DVH FPGHIACD AS SEIVVPL
Sbjct: 61  QELVLGPFQGLPACVRIPFGKGVCGTAAAERRTVVVPDVHQFPGHIACDAASQSEIVVPL 120

Query: 121 VQGDRLLGVLDIDSPIKH 138
           ++  R++GVLDIDSP+K+
Sbjct: 121 IKDGRVIGVLDIDSPVKN 138


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.141    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 828,249,888
Number of extensions: 30450434
Number of successful extensions: 42853
Number of sequences better than 1.0e-05: 786
Number of HSP's gapped: 42519
Number of HSP's successfully gapped: 786
Length of query: 160
Length of database: 3,060,696,203
Length adjustment: 121
Effective length of query: 39
Effective length of database: 1,920,753,388
Effective search space: 74909382132
Effective search space used: 74909382132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)